FC931771

Overview
NameFC931771
Unique NameFC931771
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15209 contig Ccv1_Contig15209:96..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_THEAC (50S ribosomal protein L10e OS=Thermoplasma acidophilum GN=rpl10e PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27
Identity = 67/160 (41.88%), Postives = 96/160 (60.00%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M  +PAR Y +I    Y +  F  GVP PKI  +  G +KK   +FP  + LV+ E   +   ALEAAR++ N+ M + AG D F+L+V  +P HVLR +KM + AGADR+ +GMR AFG+P G  ARV    V++  R  ++++   + ALR+A  K P
Sbjct:    1 MVTKPARMYSRITGPAYTRKEFMGGVPYPKITTFVQGNQKK---DFPIEMRLVAEEPCQIRHTALEAARVSVNRRMTEAAGLDYFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYPDDVIMIARTDEAHAKELKTALRKAAIKLP 157          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_CALMQ (50S ribosomal protein L10e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27
Identity = 69/161 (42.86%), Postives = 96/161 (59.63%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKK-KGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M  RPARCY++IK +PY + ++  G P  +I  +++G  K K  + F     L   E   +   ALEAAR    KY++K      F+L++  +P HV+R NKML+ AGADRLQ GMR AFG P G   ++  G+VL+ V  +D N  HA+EAL RA+ K P
Sbjct:    1 MPLRPARCYKRIK-RPYTRLKYIHGAPYVQIPRFEMGATKAKDRERFTSVAVLRVLEGGQIRVNALEAARQMAYKYLSKVLTDQNFYLKIIKYPHHVIRENKMLAMAGADRLQEGMRLAFGVPTGRAIQIEPGEVLMIVEVEDRNITHAKEALNRARAKLP 160          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_METM7 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.242e-26
Identity = 64/160 (40.00%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M  RPARCYR  + + Y +  + R VP PK+  Y +G       EFP  V L+S     +   ALE++RIA NKY+ +  G+  +   +RV+P  +LR NKM + AGADR+  GMR +FGK  G  A+V  GQ ++++         A+EALRR   K P
Sbjct:    1 MALRPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLP 157          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_METM6 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.242e-26
Identity = 64/160 (40.00%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M  RPARCYR  + + Y +  + R VP PK+  Y +G       EFP  V L+S     +   ALE++RIA NKY+ +  G+  +   +RV+P  +LR NKM + AGADR+  GMR +FGK  G  A+V  GQ ++++         A+EALRR   K P
Sbjct:    1 MALRPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLP 157          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_METM5 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.995e-26
Identity = 65/160 (40.62%), Postives = 89/160 (55.62%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M  RPARCYR  + + Y +  + R VP PK+  Y +G       EFP  V LVS     +   ALE++RIA NKY+    G+  +   +RV+P  +LR NKM + AGADR+  GMR +FGK  G  A+V  GQ ++++         A+EALRR   K P
Sbjct:    1 MALRPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLVSKSDILIRHNALESSRIAGNKYIMGECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPERFYAAKEALRRCSMKLP 157          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_THEVO (50S ribosomal protein L10e OS=Thermoplasma volcanium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.524e-26
Identity = 65/160 (40.62%), Postives = 96/160 (60.00%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M  +PAR Y +I    Y +  F  GVP PKI  +  G +K+   +FP  + L++ E   V   ALEAAR++ N+ M + AG D F+L+V  +P HVLR +KM + AGADR+ +GMR AFG+P G  ARV    V++  R  ++++   + AL++A  K P
Sbjct:    1 MVTKPARMYTRITGPAYTRKEFMGGVPYPKITTFVQGNQKR---DFPIEMQLIAMESCQVRHTALEAARVSVNRRMTEAAGLDNFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYQNDVIMIGRTDEAHAHELKIALKKAAIKLP 157          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_METBU (50S ribosomal protein L10e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.453e-25
Identity = 61/160 (38.12%), Postives = 97/160 (60.62%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M R+PA  YR +K++ + + ++  GVP  ++  +D+G K     +FP  + L++ E+  +   ALEAARI  N+ M   AG+  FH+++RV+P  VLR NK  + AGADR+ +GMR A+GK     ARV+  Q + ++     + + A++ALRRA  K P
Sbjct:    1 MVRKPASMYRNVKSRSFTRRKYMGGVPGSQVIHFDMGNKTA---DFPVKITLLADERCQIRHTALEAARITANRAMTTAAGRSGFHMKLRVYPHEVLRENKQATGAGADRVSSGMRAAYGKNVSTAARVSARQKIFTISVNKEHFIIAKDALRRAGQKLP 157          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_UNCMA (50S ribosomal protein L10e OS=Uncultured methanogenic archaeon RC-I GN=rpl10e PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25
Identity = 65/160 (40.62%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M R+P R Y++     Y +  +  GVP  K+  +D+G      +E P  V LV  E   +  +ALEAARI+ N+Y+    GK  +  +VRV+P  VLR NK  + AGADR+  GMR AFGK  G  ARV  GQ + ++    +N   A+EA+RRA  K P
Sbjct:    1 MARKPGRMYKKFSGPAYTRREYMGGVPGVKVAQFDMGNL---TEELPIAVTLVVNETCQIRHDALEAARISANRYLLNDVGKTNYRFKVRVYPHQVLRENKQATGAGADRVSDGMRRAFGKAVGTAARVYEGQGVFTIWVNRANFEKAKEAMRRAGHKLP 157          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_THEON (50S ribosomal protein L10e OS=Thermococcus onnurineus (strain NA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.479e-25
Identity = 65/160 (40.62%), Postives = 88/160 (55.00%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            MG RPA+  R +    Y +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V   + +   A EA+RRA  K P
Sbjct:    1 MGLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFQYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEGHLKFALEAMRRAAMKLP 157          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_THESM (50S ribosomal protein L10e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.238e-25
Identity = 64/160 (40.00%), Postives = 88/160 (55.00%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M  RPA+  R +    Y +  + RG P P+I I+D+G       +F F V L + E   +   ALEAAR   N+Y++K  G+  FH ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +L+VR    +   A  A++RA  KFP
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPRITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARTQLNRYLSKNVGRSNFHYKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILTVRVNKQHLKFALAAMKRASMKFP 157          
The following BLAST results are available for this feature:
BLAST of FC931771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_THEAC7.707e-2741.8850S ribosomal protein L10e OS=Thermoplasma acidoph... [more]
RL10_CALMQ7.707e-2742.8650S ribosomal protein L10e OS=Caldivirga maquiling... [more]
RL10_METM72.242e-2640.0050S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_METM62.242e-2640.0050S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_METM54.995e-2640.6350S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_THEVO6.524e-2640.6350S ribosomal protein L10e OS=Thermoplasma volcani... [more]
RL10_METBU1.453e-2538.1350S ribosomal protein L10e OS=Methanococcoides bur... [more]
RL10_UNCMA1.898e-2540.6350S ribosomal protein L10e OS=Uncultured methanoge... [more]
RL10_THEON2.479e-2540.6350S ribosomal protein L10e OS=Thermococcus onnurin... [more]
RL10_THESM3.238e-2540.0050S ribosomal protein L10e OS=Thermococcus sibiric... [more]

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Properties
Property NameValue
Genbank descriptionC34201A07EF PostHarveN Citrus clementina cDNA clone C34201A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931771 ID=FC931771; Name=FC931771; organism=Citrus clementina; type=EST; length=672bp
GACTTTTCTTGGGTTTCTGGTTTAGTTGCTGAATACCTACCAGGGCTTTC
GCCATGGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAAAAAATAAGCC
GTATCCGAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGATCAGGA
TCTATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTCTGT
GTGCACTTGGTGTCTTGGGAAAAGGAGAGCGTATCTAGTGAAGCTCTTGA
GGCTGCTCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCGGGAAAG
ATGCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCGTATC
AACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAG
GGGTGCTTTCGGTAAACCACAGGGCGCTTGTGCTAGAGTTGCCATTGGAC
AGGTCCTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCATGCTCAA
GAGGCTCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAAATCATT
GTCAGCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGATTATTTGAG
GTTCAAGTCAGAGAACCGTATTGTGCCCGATGGTGTTAAATGCAAGCTTC
TTGGATGTCATGGACCCTTGGC
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