FC931771

Overview
NameFC931771
Unique NameFC931771
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15209 contig Ccv1_Contig15209:96..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_HUMAN (60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4)

HSP 1 Score: 262.692 bits (670), Expect = 1.377e-76
Identity = 127/164 (77.44%), Postives = 137/164 (83.54%), Query Frame = 3 
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 545
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQG  ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQK
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQK 164

HSP 2 Score: 45.4394 bits (106), Expect = 1.377e-76
Identity = 19/43 (44.19%), Postives = 28/43 (65.12%), Query Frame = 2 
Query:  542 KIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVKCKLLGCHGPL 670
            KI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  164 KIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206
[Close]
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_CAEEL (60S ribosomal protein L10 OS=Caenorhabditis elegans GN=rpl-10 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 1.796e-76
Identity = 125/168 (74.40%), Postives = 138/168 (82.14%), Query Frame = 3 
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKSLSA 557
            MGRRPARCYR IKNKPYPKSRFCRGVPD KIRI+D+G K+  VD FP CVH++S E+E +SSEALEAARI  NKYM K  GKD FHLRVR HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG  ARV IG +L S+R K+ N  HA EA RRAKFKFPGRQ  +S+
Sbjct:    1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSS 168

HSP 2 Score: 50.447 bits (119), Expect = 1.796e-76
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 2 
Query:  545 IIVSRKWGFTKFSRSDYLRFKSENRIVPDGVKCKLLGCHGPL 670
            I+ SRKWGFTK+ R DY R ++E R+  DGV  +L   HGPL
Sbjct:  165 IVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPL 206
[Close]
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_PONAB (60S ribosomal protein L10 OS=Pongo abelii GN=RPL10 PE=2 SV=3)

HSP 1 Score: 262.692 bits (670), Expect = 3.056e-76
Identity = 127/164 (77.44%), Postives = 137/164 (83.54%), Query Frame = 3 
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 545
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQG  ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQK
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQK 164

HSP 2 Score: 44.2838 bits (103), Expect = 3.056e-76
Identity = 19/43 (44.19%), Postives = 27/43 (62.79%), Query Frame = 2 
Query:  542 KIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVKCKLLGCHGPL 670
            KI +S+KWGFTKF+  ++    +E R++PDG   K     GPL
Sbjct:  164 KIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYTPNRGPL 206
[Close]
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_BOMMA (60S ribosomal protein L10 OS=Bombyx mandarina GN=RpL10 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 1.153e-75
Identity = 124/164 (75.61%), Postives = 136/164 (82.93%), Query Frame = 3 
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 545
            MGRRPARCYR  KNKPYPKSRFCRGVPDPKIRI+D+G K+  VD+FP CVHLVS E E +SSEALEA RI CNKY+ K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQG  ARV IGQ ++SVR  D       EALRRAKFKFPGRQK
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 164

HSP 2 Score: 44.669 bits (104), Expect = 1.153e-75
Identity = 19/43 (44.19%), Postives = 27/43 (62.79%), Query Frame = 2 
Query:  542 KIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVKCKLLGCHGPL 670
            KI VS+KWGFTK+ R ++ + + E R+  DG   +    HGPL
Sbjct:  164 KIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 206
[Close]
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10L_BOVIN (60S ribosomal protein L10-like OS=Bos taurus GN=RPL10L PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.153e-75
Identity = 127/164 (77.44%), Postives = 137/164 (83.54%), Query Frame = 3 
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 545
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQG  ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQK
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQK 164

HSP 2 Score: 42.3578 bits (98), Expect = 1.153e-75
Identity = 18/43 (41.86%), Postives = 28/43 (65.12%), Query Frame = 2 
Query:  542 KIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVKCKLLGCHGPL 670
            KI +S+KWGFTKF+  ++    ++ R++PDG   K +   GPL
Sbjct:  164 KIHISKKWGFTKFNADEFEDKVAKKRLIPDGCGVKYVPNRGPL 206
[Close]
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10L_MOUSE (60S ribosomal protein L10-like OS=Mus musculus GN=Rpl10l PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.962e-75
Identity = 127/164 (77.44%), Postives = 137/164 (83.54%), Query Frame = 3 
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 545
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQG  ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQK
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQK 164

HSP 2 Score: 41.5874 bits (96), Expect = 1.962e-75
Identity = 18/43 (41.86%), Postives = 27/43 (62.79%), Query Frame = 2 
Query:  542 KIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVKCKLLGCHGPL 670
            KI +S+KWGFTKF+  ++    +  R++PDG   K +   GPL
Sbjct:  164 KIHISKKWGFTKFNADEFEDKVAAKRLIPDGCGVKYIPERGPL 206
[Close]
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_MACFA (60S ribosomal protein L10 OS=Macaca fascicularis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.337e-75
Identity = 126/164 (76.83%), Postives = 136/164 (82.93%), Query Frame = 3 
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 545
            MGRRPAR YR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQG  ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQK
Sbjct:    1 MGRRPARRYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQK 164

HSP 2 Score: 45.4394 bits (106), Expect = 3.337e-75
Identity = 19/43 (44.19%), Postives = 28/43 (65.12%), Query Frame = 2 
Query:  542 KIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVKCKLLGCHGPL 670
            KI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  164 KIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206
[Close]
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_DICDI (60S ribosomal protein L10 OS=Dictyostelium discoideum GN=rpl10 PE=3 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 5.676e-75
Identity = 118/164 (71.95%), Postives = 138/164 (84.15%), Query Frame = 3 
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 545
            MGRRPARCYR  KNKPY KSR+CRGVPD KIRI+D+G KK   DEFP CVHL+S EKE +SSEA+EA RI+CNKY++K  GKD+FH+RVRVHP+HVLRINKMLSCAGADRLQTGMRGAFGKP G  ARV IGQ++ S+R +D+   +  EALRR+ +KFPGRQK
Sbjct:    1 MGRRPARCYRYCKNKPYIKSRYCRGVPDAKIRIFDLGRKKASTDEFPLCVHLISLEKEQLSSEAIEAGRISCNKYISKTGGKDSFHMRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGKPMGTVARVNIGQIIFSIRTRDNMLANVVEALRRSSYKFPGRQK 164

HSP 2 Score: 48.1358 bits (113), Expect = 5.676e-75
Identity = 19/43 (44.19%), Postives = 30/43 (69.77%), Query Frame = 2 
Query:  542 KIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVKCKLLGCHGPL 670
            KI+VS+KWGFT ++R  Y + K++ R++ DG   K++  HG L
Sbjct:  164 KIVVSKKWGFTAYNREAYQKLKADGRLMNDGANVKVITNHGTL 206
[Close]
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10L_HUMAN (60S ribosomal protein L10-like OS=Homo sapiens GN=RPL10L PE=1 SV=3)

HSP 1 Score: 256.914 bits (655), Expect = 1.642e-74
Identity = 125/164 (76.22%), Postives = 136/164 (82.93%), Query Frame = 3 
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 545
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP   H+VS E E +SSEALEAARI  NKYM K  G+D FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQG  ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQK
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQK 164

HSP 2 Score: 44.2838 bits (103), Expect = 1.642e-74
Identity = 18/43 (41.86%), Postives = 28/43 (65.12%), Query Frame = 2 
Query:  542 KIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVKCKLLGCHGPL 670
            KI +S+KWGFTKF+  ++    ++  ++PDG   K +  HGPL
Sbjct:  164 KIHISKKWGFTKFNADEFEDMVAKKCLIPDGCGVKYVPSHGPL 206
[Close]
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_CHICK (60S ribosomal protein L10 (Fragment) OS=Gallus gallus GN=RPL10 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 3.979e-73
Identity = 121/158 (76.58%), Postives = 132/158 (83.54%), Query Frame = 3 
Query:   72 RCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 545
            RCYR  KNKPYPKSRFCRGVPDPKIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQG  ARV +GQV++S+R K  N  H  EALRRAKFKFPGRQK
Sbjct:    2 RCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHMGQVIMSIRTKAQNKEHVVEALRRAKFKFPGRQK 159

HSP 2 Score: 43.1282 bits (100), Expect = 3.979e-73
Identity = 18/43 (41.86%), Postives = 27/43 (62.79%), Query Frame = 2 
Query:  542 KIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVKCKLLGCHGPL 670
            KI +S+KWGFTKF+   +    ++ R++PDG   K +   GPL
Sbjct:  159 KIHISKKWGFTKFNADAFEEMVAQKRLIPDGCGVKYVPGRGPL 201
The following BLAST results are available for this feature:
BLAST of FC931771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_HUMAN1.377e-7677.4460S ribosomal protein L10 OS=Homo sapiens GN=RPL10... [more]
RL10_CAEEL1.796e-7674.4060S ribosomal protein L10 OS=Caenorhabditis elegan... [more]
RL10_PONAB3.056e-7677.4460S ribosomal protein L10 OS=Pongo abelii GN=RPL10... [more]
RL10_BOMMA1.153e-7575.6160S ribosomal protein L10 OS=Bombyx mandarina GN=R... [more]
RL10L_BOVIN1.153e-7577.4460S ribosomal protein L10-like OS=Bos taurus GN=RP... [more]
RL10L_MOUSE1.962e-7577.4460S ribosomal protein L10-like OS=Mus musculus GN=... [more]
RL10_MACFA3.337e-7576.8360S ribosomal protein L10 OS=Macaca fascicularis G... [more]
RL10_DICDI5.676e-7571.9560S ribosomal protein L10 OS=Dictyostelium discoid... [more]
RL10L_HUMAN1.642e-7476.2260S ribosomal protein L10-like OS=Homo sapiens GN=... [more]
RL10_CHICK3.979e-7376.5860S ribosomal protein L10 (Fragment) OS=Gallus gal... [more]

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Properties
Property NameValue
Genbank descriptionC34201A07EF PostHarveN Citrus clementina cDNA clone C34201A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931771 ID=FC931771; Name=FC931771; organism=Citrus clementina; type=EST; length=672bp
GACTTTTCTTGGGTTTCTGGTTTAGTTGCTGAATACCTACCAGGGCTTTC
GCCATGGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAAAAAATAAGCC
GTATCCGAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGATCAGGA
TCTATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTCTGT
GTGCACTTGGTGTCTTGGGAAAAGGAGAGCGTATCTAGTGAAGCTCTTGA
GGCTGCTCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCGGGAAAG
ATGCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCGTATC
AACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAG
GGGTGCTTTCGGTAAACCACAGGGCGCTTGTGCTAGAGTTGCCATTGGAC
AGGTCCTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCATGCTCAA
GAGGCTCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAAATCATT
GTCAGCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGATTATTTGAG
GTTCAAGTCAGAGAACCGTATTGTGCCCGATGGTGTTAAATGCAAGCTTC
TTGGATGTCATGGACCCTTGGC
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