FC931478

Overview
NameFC931478
Unique NameFC931478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_PICTO (Peptide chain release factor subunit 1 OS=Picrophilus torridus GN=prf1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.200e-23
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 2
Query:  212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 634
            G GT +ISL +PP  Q+S V + L +E+ T+SNIKS+  R++VL AI S   RLK Y + P  GLV + G I T   + +  T   EP  PI   +Y CD+ FH + L   L+  D +G IV+D      G L G   EV+
Sbjct:   23 GRGTELISLYIPPDKQISDVVQYLREEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYKQPPETGLVFFVGHIATRGDQTEMYTKIIEPPEPIQTFMYKCDSNFHLEQLESQLKEKDIYGLIVIDRKEATVGFLKGTRIEVV 163          

HSP 2 Score: 21.1718 bits (43), Expect = 1.200e-23
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  661 KHGRGGQSALRF 696
            KH +GGQS+ RF
Sbjct:  173 KHHQGGQSSRRF 184          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_ARCFU (Peptide chain release factor subunit 1 OS=Archaeoglobus fulgidus GN=prf1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.283e-22
Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 634
            +G GT +I+L +PP   ++ V+  L  E   ASNIKS+  R +VL  I +   RLK + K P NG+V+ +G +V  +GKEK +T   EP  P+    Y CD+KF+ D L E+L     +G IV+D      G L G   EVL
Sbjct:   20 KGRGTELITLYIPPDKNIADVSNQLRSELSQASNIKSKQTRTNVLAGIEAILNRLKHFRKPPENGMVIISG-VVNINGKEKHITEIIEPPEPVPLYKYHCDSKFYLDPLKEMLTEKKLYGLIVLDRREATVGLLKGKRIEVL 160          

HSP 2 Score: 22.3274 bits (46), Expect = 1.283e-22
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  661 KHGRGGQSALRF 696
            KH +GGQS++RF
Sbjct:  170 KHRQGGQSSVRF 181          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_METTH (Peptide chain release factor subunit 1 OS=Methanobacterium thermoautotrophicum GN=prf1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 54/151 (35.76%), Postives = 85/151 (56.29%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT-DDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            RG GT ++S+ +PP  Q+S V K + +E   ++NIKS+  +++V  AI    QRLKL+ K P  GLV++ G +     G EK  T  FEP  PI   +Y C+++F+ + L E+LE  + +G  V+D       TL G   ++L   +  +P
Sbjct:   23 RGRGTELVSVYIPPDRQISDVAKHMREELSQSANIKSKQTKKNVQSAIEVIMQRLKLFPKPPEKGLVMFVGMVPRGGPGTEKMETYVFEPPEPIKTYIYHCNSEFYLEPLREMLEEKETYGLAVLDRKEATIATLKGKRIDILKTLTSGVP 173          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_METST (Peptide chain release factor subunit 1 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=prf1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.369e-21
Identity = 52/151 (34.44%), Postives = 85/151 (56.29%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT-DDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            +G GT ++S+ +PP  Q+S V K + DE G ++NIKS+  R++V  AI    QRLKL+ K P  GLV++ G I     G EK  T  F+P   +    Y CD++F  + L +++E  + +G +V+D   +   TL G   +++   +  +P
Sbjct:   23 KGRGTELVSVYIPPEKQISDVAKQMRDELGQSANIKSKQTRKNVQSAIEVIIQRLKLFPKPPEKGLVMFVGMIPKGGPGTEKMETYVFQPPEAVQTYTYHCDSQFFVEPLKQIIEYKEVYGVVVLDRKESTIATLRGKRIDIIKHLTSGVP 173          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_METS3 (Peptide chain release factor subunit 1 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=prf1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.278e-21
Identity = 54/151 (35.76%), Postives = 82/151 (54.30%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT-DDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            +G GT ++S+ +P   Q+S V K + DE G ++NIKS+  R++V  AI    QR++L+   P NGLVL+ G I     G EK  T  FEP  PI    Y C+N+F  + L  ++E  + +G  V+D       TL G    +L+  +  +P
Sbjct:   23 KGRGTELVSVYIPHDKQISDVGKQMRDELGQSANIKSKQTRKNVQSAIEVIMQRIRLFKAAPENGLVLFVGMIPRGGPGTEKMETYVFEPPEPITTYWYQCNNEFFLEPLEYMIEERETYGLAVIDRKEATIATLRGKKVNILNHLTSGVP 173          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_HALWD (Peptide chain release factor subunit 1 OS=Haloquadratum walsbyi (strain DSM 16790) GN=prf1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.214e-20
Identity = 57/151 (37.75%), Postives = 83/151 (54.97%), Query Frame = 2
Query:  212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            G+GT ++++ +PP  QVS V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NG+VL++G + T  G+   VT   E P  P+ +  Y CD+ F TD L ++L     FG IV+D      G L G   E +   S  +P
Sbjct:   29 GSGTQLVTIYIPPDRQVSDVVAHITQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTYPPDNGIVLFSGAVSTGGGQTTMVTRSLESPPEPVQSFRYHCDSDFLTDPLEDMLADKGLFGLIVLDRREANVGWLKGKRVEPVKSASSLVP 179          

HSP 2 Score: 21.1718 bits (43), Expect = 3.214e-20
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1
Query:  661 KHGRGGQSALRFA 699
            K  +GGQSA RFA
Sbjct:  181 KQRKGGQSAQRFA 193          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_METJA (Peptide chain release factor subunit 1 OS=Methanocaldococcus jannaschii GN=prf1 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 54/151 (35.76%), Postives = 83/151 (54.97%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIV-TDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            +G GT +ISL +P   ++S V + L +E   ASNIKS+  R++V  AI +  QRLKL  +    G+V++ G +  +  G EK  T   EP  PI   +Y CD++F+ + L E LE  D +G I++D N      + G    +L K +  +P
Sbjct:   23 KGKGTELISLYIPAGRRISDVAQHLREEMSQASNIKSKSTRKNVQSAIEAILQRLKLLKEPLEKGVVIFAGMVPRSGPGTEKMETYVIEPPEPIKTYIYRCDSEFYLEPLEEFLEDKDAYGVILVDRNEATIALVKGRNINILKKLTSGVP 173          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_METMA (Peptide chain release factor subunit 1 OS=Methanosarcina mazei GN=prf1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 52/150 (34.67%), Postives = 79/150 (52.67%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            +G  T +ISL +PP  Q+  VT  L DE G A+NIKS++ R +V GAI S   RL+  +KVP NG+V +TG +     K    +    P  PI    Y CD+ F+ + L ++L+  + +G +V+D      G L G   +     +  +P
Sbjct:   23 KGRSTELISLYIPPDKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIVPPDPITVYKYHCDSSFYLEPLEDMLKDKNTYGLLVLDRREATIGLLVGKRIQPFRNLTSTVP 172          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_METBU (Peptide chain release factor subunit 1 OS=Methanococcoides burtonii (strain DSM 6242) GN=prf1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20
Identity = 54/150 (36.00%), Postives = 78/150 (52.00%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            +G GT +ISL +PP  Q+S V   L +E   ASNIKS++ + +V GAI S   RL+ Y  VP NG+V +TG +     K    T   EP +PI    Y CD+ F    L ++L+    +G +V+D      G L+G   E     +  +P
Sbjct:   23 KGRGTELISLYIPPDKQISDVVSQLRNEHSQASNIKSKLTKTNVQGAIDSIMSRLR-YGTVPENGIVYFTGAVDVGANKTNMETTIVEPPQPIITYRYHCDSSFFLTPLEDMLKEAKTYGLLVLDRREATVGLLTGKQIEAFRNLTSTVP 171          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF11_METAC (Peptide chain release factor subunit 1-1 OS=Methanosarcina acetivorans GN=prf11 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.954e-20
Identity = 52/150 (34.67%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            +G  T +ISL +P   Q+  VT  L DE G A+NIKS++ R +V GAI S   RL+  +KVP NG+V +TG +     K    +    P  PI    Y CD+ F+ + L ++L+    FG +V+D      G L G   +     +  +P
Sbjct:   23 KGRSTELISLYIPADKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIIPPEPITVYKYHCDSSFYLEPLEDMLKDKSTFGLLVLDRREATIGLLVGKRIQAFRNLTSTVP 172          
The following BLAST results are available for this feature:
BLAST of FC931478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RF1_PICTO1.200e-2341.13Peptide chain release factor subunit 1 OS=Picrophi... [more]
RF1_ARCFU1.283e-2240.14Peptide chain release factor subunit 1 OS=Archaeog... [more]
RF1_METTH4.774e-2235.76Peptide chain release factor subunit 1 OS=Methanob... [more]
RF1_METST2.369e-2134.44Peptide chain release factor subunit 1 OS=Methanos... [more]
RF1_METS35.278e-2135.76Peptide chain release factor subunit 1 OS=Methanob... [more]
RF1_HALWD3.214e-2037.75Peptide chain release factor subunit 1 OS=Haloquad... [more]
RF1_METJA3.421e-2035.76Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METMA4.468e-2034.67Peptide chain release factor subunit 1 OS=Methanos... [more]
RF1_METBU5.836e-2036.00Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF11_METAC9.954e-2034.67Peptide chain release factor subunit 1-1 OS=Methan... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105E09EF PostHarvP1 Citrus clementina cDNA clone C34105E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931478 ID=FC931478; Name=FC931478; organism=Citrus clementina; type=EST; length=700bp
GACTTTTATTCTTATTACATCCTCCCTTCTCCTACGAGTTAAGCAAATTC
CATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCTTTTATCA
CTGTTTTAGAGTTACTGTATCCACTTTACAATGGCAGATGGTCAGGAGAC
TGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAAGCACTTG
AAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCATGCCTCCT
CGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGTTTGGAAC
TGCTTCAAACATCAAAAGCAGGGTCAATCGTCAATCTGTATTGGGTGCAA
TCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAGGTCCCTCCCAAT
GGGCTTGTGCTGTACACGGGAACAATTGTTACTGATGATGGGAAGGAAAA
GAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTAATGCATCTCTTT
ACCTCTGTGACAATAAGTTTCACACTGACGCTCTGAATGAACTGTTGGAG
TCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAATGGAACCCTTTT
TGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACAAGTTCAGTGTTG
ACCTTCCAAGAAACATGGAAGAGGTGGACAGTCAGCCCTTCGGTTTGCCC
back to top