FC931765

Overview
NameFC931765
Unique NameFC931765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931765 vs. ExPASy Swiss-Prot
Match: ODO2_HAEIN (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Haemophilus influenzae GN=sucB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 60/130 (46.15%), Postives = 84/130 (64.62%), Query Frame = 1
Query:  322 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXXXAVGTSKGLVVPVIRNAE*MNFADIEKEIYTLRKK 711
            E+RVPMTRLRKR+A RL +++N+ AMLTTFNEVDM  +M LR  Y + F ++H V+LG MS ++KA V  L+  P +NA                 AV T +GLV PV+R+ + ++ A+IEK+I  L +K
Sbjct:  180 EKRVPMTRLRKRIAERLLEAKNSTAMLTTFNEVDMQPIMTLRKTYGEKFEKQHSVRLGFMSFYIKAVVEALKRYPEVNASIDGDDVVYHNYFDISIAVSTPRGLVTPVLRDCDKLSMAEIEKQIKALAEK 309          
BLAST of FC931765 vs. ExPASy Swiss-Prot
Match: ODO2_BUCAI (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=sucB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 59/122 (48.36%), Postives = 79/122 (64.75%), Query Frame = 1
Query:  328 RVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXXXAVGTSKGLVVPVIRNAE*MNFADIEKEI 693
            RV MTRLR+R+A RL DS+N  AMLTTF+EV+M  ++ LR +Y + F +KH V++G MS FVKA +  L+N P INA                 A+ T +GL+ PVIRNA+ M  A+IEK+I
Sbjct:  193 RVKMTRLRQRIAERLLDSKNNTAMLTTFHEVNMKPIILLRKKYGEDFEKKHNVRIGFMSFFVKAVIQALKNFPEINAYIDQTDIVFYKNFDISIAISTPRGLITPVIRNADTMTMAEIEKKI 314          
BLAST of FC931765 vs. ExPASy Swiss-Prot
Match: ODO2_BACSU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bacillus subtilis GN=odhB PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 62/126 (49.21%), Postives = 78/126 (61.90%), Query Frame = 1
Query:  337 MTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXXXAVGTSKGLVVPVIRNAE*MNFADIEKEIYTLRKKA 714
            M+R R+ +A RL + Q T AMLTTFNEVDMT +M LR   KD F E++ VKLG MS F KA V+ L+  P++NA                 AV   +GLVVPV+R+A+ + FA IEKEI  L KKA
Sbjct:  192 MSRRRQTIAKRLVEVQQTSAMLTTFNEVDMTAVMNLRKRRKDQFFEQNEVKLGFMSFFTKAVVAALKKYPLLNAEIQGDELIVKKFYDIGIAVAADEGLVVPVVRDADRLTFAGIEKEIGELAKKA 317          
BLAST of FC931765 vs. ExPASy Swiss-Prot
Match: ODO2_BUCAP (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Buchnera aphidicola subsp. Schizaphis graminum GN=sucB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 57/124 (45.97%), Postives = 80/124 (64.52%), Query Frame = 1
Query:  322 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXXXAVGTSKGLVVPVIRNAE*MNFADIEKEI 693
            E R+ MTRLR+++A RL +++N  AMLTTFNEV+M  ++ LR +Y + F +KHGV++G M  FVKA V  L+  P INA                 AV T +G++ PV+RNA+ M+ ADIEK+I
Sbjct:  164 ENRIKMTRLRQKIAERLLETKNNTAMLTTFNEVNMQPIISLRKKYGEFFEKKHGVRIGFMPFFVKAVVESLKKFPEINASIDKNDIVYYKNIDVSIAVSTPRGVITPVLRNADNMSMADIEKKI 287          
BLAST of FC931765 vs. ExPASy Swiss-Prot
Match: ODO2_BUCBP (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=sucB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 56/129 (43.41%), Postives = 82/129 (63.57%), Query Frame = 1
Query:  325 RRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXXXAVGTSKGLVVPVIRNAE*MNFADIEKEIYTLRKK 711
            +RV MTRLRK+++ RL  ++N  A LTTFNEV+M +++ LR +Y + F +KHG+KLGLMS +VKA +  L+  P INA                 A+ T +GLV PV++NA+ M+ A+IE +I    +K
Sbjct:  182 KRVKMTRLRKKISERLLSTKNNTASLTTFNEVNMQSILNLRRKYGELFKQKHGIKLGLMSFYVKAVIEALKIFPEINASIDNDEIIYYNYFDISIAISTPRGLVTPVLKNADLMSMAEIEIKIKDFSEK 310          
BLAST of FC931765 vs. ExPASy Swiss-Prot
Match: ODO2_SCHPO (Probable dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC776.15c PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 63/135 (46.67%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  322 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIIN----AVXXXXXXXXXXXXXXXXAVGTSKGLVVPVIRNAE*MNFADIEKEIYTLRKKA 714
            E RV M R+R R+A RLK+SQN  A LTTFNE DM+ ++ LR +YKD  L++ GVK+G MS F KA    ++  P IN                      AV T KGLV PVIRNAE M+  +IE  I TL  KA
Sbjct:  220 EDRVKMNRMRLRIAERLKESQNRAASLTTFNECDMSAVVALRKKYKDEILKETGVKIGFMSFFSKACTQAMKQIPAINGSIEGEGKGDTLVYRDFCDLSIAVATPKGLVTPVIRNAESMSLLEIESAIATLGSKA 354          
BLAST of FC931765 vs. ExPASy Swiss-Prot
Match: ODO2_STAS1 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=odhB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 61/139 (43.88%), Postives = 79/139 (56.83%), Query Frame = 1
Query:  301 QLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKH-GVKLGLMSGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXXXAVGTSKGLVVPVIRNAE*MNFADIEKEIYTLRKKA 714
            Q  P +   R  M+R +K  A +L +  N  AMLTTFNE+DMTN+M LR   K+ F++ H G KLG MS F KAAV+ L+  P +NA                 AV T  GL+VP +R+ +  NFA+IE EI  L KKA
Sbjct:  186 QQNPSKPVIREKMSRRKKTAAKKLLEVSNNTAMLTTFNEIDMTNVMDLRKRKKEQFIKDHDGTKLGFMSFFTKAAVAALKKYPEVNAEIDGDDMITKQYYDIGVAVSTEDGLLVPFVRDCDKKNFAEIEDEIGNLAKKA 324          
BLAST of FC931765 vs. ExPASy Swiss-Prot
Match: ODO2_STAES (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 12228) GN=odhB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.458e-21
Identity = 60/136 (44.12%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  310 PKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKH-GVKLGLMSGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXXXAVGTSKGLVVPVIRNAE*MNFADIEKEIYTLRKKA 714
            P +   R  M+R +K  A +L +  N  AMLTTFNEVDMTN+M LR   K+ F++ H G KLG MS F KAAV+ L+  P +NA                 AV T  GL+VP +R+ +  NFA+IE+EI  L  KA
Sbjct:  185 PSKPVIREKMSRRKKTAAKKLLEVSNQTAMLTTFNEVDMTNVMDLRKRKKEQFIKDHDGTKLGFMSFFTKAAVAALKKYPEVNAEIDGDDMITKQFYDIGIAVSTDDGLLVPFVRDCDKKNFAEIEQEIANLAVKA 320          
BLAST of FC931765 vs. ExPASy Swiss-Prot
Match: ODO2_STAEQ (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=odhB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.458e-21
Identity = 60/136 (44.12%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  310 PKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKH-GVKLGLMSGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXXXAVGTSKGLVVPVIRNAE*MNFADIEKEIYTLRKKA 714
            P +   R  M+R +K  A +L +  N  AMLTTFNEVDMTN+M LR   K+ F++ H G KLG MS F KAAV+ L+  P +NA                 AV T  GL+VP +R+ +  NFA+IE+EI  L  KA
Sbjct:  185 PSKPVIREKMSRRKKTAAKKLLEVSNQTAMLTTFNEVDMTNVMDLRKRKKEQFIKDHDGTKLGFMSFFTKAAVAALKKYPEVNAEIDGDDMITKQFYDIGIAVSTDDGLLVPFVRDCDKKNFAEIEQEIANLAVKA 320          
BLAST of FC931765 vs. ExPASy Swiss-Prot
Match: ODO2_STAAR (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MRSA252) GN=odhB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.210e-21
Identity = 62/149 (41.61%), Postives = 82/149 (55.03%), Query Frame = 1
Query:  301 QLPPKERER----------RVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKH-GVKLGLMSGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXXXAVGTSKGLVVPVIRNAE*MNFADIEKEIYTLRKKA 714
            Q P KE ++          R  M+R +K  A +L +  N  AMLTTFNEVDMTN+M+LR   K+ F++ H G KLG MS F KA+V+ L+  P +NA                 AV T  GL+VP +R+ +  NFA+IE EI  L  KA
Sbjct:  175 QAPAKEEKKYNQYPTKPVIREKMSRRKKTAAKKLLEVSNNTAMLTTFNEVDMTNVMELRKRKKEQFMKDHDGTKLGFMSFFTKASVAALKKYPEVNAEIDGDDMITKQYYDIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKA 323          
The following BLAST results are available for this feature:
BLAST of FC931765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
ODO2_HAEIN2.148e-2546.15Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BUCAI6.910e-2448.36Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BACSU9.025e-2449.21Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BUCAP1.539e-2345.97Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BUCBP9.978e-2343.41Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_SCHPO4.952e-2246.67Probable dihydrolipoyllysine-residue succinyltrans... [more]
ODO2_STAS16.468e-2243.88Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAES2.458e-2144.12Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAEQ2.458e-2144.12Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAR3.210e-2141.61Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionC34201A01EF PostHarveN Citrus clementina cDNA clone C34201A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931765 ID=FC931765; Name=FC931765; organism=Citrus clementina; type=EST; length=717bp
CAAATTGAAACCGATAAGGTAACGATTGATGTTGCAAGTCCAGAAGCAGG
TGTTATCAAAGAGCTTGTAGCCAAAGAAGGGGAGACTGTGGAACCAGGTA
CCAAGATTGCTGTGATTTCAAAGTCTGGTGAAGGTGTAGCTCATGTAGCT
CCCTCAGAAAAAATACCAGAGAAAGCTGCTCCTAAGCCACCTTCTGCTGA
AAAAGCAAAGGAGGACAAGCCGCAGCCTAAAGTTGAAACTGTTTCTGAGA
AGCCTAAAGCACCCTCTCCACCACCTCCTAAGCGCACTGCTACTGAGCCT
CAGCTTCCCCCAAAGGAAAGGGAAAGACGAGTTCCTATGACAAGACTACG
TAAACGAGTTGCAACACGATTGAAAGACTCCCAAAATACATTTGCAATGT
TGACTACATTCAATGAAGTTGATATGACTAATTTGATGAAGCTCCGTTCT
GAGTACAAGGATGCTTTTCTTGAAAAGCATGGAGTCAAATTGGGACTTAT
GTCAGGTTTTGTGAAAGCTGCTGTTAGTGGGCTCCAGAATCAGCCTATTA
TAAATGCAGTTATTGATGGGGGTGATATCATATATAGAGATTATATTGAC
ATTAGTATCGCTGTCGGTACTTCAAAGGGCCTGGTGGTTCCAGTAATCCG
CAATGCCGAATAGATGAATTTTGCTGATATCGAAAAAGAGATTTACACCT
TGCGAAAGAAAGCGATG
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