FC931564

Overview
NameFC931564
Unique NameFC931564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931564 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 96/283 (33.92%), Postives = 126/283 (44.52%), Query Frame = 3
Query:    3 GIQGPFYQGTGTFHRRDVVYG-----------------LC-------------------------------LDQIEH--QGNIVEDE---------LLKKFGNSKEFIKSAAQTLEGKTGGY--SSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFL 668
            GIQGP Y GTG    R  +YG                 LC                               LD IE   +G   +DE         L K+FG S  F+ S       + GG   S+     L EA  V  CGYE  S WG E+G +YG+  ED LTG  +H++GWRS YC+P   AF G A  +    + Q  RWA G +EILFS+  PI     G+L+F +  AY+    + + SIP L Y  LPA C+ TN   +P++     +  L+LFL
Sbjct:  607 GIQGPVYVGTGCVFNRTALYGYEPPIKVKHKKPSLLSKLCGGSRKKNSKAKKESDKKKSGRHTDSTVPVFNLDDIEEGVEGAGFDDEKALLMSQMSLEKRFGQSAVFVASTLM----ENGGVPPSATPENLLKEAIHVISCGYEDKSDWGMEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYNGRLKFLERFAYVNTTIYPITSIPLLMYCTLPAVCLFTNQFIIPQISNIASIWFLSLFL 885          
BLAST of FC931564 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.192e-30
Identity = 79/222 (35.59%), Postives = 114/222 (51.35%), Query Frame = 3
Query:   39 FHRRDVVYGL-CLDQIEHQGNIVEDELLKKFGNSKEFIKSAAQTLEGKTGGY--SSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLE 695
            F   D+  GL   D++E    + +    K+FG S  FI S       + GG   ++N S  + EA  V  CGYE  + WG E+G +YG+  ED LTG  +H +GW+S YC+P   AF G A  +    + Q  RWA G +EI FS+  P+     GKL+  + LAY+  + +   SIP L Y  +PA C++T    +P +     +  LALFL      +LE
Sbjct:  660 FDLEDIEEGLEGYDELEKSSLMSQKNFEKRFGMSPVFIASTLM----ENGGLPEATNTSSLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFRMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYAWGGKLKILERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTINNFASIWFLALFLSIIATAILE 877          
BLAST of FC931564 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 92/279 (32.97%), Postives = 125/279 (44.80%), Query Frame = 3
Query:    3 GIQGPFYQGTGTFHRRDVVYG---------------LC-------------------------------LDQIEH--QGNIVEDE---------LLKKFGNSKEFIKSAAQTLEGKTGGYSSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFL 668
            G+QGP Y GTG    R  +YG               LC                               L+ IE   +G+  +DE         L K+FG S  F+ S      G     S+     L EA  V  CGYE  S WG E+G +YG+  ED LTG  +H++GWRS YC+P   AF G A  +    + Q  RWA G +EILFS+  PI     G+L+F +  AY+    + L SIP L Y  LPA C++T    +P++     +  ++LFL
Sbjct:  617 GLQGPVYVGTGCVFNRTALYGYEPPIKQKRPGYFSSLCGGRKKTKKSKEKSTEKKKSHKHVDSSVPVFNLEDIEEGIEGSGFDDEKSLLMSQMSLEKRFGQSSVFVASTLMEYGGVP--QSATPESLLKEAIHVISCGYEDKSDWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYINTTIYPLTSIPLLLYCILPAICLLTGKFIIPEISNFASIWFISLFL 893          
BLAST of FC931564 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 92/279 (32.97%), Postives = 125/279 (44.80%), Query Frame = 3
Query:    3 GIQGPFYQGTGTFHRRDVVYG---------------LC-------------------------------LDQIEH--QGNIVEDE---------LLKKFGNSKEFIKSAAQTLEGKTGGYSSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFL 668
            G+QGP Y GTG    R  +YG               LC                               L+ IE   +G+  +DE         L K+FG S  F+ S      G     S+     L EA  V  CGYE  S WG E+G +YG+  ED LTG  +H++GWRS YC+P   AF G A  +    + Q  RWA G +EILFS+  PI     G+L+F +  AY+    + L SIP L Y  LPA C++T    +P++     +  ++LFL
Sbjct:  617 GLQGPVYVGTGCVFNRTALYGYEPPIKQKRPGYFSSLCGGRKKTKKSKEKSTEKKKSHKHVDSSVPVFNLEDIEEGIEGSGFDDEKSLLMSQMSLEKRFGQSSVFVASTLMEYGGVP--QSATPESLLKEAIHVISCGYEDKSDWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYINTTIYPLTSIPLLLYCILPAICLLTGKFIIPEISNFASIWFISLFL 893          
BLAST of FC931564 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 88/286 (30.77%), Postives = 127/286 (44.41%), Query Frame = 3
Query:    3 GIQGPFYQGTGTFHRRDVVYGL------------------CL----------------------------------DQIEHQGNIVEDELLKKFGNSKEFIKSAAQTLEGKTGGYSSNISRS--LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPI-LATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLE 695
            GIQGP Y GTGT  RR  +YG                   CL                                  D+ +    I +    K FG S  FI+S       + GG   +++ S  + EA  V  CGYE  + WG E+G +YG+  ED LTG  +H +GWRS YC+P+  AF G A  +    + Q  RWA G +EI  S+  P+      G+L+  Q LAY+  + +   S+P + Y  LPA C++T    +P +     ++ L LF+   L ++LE
Sbjct:  532 GIQGPVYVGTGTVFRRQALYGYSPPSKPRILPQSSSSSCCCLTKKKQPQDPSEIYKDAKREELDAAIFNLGDLDNYDEYDRSMLISQTSFEKTFGLSTVFIESTLM----ENGGVPDSVNPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGCSGGRLKLLQRLAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASMLFLGLFISIILTSVLE 813          
BLAST of FC931564 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.310e-29
Identity = 74/199 (37.19%), Postives = 108/199 (54.27%), Query Frame = 3
Query:   99 IVEDELLKKFGNSKEFIKSAAQTLEGKTGGYSSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLE 695
            + +  L K+FG S  FI  AA  +E      ++N    L EA  V  CGYE  + WG E+G +YG+  ED LTG  +H++GW S YC+P   AF G A  +    + Q  RWA G +EIL S+  PI     G+L+  + +AY+  + + + SIP L Y  LPA+C+ITN+  +P++     L  + LF       +LE
Sbjct:  700 VSQKRLEKRFGQSPVFI--AATFMEQGGLPSTTNPLTLLKEAIHVISCGYEAKTDWGKEIGWIYGSVTEDILTGFKMHARGWISIYCVPSRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLLAYCMLPAFCLITNTFIIPEISNLASLCFMLLFASIYASAILE 896          
BLAST of FC931564 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.310e-29
Identity = 91/280 (32.50%), Postives = 124/280 (44.29%), Query Frame = 3
Query:    3 GIQGPFYQGTGTFHRRDVVYG----------------LC-------------------------------LDQIEH--QGNIVEDE---------LLKKFGNSKEFIKSAAQTLEGKTGGYSSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFL 668
            GIQGP Y GTG    R  +YG                LC                               L+ IE   +G   +DE         L K+FG S  F+ S      G     S+     L EA  V  CGYE  + WG E+G +YG+  ED LTG  +H++GWRS YC+P   AF G A  +    + Q  RWA G +EILFS+  PI     G+L+F +  AY+    + L SIP L Y  LPA C++T    +P++     +  ++LF+
Sbjct:  624 GIQGPVYVGTGCVFNRTALYGYEPPIKQKKKGSFLSSLCGGRKKASKSKKKSSDKKKSNKHVDSAVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAAFVASTLMEYGGVP--QSATPESLLKEAIHVISCGYEDKTEWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYINTTIYPLTSIPLLIYCVLPAICLLTGKFIIPEISNFASIWFISLFI 901          
BLAST of FC931564 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.057e-29
Identity = 74/207 (35.75%), Postives = 112/207 (54.11%), Query Frame = 3
Query:   81 IEHQGNIVEDELLKKFGNSKEFIKSAAQTLEGKTGGYSSNISRS--LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLE 695
            +E     ++ +L KKFG S  F+ SA      + GG + N S +  L EA +V  CGYE  + WG E+G +YG+  ED LTG  +HS GWRS YC P   AF G A  +    + Q  RWA G +EI  S+  PI     G L++ + L+Y+  + +   S+P + Y +LPA C++T    +P++     ++ +ALF    +  +LE
Sbjct:  712 VEQSTEAMQMKLEKKFGQSPVFVASARM----ENGGMARNASPACLLKEAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHSHGWRSVYCTPKLAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERLSYINSVVYPWTSLPLIVYCSLPAICLLTGKFIVPEISNYASILFMALFSSIAITGILE 914          
BLAST of FC931564 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 74/209 (35.41%), Postives = 110/209 (52.63%), Query Frame = 3
Query:   39 FHRRDVVYGLCLDQIEHQGNIVEDELLKKFGNSKEFIKSAAQTLEGKTGGYSSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALF 665
            F+  D+  G+   + E    + +  L K+FG S  FI S   T  G     S+N +  L EA  V  CGYE  + WG E+G +YG+  ED LTG  +H++GW S YC+P    F G A  +    + Q  RWA G +EIL S+  PI     G+L+  + LAY+  + + + SIP + Y  LPA C++TN   +P++     +  + LF
Sbjct:  688 FNMEDIEEGIEGYEDERSVLMSQKRLEKRFGQSPIFIASTFMTQGGIPP--STNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPCFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLIAYCVLPAICLLTNKFIIPEISNYAGMFFILLF 894          
BLAST of FC931564 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 74/209 (35.41%), Postives = 110/209 (52.63%), Query Frame = 3
Query:   39 FHRRDVVYGLCLDQIEHQGNIVEDELLKKFGNSKEFIKSAAQTLEGKTGGYSSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALF 665
            F+  D+  G+   + E    + +  L K+FG S  FI S   T  G     S+N +  L EA  V  CGYE  + WG E+G +YG+  ED LTG  +H++GW S YC+P    F G A  +    + Q  RWA G +EIL S+  PI     G+L+  + LAY+  + + + SIP + Y  LPA C++TN   +P++     +  + LF
Sbjct:  688 FNMEDIEEGIEGYEDERSVLMSQKRLEKRFGQSPIFIASTFMTQGGIPP--STNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPCFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLIAYCVLPAICLLTNKFIIPEISNYAGMFFILLF 894          
The following BLAST results are available for this feature:
BLAST of FC931564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA3_ARATH4.803e-3033.92Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA4_ARATH8.192e-3035.59Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA2_ORYSJ1.070e-2932.97Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI1.070e-2932.97Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA8_ARATH4.066e-2930.77Cellulose synthase A catalytic subunit 8 [UDP-form... [more]
CESAA_ARATH5.310e-2937.19Probable cellulose synthase A catalytic subunit 10... [more]
CESA8_ORYSJ5.310e-2932.50Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA6_ARATH9.057e-2935.75Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CESA1_ORYSJ1.183e-2835.41Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI1.183e-2835.41Probable cellulose synthase A catalytic subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34106E08EF PostHarvP1 Citrus clementina cDNA clone C34106E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931564 ID=FC931564; Name=FC931564; organism=Citrus clementina; type=EST; length=706bp
GGGGAATTCAAGGACCTTTCTATCAGGGTACAGGAACTTTTCATAGACGA
GATGTTGTATATGGTCTATGCCTCGATCAGATTGAACATCAAGGAAATAT
AGTGGAAGATGAGCTGCTGAAAAAATTCGGAAATTCAAAAGAATTCATCA
AATCAGCTGCTCAGACTTTGGAAGGGAAGACAGGAGGTTATTCAAGTAAC
ATATCGAGATCGCTTGATGAAGCACACCGAGTTGCAGATTGTGGTTATGA
GTATGGTAGTAGCTGGGGTGATGAGGTGGGGTGCTTGTATGGCGCCACAG
CAGAAGATAACTTAACTGGCTTGGTGATCCATTCAAAAGGCTGGAGATCA
GGCTACTGCTTGCCGATCCCACATGCCTTTCTTGGCTGTGCGTCTCCCAG
CGGCCCTGCTGGGATGAGACAACAGAAAAGGTGGGCCACGGGACTGCTTG
AAATCCTATTCAGCAAACGTAACCCCATATTGGCTACTCTCATCGGGAAG
CTCCAATTTCGACAATGTTTGGCTTATTTGTGGATCCTTACTTGGGGCTT
GCGCTCAATTCCCGAGCTGTGCTACATTGCCCTTCCAGCTTATTGCATCA
TCACCAACTCCACTTTCCTGCCAAAGGTCCAGGAACCAACCGTATTGATC
CCTCTTGCACTTTTTTTGATCTACAAATTATATACTCTATTAGAGTACAT
TCAAGC
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