FC931486

Overview
NameFC931486
Unique NameFC931486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_PICTO (50S ribosomal protein L2P OS=Picrophilus torridus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.053e-24
Identity = 76/211 (36.02%), Postives = 108/211 (51.18%), Query Frame = 3
Query:   81 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            MG+ I AQR+G GS V++S +H   G  ++       R+G  K  + +II  PGR  P+  +          +K   IA  G Y  Q ++ G   +  +G+V  + +IP+G+ V N+E   GD G   RA+G  A++ISH        +KLPSG  K     CRA +G +AG G  + P+LKAG      + K      VRGVAMN V HP
Sbjct:    1 MGKHIVAQRRGHGSLVYRSPSHRHLGDIKY------PRDGTYK--IEDIIQAPGRNTPVLLIR-----NEKNEKNYMIAFNGAYVNQEIHVGDIDSPAIGDVTYLANIPDGSYVYNIESIPGDGGKFCRAAGTAALVISHGA---YVSLKLPSGVNKEFHPRCRATVGFIAGSGARDIPILKAGTHIKYLQSKAKRPYTVRGVAMNAVNHP 195          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_BORRA (50S ribosomal protein L2 OS=Borrelia recurrentis (strain A1) GN=rplB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.053e-24
Identity = 76/212 (35.85%), Postives = 116/212 (54.72%), Query Frame = 3
Query:   84 GRVIRAQRKGAG--SVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            G+V RA R  +G  SV +    H++   ++R +DF  R+ + +   VA I +DP R   +A + +R        K   IA +G+  G  +  G  A + +GN LP+ +IP G +V N+E ++G  G L R +G YA+II+   D D   VKLPSG  ++I   C A +G+V         + KAG +  ++  +R   PKVRGVAMNP++HP
Sbjct:   37 GKVSRAGRDSSGRISVRRRGGGHKR---RYREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYRDG-----DKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHP 233          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_BORDL (50S ribosomal protein L2 OS=Borrelia duttonii (strain Ly) GN=rplB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.053e-24
Identity = 76/212 (35.85%), Postives = 116/212 (54.72%), Query Frame = 3
Query:   84 GRVIRAQRKGAG--SVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            G+V RA R  +G  SV +    H++   ++R +DF  R+ + +   VA I +DP R   +A + +R        K   IA +G+  G  +  G  A + +GN LP+ +IP G +V N+E ++G  G L R +G YA+II+   D D   VKLPSG  ++I   C A +G+V         + KAG +  ++  +R   PKVRGVAMNP++HP
Sbjct:   37 GKVSRAGRDSSGRISVRRRGGGHKR---RYREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYRDG-----DKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHP 233          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_THEAC (50S ribosomal protein L2P OS=Thermoplasma acidophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.065e-24
Identity = 75/211 (35.55%), Postives = 107/211 (50.71%), Query Frame = 3
Query:   81 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            MG+ I  QR+G GS V++S +H      + + +D G        V+ +IIH PGR APL  +          +K   IA  G + GQ +  G   ++  G    + +IP+G+ V N+E   GD G   R++G +A+++SH        +KLPSG  +     CRA +G VA  G  + P+LKAG   H  R K      VRGVAMN V HP
Sbjct:    1 MGKHIIPQRRGHGSLVYRSPSHRHI--TEVKHVDQGTY------VIKDIIHAPGRNAPLLELMGSDG-----KKAYQIAFTGAFVGQNIVAGNVDSVSPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHGQH---VTLKLPSGRMRDFDPRCRATLGVVAASGIKDPPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHP 195          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_DESAP (50S ribosomal protein L2 OS=Desulforudis audaxviator (strain MP104C) GN=rplB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.780e-23
Identity = 72/211 (34.12%), Postives = 106/211 (50.24%), Query Frame = 3
Query:   90 VIRAQRKGAGSVFKSHT--HHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            ++   RK AG  F+      HR G  +  +R +DF      + G VA I +DP R A +A V +        +K   +A  G+  GQ +  G +A + VGN LP+R+IP G ++ N+E + G    + R++G  A +++   + D   V+LPSG  ++ P  CRA IGQV         + KAG A           P VRGV MNPV+HP
Sbjct:   33 LVEPLRKKAGRNFQGRVTVRHRGGGHKRLYRVIDFKRNKDGVPGKVATIEYDPNRSANIALVNYADG-----EKRYIVAPAGLKVGQEIMSGPQADIKVGNALPLRNIPPGVLIHNIELYPGHGARVVRSAGGSAQLMA--KEGDYAHVRLPSGEVRLFPLDCRATIGQVGNVEHENIVIGKAGRARW-----LGIRPTVRGVVMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_EDWI9 (50S ribosomal protein L2 OS=Edwardsiella ictaluri (strain 93-146) GN=rplB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 66/183 (36.07%), Postives = 96/183 (52.46%), Query Frame = 3
Query:  162 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            Q+R +DF      +  VV  + +DP R A +A V ++       ++   +AA+G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + IP+ CRA +G+V       + L KAG A       R   P VRG AMNPV+HP
Sbjct:   61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAAKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGAYVTLRLRSGEMRKIPADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_BORGA (50S ribosomal protein L2 OS=Borrelia garinii GN=rplB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 72/221 (32.58%), Postives = 116/221 (52.49%), Query Frame = 3
Query:   51 QAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            + + L   ++    I  +R+G G       H RK    +R +DF  R+ + +   VA I +DP R A +A + ++       +K   I+ +G+  G  +  G  A + +GN LP+ +IP G  + N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +  ++  +R   PKVRGVAMNPV+HP
Sbjct:   36 KGKKLKSGRDSSGRISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTIHNIELNVGKGGQLVRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANVSIGKAGKS--RWLGRR---PKVRGVAMNPVDHP 233          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_MYCAP (50S ribosomal protein L2 OS=Mycoplasma agalactiae (strain PG2) GN=rplB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 71/217 (32.72%), Postives = 105/217 (48.39%), Query Frame = 3
Query:   66 SPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            +P K +  VI  +  G  +  K    H+ G  +  +R +DF      +   V  I +DP R A +  + +        +K   +A EG+  GQ V  G    ++VGN LP+ +IPEG  V NVE   G  G++AR++G  A I+  + D     ++L SG  + I + CRA IG V  G  +   L KAG + H         P VRG  MNP++HP
Sbjct:   29 APEKSL-LVILKKNSGRNNQGKITVRHQGGRVKRYYRIIDFKRNKDDIPATVKSIEYDPNRSANICLLAYADG-----EKRYILAPEGIKVGQKVVSGNNVDILVGNSLPLSNIPEGTFVHNVEMQPGGGGIIARSAGTSAQILGKDDDGKYVVLRLKSGEMRRILARCRATIGTVGNGEHSLVLLGKAGRSRH-----LGVRPTVRGSVMNPIDHP 234          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_THEPX (50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 73/218 (33.49%), Postives = 110/218 (50.46%), Query Frame = 3
Query:   78 EMGRVIRAQRKGAGSVFKSHT-HHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 710
            E   V+   + G  +V+   T  HR G    ++R +DF      + G VA I +DP R A +A + +        +K   IA  G+  G  +  G+   + VGN LP+R+IP G ++ N+E   G  G L RA+G  A +++   + D  +V++PSG  ++I + CRA IGQV+        + KAG         R+ W    P VRG AMNPV+HP
Sbjct:   30 EKSLVVTLTKTGGRNVYGRITVRHRGGGHKRKYRIIDFKRDKDGIPGKVAAIEYDPNRTAYIALIHYLDG-----EKRYIIAPYGLKVGDIIESGENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHP 231          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL2_THEP3 (50S ribosomal protein L2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 73/218 (33.49%), Postives = 110/218 (50.46%), Query Frame = 3
Query:   78 EMGRVIRAQRKGAGSVFKSHT-HHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 710
            E   V+   + G  +V+   T  HR G    ++R +DF      + G VA I +DP R A +A + +        +K   IA  G+  G  +  G+   + VGN LP+R+IP G ++ N+E   G  G L RA+G  A +++   + D  +V++PSG  ++I + CRA IGQV+        + KAG         R+ W    P VRG AMNPV+HP
Sbjct:   30 EKSLVVTLTKTGGRNVYGRITVRHRGGGHKRKYRIIDFKRDKDGIPGKVAAIEYDPNRTAYIALIHYLDG-----EKRYIIAPYGLKVGDIIESGENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHP 231          
The following BLAST results are available for this feature:
BLAST of FC931486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_PICTO1.053e-2436.0250S ribosomal protein L2P OS=Picrophilus torridus ... [more]
RL2_BORRA1.053e-2435.8550S ribosomal protein L2 OS=Borrelia recurrentis (... [more]
RL2_BORDL1.053e-2435.8550S ribosomal protein L2 OS=Borrelia duttonii (str... [more]
RL2_THEAC3.065e-2435.5550S ribosomal protein L2P OS=Thermoplasma acidophi... [more]
RL2_DESAP5.780e-2334.1250S ribosomal protein L2 OS=Desulforudis audaxviat... [more]
RL2_EDWI97.549e-2336.0750S ribosomal protein L2 OS=Edwardsiella ictaluri ... [more]
RL2_BORGA1.288e-2232.5850S ribosomal protein L2 OS=Borrelia garinii GN=rp... [more]
RL2_MYCAP1.682e-2232.7250S ribosomal protein L2 OS=Mycoplasma agalactiae ... [more]
RL2_THEPX3.747e-2233.4950S ribosomal protein L2 OS=Thermoanaerobacter sp.... [more]
RL2_THEP33.747e-2233.4950S ribosomal protein L2 OS=Thermoanaerobacter pse... [more]

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Properties
Property NameValue
Genbank descriptionC34105F05EF PostHarvP1 Citrus clementina cDNA clone C34105F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931486 ID=FC931486; Name=FC931486; organism=Citrus clementina; type=EST; length=711bp
GATCTTCCCAAAACACACACACCTATATATATATTCATCAGCCCGCCGCA
CAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGC
ACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTA
AGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTAC
CTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCC
GCTGGCCCGAGTTACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGG
AGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGC
GGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTGCCCGTTAGATCTAT
CCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCATGTTGGTGATCGCG
GTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAAC
CCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGAT
TATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGTTGCCGGCGGAGGGA
GGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGA
GTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGT
GGAGCATCCTC
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