FC931534

Overview
NameFC931534
Unique NameFC931534
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACTG_ANSAN (Actin, cytoplasmic 2 OS=Anser anser anser GN=ACTG1 PE=2 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 6.707e-114
Identity = 200/229 (87.34%), Postives = 216/229 (94.32%), Query Frame = 2 
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSI
Sbjct:  141 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 369
[Close]
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACTB_TRIVU (Actin, cytoplasmic 1 OS=Trichosurus vulpecula GN=ACTB PE=1 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 6.707e-114
Identity = 200/229 (87.34%), Postives = 216/229 (94.32%), Query Frame = 2 
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSI
Sbjct:  141 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 369
[Close]
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACTB_SPECI (Actin, cytoplasmic 1 OS=Spermophilus citellus GN=ACTB PE=2 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 6.707e-114
Identity = 200/229 (87.34%), Postives = 216/229 (94.32%), Query Frame = 2 
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSI
Sbjct:  141 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 369
[Close]
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACTB_SHEEP (Actin, cytoplasmic 1 OS=Ovis aries GN=ACTB PE=2 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 6.707e-114
Identity = 200/229 (87.34%), Postives = 216/229 (94.32%), Query Frame = 2 
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSI
Sbjct:  141 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 369
[Close]
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACTB_SALSA (Actin, cytoplasmic 1 OS=Salmo salar GN=actb PE=2 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 6.707e-114
Identity = 200/229 (87.34%), Postives = 216/229 (94.32%), Query Frame = 2 
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEIT+LAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSI
Sbjct:  141 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMGTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITSLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 369
[Close]
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACTB_RAT (Actin, cytoplasmic 1 OS=Rattus norvegicus GN=Actb PE=1 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 6.707e-114
Identity = 200/229 (87.34%), Postives = 216/229 (94.32%), Query Frame = 2 
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSI
Sbjct:  141 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 369
[Close]
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACTB_RABIT (Actin, cytoplasmic 1 OS=Oryctolagus cuniculus GN=ACTB PE=2 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 6.707e-114
Identity = 200/229 (87.34%), Postives = 216/229 (94.32%), Query Frame = 2 
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSI
Sbjct:  141 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 369
[Close]
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACTB_PONAB (Actin, cytoplasmic 1 OS=Pongo abelii GN=ACTB PE=2 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 6.707e-114
Identity = 200/229 (87.34%), Postives = 216/229 (94.32%), Query Frame = 2 
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSI
Sbjct:  141 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 369
[Close]
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACTB_PIG (Actin, cytoplasmic 1 OS=Sus scrofa GN=ACTB PE=2 SV=2)

HSP 1 Score: 409.838 bits (1052), Expect = 6.707e-114
Identity = 200/229 (87.34%), Postives = 216/229 (94.32%), Query Frame = 2 
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSI
Sbjct:  141 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 369
[Close]
BLAST of FC931534 vs. ExPASy Swiss-Prot
Match: ACTB_PANTR (Actin, cytoplasmic 1 OS=Pan troglodytes GN=ACTB PE=2 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 6.707e-114
Identity = 200/229 (87.34%), Postives = 216/229 (94.32%), Query Frame = 2 
Query:    2 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 688
            SLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSI
Sbjct:  141 SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 369
The following BLAST results are available for this feature:
BLAST of FC931534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490
Match NameE-valueIdentityDescription
ACTG_ANSAN6.707e-11487.34Actin, cytoplasmic 2 OS=Anser anser anser GN=ACTG1... [more]
ACTB_TRIVU6.707e-11487.34Actin, cytoplasmic 1 OS=Trichosurus vulpecula GN=A... [more]
ACTB_SPECI6.707e-11487.34Actin, cytoplasmic 1 OS=Spermophilus citellus GN=A... [more]
ACTB_SHEEP6.707e-11487.34Actin, cytoplasmic 1 OS=Ovis aries GN=ACTB PE=2 SV... [more]
ACTB_SALSA6.707e-11487.34Actin, cytoplasmic 1 OS=Salmo salar GN=actb PE=2 S... [more]
ACTB_RAT6.707e-11487.34Actin, cytoplasmic 1 OS=Rattus norvegicus GN=Actb ... [more]
ACTB_RABIT6.707e-11487.34Actin, cytoplasmic 1 OS=Oryctolagus cuniculus GN=A... [more]
ACTB_PONAB6.707e-11487.34Actin, cytoplasmic 1 OS=Pongo abelii GN=ACTB PE=2 ... [more]
ACTB_PIG6.707e-11487.34Actin, cytoplasmic 1 OS=Sus scrofa GN=ACTB PE=2 SV... [more]
ACTB_PANTR6.707e-11487.34Actin, cytoplasmic 1 OS=Pan troglodytes GN=ACTB PE... [more]

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Properties
Property NameValue
Genbank descriptionC34106B07EF PostHarvP1 Citrus clementina cDNA clone C34106B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931534 ID=FC931534; Name=FC931534; organism=Citrus clementina; type=EST; length=690bp
ATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGATTCTGGTG
ATGGTGTGTCTCATACTGTACCAATTTATGAGGGATATGCCCTTCCTCAT
GCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGATGCATTGAT
GAAGATTCTTACTGAGAGAGGTTACATGTTTACCACCACAGCCGAACGGG
AAATTGTCCGTGACATGAAGGAGAAGCTTGCTTATGTTGCCCTAGACTAT
GAGCAAGAACTTGAGACTGCCAAGAGCAGCTCATCTGTTGAGAAGAACTA
TGAGCTGCCTGATGGCCAGATCATCACCATTGGAGCTGAAAGATTCCGTT
GCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGAATGGAAGCTGCTGGT
ATTCATGAGACTACCTACAACTCCATCATGAAGTGTGATGTGGATATTAG
AAAGGATCTGTATGGTAACATTGTTCTCAGTGGGGGTTCAACTATGTTCC
CCGGTATTGCCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGC
AGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTG
GATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGA
TCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCATTGT
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