FC931503

Overview
NameFC931503
Unique NameFC931503
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.575e-25
Identity = 77/196 (39.29%), Postives = 105/196 (53.57%), Query Frame = 2
Query:   68 VSNKRVILSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQI--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSTASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLK 646
            V  K   L  +  G P +SD ++ +  +  LK  E     VLL+ L+LS DPYMR    +L           G  + G  VA+V++S +  +    +V   +GW  + +     +  L+      +PLS   G +GMPG+TAY GL EVC  K GE V VS A+GAVG +VGQ AKL GC VVG+AGS EK+  LK
Sbjct:    2 VKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGE-----VLLEALFLSVDPYMRIASKRLKE---------GAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK 183          
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 75/196 (38.27%), Postives = 106/196 (54.08%), Query Frame = 2
Query:   68 VSNKRVILSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQI--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSTASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLK 646
            V  K   L  +  G+P  S+ ++ +  +  LK  E     VLL+ L+L+ DPYMR    KL           G+ + G  VA+V++S +  +    +V    GW  +S+     +  L+      +PLS   G +GMPG+TAY GL ++C  K GE V V+ A+GAVG +VGQ AKL GC VVG+AGS EKV  LK
Sbjct:    2 VRAKSWTLKKHFVGYPTPSNFELKTVELPPLKNGE-----VLLEALFLTVDPYMRIAARKLKE---------GDMMMGEQVARVIESKNAAFPTGTIVVALLGWTTHSISDGKNLERLLAEWPDTLPLSLTLGTVGMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVACLK 183          
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 67/213 (31.46%), Postives = 109/213 (51.17%), Query Frame = 2
Query:   77 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKI--QHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSTASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNSLDLMTLLLQEEADL 694
            +RV+L++     G P   + ++   ++   V EG    V ++ LYLS DPYMR RM++     ++  +   + ++G GV  + +S H N+ K D V  F    +  ++    IL K+  Q  D  LSY+ G +GMPG+T+  G+ E    +    + + VS A+GA G L GQ  +L GC  VVG  G+ EK   L + L     +  +E ++
Sbjct:    4 QRVVLNSRPGKNGHPVAENFRVEEVNLPDCVNEGQ---VQVRTLYLSVDPYMRCRMNEDTGSDYITPWQLSQVVDGGGVGIIEESKHTNFMKGDFVTSFYWPWQTKVILDGNILEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGTPEKCLFLTSELGFDAAINYKEGNV 213          
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: PTGR2_PONAB (Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 63/200 (31.50%), Postives = 101/200 (50.50%), Query Frame = 2
Query:   77 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKI--QHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSTASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNSL 655
            +RV+L++     G P   + ++    +   + EG    V ++ LYLS DPYMR RM++     ++  +   + ++G G+  + +S H N  K D V  F    +  ++     L K+  Q  D  LSY+ G +GMPG+T+  G+ E    +    + + VS A+GA G + GQ   L GC  VVG  G+ EK  LL + L
Sbjct:    4 QRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQ---VQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHLLGCSRVVGICGTHEKCVLLTSEL 200          
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: PTGR2_HUMAN (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 62/200 (31.00%), Postives = 100/200 (50.00%), Query Frame = 2
Query:   77 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKI--QHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSTASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNSL 655
            +RV+L++     G P   + ++    +   + EG    V ++ LYLS DPYMR RM++     ++  +   + ++G G+  + +S H N  K D V  F    +  ++     L K+  Q  D  LSY+ G +GMPG+T+  G+ E    +    + + VS A+GA G + GQ     GC  VVG  G+ EK  LL + L
Sbjct:    4 QRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQ---VQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL 200          
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: PTGR2_RAT (Prostaglandin reductase 2 OS=Rattus norvegicus GN=Ptgr2 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 63/200 (31.50%), Postives = 100/200 (50.00%), Query Frame = 2
Query:   77 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGF-TGWEEYSLVTAPQI-LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSTASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNSL 655
            +RV+L +     G P   + ++   S+   + EG    V ++ LYLS DPYMR +M++     ++  +   +  +G G+  + +S H   AK D V  F   W+  +++    +  +  Q  D  LSY+ G +GMPG+T+  G+ E    S    + + VS A+GA G L GQ   L GC  VVG  G+ EK   L + L
Sbjct:    4 QRVVLDSRPGKNGNPVAENFRVEEVSLPDTINEGQ---VRVRTLYLSVDPYMRCKMNEETGADYLAPWQLAQVADGGGLGVIEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHVSAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTHEKCLFLTSEL 200          
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: PTGR2_MOUSE (Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 63/200 (31.50%), Postives = 101/200 (50.50%), Query Frame = 2
Query:   77 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGF-TGWEEYSLVTAPQI-LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSTASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNSL 655
            +RV+L++     G P   + ++   S+   + EG    V ++ LYLS DPYMR +M++     ++  +   +  +G G+  V +S H    K D V  F   W+  +++    +  +  Q  D  LSY+ G +GMPG+T+  G+ E    S    + + VS A+GA G L GQ   L GC  VVG  G++EK   L + L
Sbjct:    4 QRVVLNSRPGKNGNPVAENFRVEEFSLPDALNEGQ---VQVRTLYLSVDPYMRCKMNEDTGTDYLAPWQLAQVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL 200          
The following BLAST results are available for this feature:
BLAST of FC931503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PTGR1_CAVPO4.575e-2539.29Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]
PTGR1_PIG5.975e-2538.27Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]
PTGR2_BOVIN8.357e-1931.46Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
PTGR2_PONAB7.822e-1731.50Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2... [more]
PTGR2_HUMAN2.276e-1631.00Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2... [more]
PTGR2_RAT5.070e-1631.50Prostaglandin reductase 2 OS=Rattus norvegicus GN=... [more]
PTGR2_MOUSE6.621e-1631.50Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2... [more]

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Properties
Property NameValue
Genbank descriptionC34105G10EF PostHarvP1 Citrus clementina cDNA clone C34105G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931503 ID=FC931503; Name=FC931503; organism=Citrus clementina; type=EST; length=699bp
GGCAACAATTCTGATTTTCCTGCCAGAGAAAAAAAACTGAGAAACAATGG
CGGCTGAACAAGAAGCTGTGAGCAATAAGCGGGTGATTCTGAGCAACTAT
GTGACAGGTTTTCCAAAAGAATCAGACATGAAGATAACAAGTGGATCAAT
AAAGCTGAAGGTAGCAGAGGGTTCAAAAGACACAGTGCTTTTGAAGAATC
TTTATCTTTCTTGTGATCCTTACATGCGATGGCGTATGAGCAAGCTTGAT
AGACCTTCTTTTGTTGATTCATTCCATCCTGGTGAGCCTATAAATGGTTA
TGGGGTAGCTAAAGTTTTGGATTCTACACATCCAAATTATGCAAAAGATG
ACTTGGTTTGGGGCTTTACCGGGTGGGAGGAGTACAGTCTCGTTACAGCC
CCACAGATTTTGATTAAAATTCAGCATACAGATGTGCCCCTTTCATACTA
TACTGGAATCCTTGGTATGCCTGGTGTGACCGCATACGCTGGTTTATACG
AAGTTTGCTCTCCGAAGAAAGGTGAGTATGTCTATGTATCTACAGCATCT
GGAGCTGTTGGTCAGCTTGTTGGCCAATTTGCAAAATTGGCTGGTTGCTA
TGTTGTTGGAAGTGCTGGAAGCAAGGAAAAGGTCGATTTGTTGAAGAACA
GTTTGGATTTGATGACGCTTTTACTACAGGAAGAAGCAGACTTGGATGC
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