FC931478
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_PICTO (Peptide chain release factor subunit 1 OS=Picrophilus torridus GN=prf1 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.200e-23 Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 2 Query: 212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 634 G GT +ISL +PP Q+S V + L +E+ T+SNIKS+ R++VL AI S RLK Y + P GLV + G I T + + T EP PI +Y CD+ FH + L L+ D +G IV+D G L G EV+ Sbjct: 23 GRGTELISLYIPPDKQISDVVQYLREEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYKQPPETGLVFFVGHIATRGDQTEMYTKIIEPPEPIQTFMYKCDSNFHLEQLESQLKEKDIYGLIVIDRKEATVGFLKGTRIEVV 163 HSP 2 Score: 21.1718 bits (43), Expect = 1.200e-23 Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 1 Query: 661 KHGRGGQSALRF 696 KH +GGQS+ RF Sbjct: 173 KHHQGGQSSRRF 184
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_ARCFU (Peptide chain release factor subunit 1 OS=Archaeoglobus fulgidus GN=prf1 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.283e-22 Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 634 +G GT +I+L +PP ++ V+ L E ASNIKS+ R +VL I + RLK + K P NG+V+ +G +V +GKEK +T EP P+ Y CD+KF+ D L E+L +G IV+D G L G EVL Sbjct: 20 KGRGTELITLYIPPDKNIADVSNQLRSELSQASNIKSKQTRTNVLAGIEAILNRLKHFRKPPENGMVIISG-VVNINGKEKHITEIIEPPEPVPLYKYHCDSKFYLDPLKEMLTEKKLYGLIVLDRREATVGLLKGKRIEVL 160 HSP 2 Score: 22.3274 bits (46), Expect = 1.283e-22 Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 661 KHGRGGQSALRF 696 KH +GGQS++RF Sbjct: 170 KHRQGGQSSVRF 181
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_METTH (Peptide chain release factor subunit 1 OS=Methanobacterium thermoautotrophicum GN=prf1 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22 Identity = 54/151 (35.76%), Postives = 85/151 (56.29%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT-DDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 RG GT ++S+ +PP Q+S V K + +E ++NIKS+ +++V AI QRLKL+ K P GLV++ G + G EK T FEP PI +Y C+++F+ + L E+LE + +G V+D TL G ++L + +P Sbjct: 23 RGRGTELVSVYIPPDRQISDVAKHMREELSQSANIKSKQTKKNVQSAIEVIMQRLKLFPKPPEKGLVMFVGMVPRGGPGTEKMETYVFEPPEPIKTYIYHCNSEFYLEPLREMLEEKETYGLAVLDRKEATIATLKGKRIDILKTLTSGVP 173
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_METST (Peptide chain release factor subunit 1 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=prf1 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.369e-21 Identity = 52/151 (34.44%), Postives = 85/151 (56.29%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT-DDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 +G GT ++S+ +PP Q+S V K + DE G ++NIKS+ R++V AI QRLKL+ K P GLV++ G I G EK T F+P + Y CD++F + L +++E + +G +V+D + TL G +++ + +P Sbjct: 23 KGRGTELVSVYIPPEKQISDVAKQMRDELGQSANIKSKQTRKNVQSAIEVIIQRLKLFPKPPEKGLVMFVGMIPKGGPGTEKMETYVFQPPEAVQTYTYHCDSQFFVEPLKQIIEYKEVYGVVVLDRKESTIATLRGKRIDIIKHLTSGVP 173
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_METS3 (Peptide chain release factor subunit 1 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=prf1 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.278e-21 Identity = 54/151 (35.76%), Postives = 82/151 (54.30%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT-DDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 +G GT ++S+ +P Q+S V K + DE G ++NIKS+ R++V AI QR++L+ P NGLVL+ G I G EK T FEP PI Y C+N+F + L ++E + +G V+D TL G +L+ + +P Sbjct: 23 KGRGTELVSVYIPHDKQISDVGKQMRDELGQSANIKSKQTRKNVQSAIEVIMQRIRLFKAAPENGLVLFVGMIPRGGPGTEKMETYVFEPPEPITTYWYQCNNEFFLEPLEYMIEERETYGLAVIDRKEATIATLRGKKVNILNHLTSGVP 173
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_HALWD (Peptide chain release factor subunit 1 OS=Haloquadratum walsbyi (strain DSM 16790) GN=prf1 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.214e-20 Identity = 57/151 (37.75%), Postives = 83/151 (54.97%), Query Frame = 2 Query: 212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 G+GT ++++ +PP QVS V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NG+VL++G + T G+ VT E P P+ + Y CD+ F TD L ++L FG IV+D G L G E + S +P Sbjct: 29 GSGTQLVTIYIPPDRQVSDVVAHITQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTYPPDNGIVLFSGAVSTGGGQTTMVTRSLESPPEPVQSFRYHCDSDFLTDPLEDMLADKGLFGLIVLDRREANVGWLKGKRVEPVKSASSLVP 179 HSP 2 Score: 21.1718 bits (43), Expect = 3.214e-20 Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1 Query: 661 KHGRGGQSALRFA 699 K +GGQSA RFA Sbjct: 181 KQRKGGQSAQRFA 193
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_METJA (Peptide chain release factor subunit 1 OS=Methanocaldococcus jannaschii GN=prf1 PE=3 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20 Identity = 54/151 (35.76%), Postives = 83/151 (54.97%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIV-TDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 +G GT +ISL +P ++S V + L +E ASNIKS+ R++V AI + QRLKL + G+V++ G + + G EK T EP PI +Y CD++F+ + L E LE D +G I++D N + G +L K + +P Sbjct: 23 KGKGTELISLYIPAGRRISDVAQHLREEMSQASNIKSKSTRKNVQSAIEAILQRLKLLKEPLEKGVVIFAGMVPRSGPGTEKMETYVIEPPEPIKTYIYRCDSEFYLEPLEEFLEDKDAYGVILVDRNEATIALVKGRNINILKKLTSGVP 173
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_METMA (Peptide chain release factor subunit 1 OS=Methanosarcina mazei GN=prf1 PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20 Identity = 52/150 (34.67%), Postives = 79/150 (52.67%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 +G T +ISL +PP Q+ VT L DE G A+NIKS++ R +V GAI S RL+ +KVP NG+V +TG + K + P PI Y CD+ F+ + L ++L+ + +G +V+D G L G + + +P Sbjct: 23 KGRSTELISLYIPPDKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIVPPDPITVYKYHCDSSFYLEPLEDMLKDKNTYGLLVLDRREATIGLLVGKRIQPFRNLTSTVP 172
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_METBU (Peptide chain release factor subunit 1 OS=Methanococcoides burtonii (strain DSM 6242) GN=prf1 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20 Identity = 54/150 (36.00%), Postives = 78/150 (52.00%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 +G GT +ISL +PP Q+S V L +E ASNIKS++ + +V GAI S RL+ Y VP NG+V +TG + K T EP +PI Y CD+ F L ++L+ +G +V+D G L+G E + +P Sbjct: 23 KGRGTELISLYIPPDKQISDVVSQLRNEHSQASNIKSKLTKTNVQGAIDSIMSRLR-YGTVPENGIVYFTGAVDVGANKTNMETTIVEPPQPIITYRYHCDSSFFLTPLEDMLKEAKTYGLLVLDRREATVGLLTGKQIEAFRNLTSTVP 171
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF11_METAC (Peptide chain release factor subunit 1-1 OS=Methanosarcina acetivorans GN=prf11 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.954e-20 Identity = 52/150 (34.67%), Postives = 77/150 (51.33%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 +G T +ISL +P Q+ VT L DE G A+NIKS++ R +V GAI S RL+ +KVP NG+V +TG + K + P PI Y CD+ F+ + L ++L+ FG +V+D G L G + + +P Sbjct: 23 KGRSTELISLYIPADKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIIPPEPITVYKYHCDSSFYLEPLEDMLKDKSTFGLLVLDRREATIGLLVGKRIQAFRNLTSTVP 172 The following BLAST results are available for this feature:
BLAST of FC931478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931478 ID=FC931478; Name=FC931478; organism=Citrus clementina; type=EST; length=700bpback to top |