FC931775

Overview
NameFC931775
Unique NameFC931775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_VARPS (Adenosylhomocysteinase OS=Variovorax paradoxus (strain S110) GN=ahcY PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.847e-41
Identity = 90/159 (56.60%), Postives = 108/159 (67.92%), Query Frame = 2
Query:  176 VKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGP----GGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTD 640
            + DLS A +GR EI++AE EMPGLMA R EF  +QP KGA+ITGSLHMTIQTAVLIETL ALGA VRW SCNIFSTQDH               +GE+L++YW  T    D+GP    G GP++I+DDGGDATLL+H G +AE   +  G L  P S +
Sbjct:   17 IADLSLAAWGRKEIKIAETEMPGLMAIREEFSKAQPLKGARITGSLHMTIQTAVLIETLQALGATVRWASCNIFSTQDHAAAAIAAAGTPVFAIKGESLKDYWDYTHAIFDFGPKGSQGEGPNMILDDGGDATLLMHLGQRAE---KDLGVLSKPTSEE 172          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_BORPE (Adenosylhomocysteinase OS=Bordetella pertussis GN=ahcY PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.637e-41
Identity = 82/143 (57.34%), Postives = 100/143 (69.93%), Query Frame = 2
Query:  167 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 595
            ++ V D++ A +GR E+ +AE EMPGLMA R E+  SQP KGA+I GSLHMTIQT VLIETL ALGAEVRW SCNIFSTQDH               +GETL+EYW  T K  +W  G   ++I+DDGGDATLL+H G +AE+
Sbjct:   11 DYIVADMALAGWGRRELAIAETEMPGLMAIRDEYAASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPVFAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQ 153          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_BORPA (Adenosylhomocysteinase OS=Bordetella parapertussis GN=ahcY PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.637e-41
Identity = 82/143 (57.34%), Postives = 100/143 (69.93%), Query Frame = 2
Query:  167 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 595
            ++ V D++ A +GR E+ +AE EMPGLMA R E+  SQP KGA+I GSLHMTIQT VLIETL ALGAEVRW SCNIFSTQDH               +GETL+EYW  T K  +W  G   ++I+DDGGDATLL+H G +AE+
Sbjct:   11 DYIVADMALAGWGRRELAIAETEMPGLMAIRDEYAASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPVFAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQ 153          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_BORBR (Adenosylhomocysteinase OS=Bordetella bronchiseptica GN=ahcY PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.637e-41
Identity = 82/143 (57.34%), Postives = 100/143 (69.93%), Query Frame = 2
Query:  167 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 595
            ++ V D++ A +GR E+ +AE EMPGLMA R E+  SQP KGA+I GSLHMTIQT VLIETL ALGAEVRW SCNIFSTQDH               +GETL+EYW  T K  +W  G   ++I+DDGGDATLL+H G +AE+
Sbjct:   11 DYIVADMALAGWGRRELAIAETEMPGLMAIRDEYAASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPVFAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQ 153          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_AGRT5 (Adenosylhomocysteinase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ahcY PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.637e-41
Identity = 81/143 (56.64%), Postives = 101/143 (70.63%), Query Frame = 2
Query:  164 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 592
            +++ V D++ A FGR E+++AE EMPGLM+CR EFG S+P KGA+ITGSLHMTIQT VLIETL  LGAE+RW SCNIFSTQDH               +GE+L EYW  T+K   W  GG  ++I+DDGGDAT+ I  G +AE
Sbjct:    5 KDYIVADINLAAFGRKELDIAETEMPGLMSCRKEFGESKPLKGARITGSLHMTIQTGVLIETLKELGAEIRWASCNIFSTQDHAAAAIAAAGIPVFAVKGESLTEYWEYTDKIFQWTDGGLSNMILDDGGDATMYILLGARAE 147          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_HALHL (Adenosylhomocysteinase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.974e-41
Identity = 79/140 (56.43%), Postives = 98/140 (70.00%), Query Frame = 2
Query:  158 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHE 577
            S +++KV D+S AD+GR EI++AE EMPGLM  R EF   +P KGA+I G LHMTIQTAVLIETL  LGAEVRW SCNIFSTQD               W+GET +EYWWC E+ ++   G  P++++DDGGD T +IHE
Sbjct:    2 SNQDYKVADISLADWGRKEIKIAESEMPGLMETRREFAAQKPLKGARIAGCLHMTIQTAVLIETLQELGAEVRWSSCNIFSTQDQAAAAVAANGTPVFAWKGETEEEYWWCIEQTINGPDGWKPNMLLDDGGDLTAVIHE 141          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_GEOSL (Adenosylhomocysteinase OS=Geobacter sulfurreducens GN=ahcY PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.974e-41
Identity = 80/156 (51.28%), Postives = 109/156 (69.87%), Query Frame = 2
Query:  128 TMALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 595
            T  ++ + + +  ++ + D+S A +GR E+ +AE EMPGLMA R E+  ++P +GA+I GSLHMTIQTA+LIETL ALGAEVRW SCNIFSTQDH              ++GE+L+EYW  T +  +W  GG P++I+DDGGDATLL+H G  AE+
Sbjct:    2 TQPVARDTAGTFSDYCISDISLAAWGRKEMIIAETEMPGLMAIREEYAATRPLQGARIAGSLHMTIQTAMLIETLVALGAEVRWASCNIFSTQDHAAAAIAAAGIPVFAYKGESLEEYWEFTHRIFEWHDGGTPNMILDDGGDATLLLHLGSDAEK 157          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_GRABC (Adenosylhomocysteinase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.303e-40
Identity = 80/149 (53.69%), Postives = 103/149 (69.13%), Query Frame = 2
Query:  131 MALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHE 577
            M  S+  +A   ++KV+D+  AD+GR EI +AE EMPGLMA R E+G S+P  GA+I G LHMTIQTAVLIETLTALGA VRW SCNIFSTQDH              W+G + +E+WWC E+ +    G  P++I+DDGGD T+L+H+
Sbjct:    1 MESSMPDTAVAEDYKVRDIGLADWGRKEIRMAEDEMPGLMALREEYGNSKPLAGARIAGCLHMTIQTAVLIETLTALGATVRWSSCNIFSTQDHAAAGIAAAGIPVFAWKGLSEEEFWWCIEQTVRGPDGWTPNMILDDGGDLTVLMHD 149          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_CAEEL (Adenosylhomocysteinase OS=Caenorhabditis elegans GN=ahcy-1 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.303e-40
Identity = 82/135 (60.74%), Postives = 98/135 (72.59%), Query Frame = 2
Query:  170 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIH 574
            +KV D+  ADFGR EI LAE EMPGLMA R+++GPSQP KGA+I G LHMTIQTAVLIETLTALGAEV+W SCNIFSTQDH              W+GET +EY WC E+ + +  G   ++I+DDGGD T L+H
Sbjct:    8 YKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVLIETLTALGAEVQWSSCNIFSTQDHAAAAIAQTGVPVYAWKGETDEEYEWCIEQTIVFKDGQPLNMILDDGGDLTNLVH 142          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_XANCP (Adenosylhomocysteinase OS=Xanthomonas campestris pv. campestris GN=ahcY PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.701e-40
Identity = 83/155 (53.55%), Postives = 106/155 (68.39%), Query Frame = 2
Query:  140 SVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDW----GPGGGPDLIVDDGGDATLLIHEGVKAE 592
            +V K+    ++K+ D+S AD+GR E+++AE EMPGLM+ R +   ++P K  +ITGSLHMTIQTAVLIETL  +GA VRW SCNIFSTQDH              W+GETL+EYW CT  AL +    G   GP+L+VDDGGD TLLIH+G + E
Sbjct:    3 AVAKTVPHTDYKIADISLADWGRKELDIAEHEMPGLMSIRRKHAQTKPLKDVRITGSLHMTIQTAVLIETLKDIGANVRWASCNIFSTQDHAAAAIAATGTPVFAWKGETLEEYWDCTLDALTFTLPDGTLTGPELVVDDGGDVTLLIHKGYELE 157          
The following BLAST results are available for this feature:
BLAST of FC931775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
SAHH_VARPS5.847e-4156.60Adenosylhomocysteinase OS=Variovorax paradoxus (st... [more]
SAHH_BORPE7.637e-4157.34Adenosylhomocysteinase OS=Bordetella pertussis GN=... [more]
SAHH_BORPA7.637e-4157.34Adenosylhomocysteinase OS=Bordetella parapertussis... [more]
SAHH_BORBR7.637e-4157.34Adenosylhomocysteinase OS=Bordetella bronchiseptic... [more]
SAHH_AGRT57.637e-4156.64Adenosylhomocysteinase OS=Agrobacterium tumefacien... [more]
SAHH_HALHL9.974e-4156.43Adenosylhomocysteinase OS=Halorhodospira halophila... [more]
SAHH_GEOSL9.974e-4151.28Adenosylhomocysteinase OS=Geobacter sulfurreducens... [more]
SAHH_GRABC1.303e-4053.69Adenosylhomocysteinase OS=Granulibacter bethesdens... [more]
SAHH_CAEEL1.303e-4060.74Adenosylhomocysteinase OS=Caenorhabditis elegans G... [more]
SAHH_XANCP1.701e-4053.55Adenosylhomocysteinase OS=Xanthomonas campestris p... [more]

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Properties
Property NameValue
Genbank descriptionC34201A11EF PostHarveN Citrus clementina cDNA clone C34201A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931775 ID=FC931775; Name=FC931775; organism=Citrus clementina; type=EST; length=693bp
GTCGCTCACACCCACTCTCTCTCTCTCTCGCTTGTACAATCATTCACTTT
GTTTGGTTAGTTTCCAAAGAGAGAGTAGATTGCCCTCTCTTCCTTCTTTC
TTGTAGATCTATCAATTCTATTAATCAACCATGGCTTTGTCCGTCGAGAA
ATCCGCTAGCGGTCGTGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACT
TCGGCCGCCTCGAAATCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATG
GCTTGCCGCGCCGAGTTCGGCCCTTCACAGCCTTTCAAAGGAGCCAAGAT
CACCGGTTCACTCCACATGACCATCCAGACGGCCGTCCTCATCGAGACGC
TCACCGCTCTCGGCGCCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCA
ACCCAAGACCACGCGGCCGCCGCCATCGCACGTGACTCCGCCTCCGTCTT
TGCCTGGGAGGGTGAGACCCTCCAGGAGTACTGGTGGTGCACGGAGAAAG
CCCTGGACTGGGGTCCCGGCGGCGGCCCAGATCTCATCGTCGATGACGGT
GGTGACGCCACGTTGTTGATCCACGAGGGAGTCAAAGCTGAGGAGATCTA
CGAGAAGACCGGGAAGTTGCCCGACCCGGCCTCCACCGACAACGCCGAGT
TTCAGATTGTTTTGACTATCATTAGAGATGGGTTGAAGGCCGA
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