FC931572

Overview
NameFC931572
Unique NameFC931572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: METZ_PSEAE (O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa GN=metZ PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.006e-40
Identity = 82/207 (39.61%), Postives = 129/207 (62.32%), Query Frame = 3
Query:   57 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCISGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI 677
            + GI       +D+   EAA   N   LFF ESP+NP    VD+  ++++ H KGA++ +D  F TP  Q+ L LGAD+V+HSATK+I G    + G ++G  + + ++       G  L+P  A+L ++G++TL +R+Q  +++AL +A+ LE  P ++RV+Y GL SHP+H +A +Q +GFG VVSF+V G   A  +FIDA ++
Sbjct:  135 RFGIQVDYPPLSDLAAWEAACKPNT-KLFFVESPSNPLAELVDIAALAEIAHAKGALLAVDNCFCTPALQQPLKLGADVVIHSATKYIDGQGRGMGGVVAGRGEQMKEVVGFLRTAGPTLSPFNAWLFLKGLETLRIRMQAHSASALALAEWLERQPGIERVYYAGLPSHPQHELARRQQSGFGAVVSFDVKGGRDAAWRFIDATRM 340          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: METC_COXBU (Cystathionine beta-lyase OS=Coxiella burnetii GN=metC PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.822e-40
Identity = 82/224 (36.61%), Postives = 139/224 (62.05%), Query Frame = 3
Query:   30 RIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGC--ISGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS 695
            R+F        G++ + +D  D   +  A+      + + ESP+NP L+ VD+  ++++  +K  I   D TFATP+ Q+ L LG D+V HSATK++ GH+D++ G   +  ++ L  Q++ L + +G    P  +++++RG+KTL +R+++    A+++A+ LE HPKVKRV+YPGL SHP+H IA +QM  FGG++S E+  DL  T K ++  ++  +A S
Sbjct:  111 RLFENVRKRSAGLSFSFVDFTDENKVREAVTAKT-KMLWVESPSNPRLKIVDLAKIAEIAKEKNIIAVADNTFATPIIQRPLELGFDIVTHSATKYLNGHSDIIGGVAVVGDNKTLAEQLKYLQNAIGAIAAPFDSFMVLRGLKTLAIRMERHCENAMQLAQWLEKHPKVKRVYYPGLPSHPQHSIAKKQMRYFGGMISVELKCDLNETKKVLERCQLFTLAES 333          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: METC_BACSU (Cystathionine beta-lyase metC OS=Bacillus subtilis GN=metC PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.516e-40
Identity = 88/231 (38.10%), Postives = 131/231 (56.71%), Query Frame = 3
Query:    6 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCIS-GSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS 695
            T D Y  T   +  VL + GI  T +D  D   +  ++  N   + + E+P+NP L   D+K V  L  + G +  +D TF TP  Q+ L LG D+VLHSATKF+ GH+DVL+G  +   E+L  Q+  L +  G  L     +L++RG+KTL +R+++ + TA R+A+  + HP VKRV+YPGL  HP       Q TG G V+SFE++    A  K ++ + +P  A S
Sbjct:   99 TEDVYGGTFRMVTEVLTRFGIEHTFVDMTDRNEVARSIKPNT-KVIYMETPSNPTLGITDIKAVVQLAKENGCLTFLDNTFMTPALQRPLDLGVDIVLHSATKFLSGHSDVLSGLAAVKDEELGKQLYKLQNAFGAVLGVQDCWLVLRGLKTLQVRLEKASQTAQRLAEFFQKHPAVKRVYYPGLADHPGAETHKSQSTGAGAVLSFELESK-EAVKKLVENVSLPVFAVS 327          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: CGL_PIG (Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.236e-39
Identity = 86/230 (37.39%), Postives = 141/230 (61.30%), Query Frame = 3
Query:   12 DCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI-DGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCIS-GSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS 695
            D Y  T  +   V  + G+  + +D +  + LEAA+      L + E+PTNP L+ +D++  + + HK G I+ + D TF +   Q+ L+LGAD+ ++SATK++ GH+DV+ G +S  SE L +++R L + LG   +P   YL  RG+KTL +R+++     + +A+ LE+HP V++V YPGL SHP+H +A +Q TG  G++SF + G L     F+ +LK+  +A S
Sbjct:  112 DVYGGTNRYFRQVAAEFGLKISFVDCSKSKLLEAAITPET-KLVWIETPTNPILKMIDIEACAQIVHKHGDIILVVDNTFMSAYFQRPLALGADICMYSATKYMNGHSDVVMGLVSLNSETLHSRLRFLQNSLGAVPSPIDCYLCNRGLKTLQVRMEKHFENGMAVAQFLESHPLVEKVIYPGLPSHPQHELAKRQCTGCPGMISFYIKGSLHHAETFLKSLKLFTLAES 340          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: METB_MYCLE (Cystathionine gamma-synthase OS=Mycobacterium leprae GN=metB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.415e-39
Identity = 85/207 (41.06%), Postives = 123/207 (59.42%), Query Frame = 3
Query:   12 DCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGC-ISGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 629
            D Y  T   I+ V  +  +  T +  +D++ + AA+ +    L + E+PTNP L   D+  + +L  K    V +D TFA+P  Q+ L LGAD+VLHS TK+IGGH+DV+ G  ++  E+L      L +  G   +P  AYL +RG+KTL LR+Q+ N  A+ +A+ L  HP V  V YPGL SHP H +A +QM GFGG+VS  +
Sbjct:  109 DVYGGTFRLIDKVFTQWNVDYTPVPLSDLDAVRAAITSRT-RLIWVETPTNPLLSIADITSIGELGKKHSVKVLVDNTFASPALQQPLMLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQAFGFLQNGAGAVPSPFDAYLTMRGLKTLVLRMQRHNENAITVAEFLAGHPSVSAVLYPGLPSHPGHEVAARQMRGFGGMVSLRM 314          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: CGL_MACFA (Cystathionine gamma-lyase OS=Macaca fascicularis GN=CTH PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.415e-39
Identity = 85/230 (36.96%), Postives = 142/230 (61.74%), Query Frame = 3
Query:   12 DCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI-DGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCIS-GSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS 695
            D Y  T  +   V  + G+  + +D + ++ LEAA+      L + E+PTNP L+ +D++  + + HK+G I+ + D TF +P  Q+ L+LGAD+ + SATK++ GH+DV+ G +S   E+L  ++R L + LG   +P   YL  RG+KTLH+R+++     + +A+ LE++P V++V YPGL SHP+H +A +Q TG  G+++F + G L     F+  LK+  +A S
Sbjct:  112 DVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPET-KLVWIETPTNPVLKMIDIEACAHIVHKRGDIILVVDNTFMSPYFQRPLALGADICMCSATKYMNGHSDVVMGLVSVNCERLHNRLRFLQNSLGAVPSPLDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPGVEKVIYPGLPSHPQHELAKRQCTGCTGMITFYIKGTLQHAEIFLKNLKLFTLAES 340          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: METB_MYCTU (Cystathionine gamma-synthase OS=Mycobacterium tuberculosis GN=metB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.103e-38
Identity = 86/204 (42.16%), Postives = 122/204 (59.80%), Query Frame = 3
Query:   12 DCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGC-ISGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVS 620
            D Y  T   I+ V  +  +  T +  AD++ + AA+      L + E+PTNP L   D+  +++L   + A V +D TFA+P  Q+ L LGAD+VLHS TK+IGGH+DV+ G  ++  E+L  +   L +  G    P  AYL +RG+KTL LR+Q+ +  A  +A+ L  HP V  V YPGL SHP H IA +QM GFGG+VS
Sbjct:  109 DAYGGTFRLIDKVFTRWDVQYTPVRLADLDAVGAAITPRT-RLIWVETPTNPLLSIADITAIAELGTDRSAKVLVDNTFASPALQQPLRLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDEEFAFLQNGAGAVPGPFDAYLTMRGLKTLVLRMQRHSENACAVAEFLADHPSVSSVLYPGLPSHPGHEIAARQMRGFGGMVS 311          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: METB_MYCBO (Cystathionine gamma-synthase OS=Mycobacterium bovis GN=metB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.103e-38
Identity = 86/204 (42.16%), Postives = 122/204 (59.80%), Query Frame = 3
Query:   12 DCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGC-ISGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVS 620
            D Y  T   I+ V  +  +  T +  AD++ + AA+      L + E+PTNP L   D+  +++L   + A V +D TFA+P  Q+ L LGAD+VLHS TK+IGGH+DV+ G  ++  E+L  +   L +  G    P  AYL +RG+KTL LR+Q+ +  A  +A+ L  HP V  V YPGL SHP H IA +QM GFGG+VS
Sbjct:  109 DAYGGTFRLIDKVFTRWDVQYTPVRLADLDAVGAAITPRT-RLIWVETPTNPLLSIADITAIAELGTDRSAKVLVDNTFASPALQQPLRLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDEEFAFLQNGAGAVPGPFDAYLTMRGLKTLVLRMQRHSENACAVAEFLADHPSVSSVLYPGLPSHPGHEIAARQMRGFGGMVS 311          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: METC_ARATH (Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.970e-38
Identity = 82/229 (35.81%), Postives = 135/229 (58.95%), Query Frame = 3
Query:   12 DCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCIS-GSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS 695
            D Y  +   +  V+P+ G+    ++   ++ + AA+      L + ESPTNP  +  D++ +S++ H +GA+V +D +  +P+  + L LGAD+V+HSATKFI GH+DV+AG ++   EKL  ++  L +  G  L P   +L +RG+KT+ LR+++Q   A ++A  L +HP+VK+V+Y GL  HP HH+   Q  G G V SF + G +  +   ++  K   IA S
Sbjct:  179 DVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQT-KLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF-ITGSVALSKHLVETTKYFSIAVS 405          
BLAST of FC931572 vs. ExPASy Swiss-Prot
Match: CGL2_CAEEL (Putative cystathionine gamma-lyase 2 OS=Caenorhabditis elegans GN=cth-2 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.776e-37
Identity = 85/232 (36.64%), Postives = 138/232 (59.48%), Query Frame = 3
Query:   12 DCYRKTRIFIETV-LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA--IVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGC-ISGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS 695
            D Y  T+ +I  V +P  G+    +D  D++ LE A+  N   ++F ESP+NP L+ VD+  V     K     +V +D TF +P  Q+ +SLGAD+V+HS TK+I GH+DV+ G  I+ +++    +  +   +G   +P   +L+ RG+KTLH+R++     AL +AK LEA+ +++ V YP L SHP+H +  +Q  G  G++SF + G+L  +  F+ ALK+  +A S
Sbjct:  101 DVYGGTQRYIRRVAVPNHGLEVDSVDLTDVQNLEKAIKPNTKMVWF-ESPSNPLLKVVDIAAVVQTAKKANPEIVVVVDNTFMSPYFQRPISLGADVVVHSITKYINGHSDVVMGAVITDNDEFQQHLFFMQLAVGAVPSPFDCFLVNRGLKTLHIRMRAHYENALAVAKYLEANDRIESVLYPALPSHPQHEVHEKQTKGMSGMISFYLKGELQESRAFLSALKVFTLAES 331          
The following BLAST results are available for this feature:
BLAST of FC931572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
METZ_PSEAE1.006e-4039.61O-succinylhomoserine sulfhydrylase OS=Pseudomonas ... [more]
METC_COXBU3.822e-4036.61Cystathionine beta-lyase OS=Coxiella burnetii GN=m... [more]
METC_BACSU8.516e-4038.10Cystathionine beta-lyase metC OS=Bacillus subtilis... [more]
CGL_PIG3.236e-3937.39Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=... [more]
METB_MYCLE9.415e-3941.06Cystathionine gamma-synthase OS=Mycobacterium lepr... [more]
CGL_MACFA9.415e-3936.96Cystathionine gamma-lyase OS=Macaca fascicularis G... [more]
METB_MYCTU6.103e-3842.16Cystathionine gamma-synthase OS=Mycobacterium tube... [more]
METB_MYCBO6.103e-3842.16Cystathionine gamma-synthase OS=Mycobacterium bovi... [more]
METC_ARATH7.970e-3835.81Cystathionine beta-lyase, chloroplastic OS=Arabido... [more]
CGL2_CAEEL1.776e-3736.64Putative cystathionine gamma-lyase 2 OS=Caenorhabd... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34106F04EF PostHarvP1 Citrus clementina cDNA clone C34106F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931572 ID=FC931572; Name=FC931572; organism=Citrus clementina; type=EST; length=696bp
GTGACACCACTGATTGCTACAGGAAGACTAGGATTTTCATTGAGACTGTT
CTGCCCAAAATGGGAATCACGGCTACGGTGATTGACCCAGCTGATATGGA
AGGTTTGGAGGCAGCACTCAACAATAACAATGTCTCACTATTCTTCACCG
AGTCTCCAACCAATCCATTCCTGAGATGTGTGGATGTCAAACTGGTTTCA
GATCTTTGCCATAAGAAAGGAGCAATAGTTTGCATAGATGGAACCTTTGC
CACACCTCTCAATCAGAAGGCCCTCAGCCTTGGTGCTGATCTTGTACTGC
ACTCTGCAACAAAATTCATTGGTGGCCACAATGATGTCCTTGCTGGGTGC
ATTAGTGGTTCAGAGAAGTTAGTTACACAAATTCGTAATTTGCATCATGT
TTTGGGTGGTGCTCTCAACCCGAATGCCGCGTATTTGATCATTCGAGGCA
TGAAGACATTGCATCTTCGTGTACAGCAACAAAATTCAACTGCGTTGAGG
ATGGCCAAGATTTTAGAGGCACATCCAAAGGTGAAGCGCGTTCACTATCC
AGGCTTGAAGAGTCATCCTGAGCATCACATTGCCACACAGCAAATGACTG
GTTTTGGTGGGGTAGTTAGTTTTGAGGTTGATGGAGACCTAACGGCCACC
ATAAAATTTATTGATGCCTTGAAAATCCCATATATTGCTCCATCCT
back to top