FC931555

Overview
NameFC931555
Unique NameFC931555
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.559e-16
Identity = 48/140 (34.29%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  240 VLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG*T 656
            VL+AE + +  +D + +    V+    +S EEL  ++   +A++VRS TKV+ +V ++ A  LK++GRAGVG+DN+D+ AAT+ G +                        R + QAD S   GKW+RK+++G+ L G T
Sbjct:    3 VLVAEPISEEAIDYMRKNGLEVEVKTGMSREELIREVPKYEAIVVRSQTKVDAEVIQA-AKNLKIIGRAGVGVDNIDINAATQRGIVVVNAPGGNTISTAEHAIALMLAAARKIPQADRSVKEGKWERKKFMGIELRGKT 141          
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_PIG (D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16
Identity = 55/138 (39.86%), Postives = 73/138 (52.90%), Query Frame = 3
Query:  240 VLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG 650
            VLI++ L     ++L +    V    NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS   GKW+RK+++G  L G
Sbjct:    9 VLISDSLDPCCREILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTSDVI-NAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQIPQATASMKDGKWERKKFMGTELNG 145          
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_BOVIN (D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.732e-15
Identity = 48/112 (42.86%), Postives = 62/112 (55.36%), Query Frame = 3
Query:  315 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG 650
            NLS EEL  ++  C+ LIVRS TKV  D+  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS   GKW+RK+++G  L G
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTSDII-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAAASMKDGKWERKKFMGTELNG 145          
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.621e-13
Identity = 50/142 (35.21%), Postives = 71/142 (50.00%), Query Frame = 3
Query:  234 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG*TL 659
            P VLIA+KL Q+ +  L +   V         +L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +A+ADAS  A  W+R  + G  + G T+
Sbjct:    4 PVVLIADKLAQSTVAALGDQVEVRWVDGPDRTKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIAEADASLRAHIWKRSSFSGTEIFGKTV 144          
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.341e-12
Identity = 48/141 (34.04%), Postives = 71/141 (50.35%), Query Frame = 3
Query:  240 VLIAEKLGQAGLDLLNEFANVDCAY-NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG*TL 659
            VL+++K+   GL  L E   ++    N++  E   ++   DAL+VRS TKV  D+F      LK+VGRAGVG+DN+D+  AT+ G +                        R++ QA+ S  + +W R  YVG  L G TL
Sbjct:    4 VLVSDKMSNDGLQPLIESDFIEIVQKNVADAE--DELHTFDALLVRSATKVTEDLFNKMTS-LKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVGSELYGKTL 141          
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.812e-12
Identity = 47/142 (33.10%), Postives = 68/142 (47.89%), Query Frame = 3
Query:  234 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG*TL 659
            P VLIA+KL  + +  L +   V        ++L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +  ADAS     W+R  + G  + G T+
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTV 144          
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.812e-12
Identity = 47/142 (33.10%), Postives = 68/142 (47.89%), Query Frame = 3
Query:  234 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG*TL 659
            P VLIA+KL  + +  L +   V        ++L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +  ADAS     W+R  + G  + G T+
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTV 144          
The following BLAST results are available for this feature:
BLAST of FC931555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SERA_ARCFU4.559e-1634.29D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
SERA_PIG5.954e-1639.86D-3-phosphoglycerate dehydrogenase OS=Sus scrofa G... [more]
SERA_BOVIN1.732e-1542.86D-3-phosphoglycerate dehydrogenase OS=Bos taurus G... [more]
SERA_MYCLE1.621e-1335.21D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_BACSU2.341e-1234.04D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
SERA_MYCTU6.812e-1233.10D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO6.812e-1233.10D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionC34106D08EF PostHarvP1 Citrus clementina cDNA clone C34106D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931555 ID=FC931555; Name=FC931555; organism=Citrus clementina; type=EST; length=664bp
GGCTCTCGCTCCACTGCACTCCCTCTCCCCATACGACGCCGCTTTAACCA
CCCCGAAAAATGGCCACGTCAGCAGCCTCCTGCGCTGCCTCCCTCCGTCA
GCCTTCCCTCAAGCTATCACTGTCTTCCAAACACTCTCTTTCCCCTCTAT
TCTCCGTCTCCTTCAACCACAAGCGGGCCCCGCCGCGGCTCGTAATAATC
GCATCCGCCGCCGCCGACGGCATCTCCTCAAAACCGACCGTTTTGATCGC
CGAGAAGCTCGGACAGGCCGGCTTGGATCTTCTCAACGAGTTCGCCAACG
TGGACTGCGCATACAACTTGTCGCCAGAGGAGCTCTGCACGAAGATCTCG
CTCTGCGACGCGCTGATCGTGCGCAGCGGCACGAAGGTCAATCGCGACGT
GTTCGAGTCGTCAGCTGGAAGGTTGAAGGTCGTTGGGAGAGCCGGTGTTG
GTATTGATAATGTGGATCTGGCTGCGGCTACTGAGTTTGGTTGCTTGGTT
GTGAACGCGCCGACGGCGAATACCGTTGCGGCTGCTGAGCATGGGATCGC
GCTTTTGGCTGCCATGGCTAGAAATGTCGCCCAGGCTGATGCCTCTNGTT
AGGCTGGAAAGTGGCAAAGGAAACAATATGTGGGTGTCTCCCTTGTGGGN
TAAACACTTGCTGT
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