FC931782

Overview
NameFC931782
Unique NameFC931782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5307 contig Ccv1_Contig5307:158..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: WDR69_XENTR (WD repeat-containing protein 69 OS=Xenopus tropicalis GN=wdr69 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 57/199 (28.64%), Postives = 92/199 (46.23%), Query Frame = 2
Query:   98 ATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            A   +  L+ TGS+D T KLW     +   T +GH   ++S++ + +G    + S D  V V+++ +   I TL     E+   QF+   + +A A     S KLWD+     +ATL+    E             VL V +   G+ +A  S DGT  V+  +  K L  LEGH   +  + ++    R+L ++SD T
Sbjct:  184 AFNPQSTLIATGSMDTTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATA-SMDKSCKLWDSLNGKCVATLTGHEDE-------------VLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRILTASSDKT 368          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: WDR69_RAT (WD repeat-containing protein 69 OS=Rattus norvegicus GN=Wdr69 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 56/220 (25.45%), Postives = 98/220 (44.55%), Query Frame = 2
Query:  122 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATL----------------SIPRPEGLKPT----DKSSSK---------KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            + TGS D+T KLW  +  +   T  GH   +V ++ +P   + A+ S+D+  +++D+ +   + TL    +E+  + FD  G  + + G    +V +WD +T   + TL                S+     +  T    D +S K           +L   +   G+ IA  S DGT  V++ T  K +  LEGH   +  + ++P   R+L  +SD T
Sbjct:  150 IATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLSFNPQSTVVATGSMDTTAKLWDIQSGEEVVTLTGHLAEIISLSFDTSGDRI-ITGSFDHTVVVWDASTGRKVHTLIGHCAEISSALFSWDCSLILTGSMDKTCMLWDATSGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARVYNATTRKCITKLEGHEGEISKISFNPQGNRLLTGSSDKT 368          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: TUP11_SCHPO (Transcriptional repressor tup11 OS=Schizosaccharomyces pombe GN=tup11 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 62/233 (26.61%), Postives = 108/233 (46.35%), Query Frame = 2
Query:   41 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL-------GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 718
            ++ V + HE+ ++++ +          +++GS D T +LW  +        TG C+       GV ++A  P+    A  SLD  +RV+ V +   +  LE     V+ + F P  + L ++G    ++K+W+      +  LS  +PEG+     +    FVLSVA SPD R    GS D ++  +D+   +     +GH   V S+ +SP D R   S S D    ++  +
Sbjct:  394 VRYVFSGHEQDIYSLDF----SHNGRFIVSGSGDRTARLWDVE--------TGQCILKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWSV-SGTLVERLEGHKESVYSIAFSPDSSIL-LSGSLDKTIKVWELQATRSVG-LSAIKPEGICKATYTGHTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQTGQSYLTCQGHKNSVISVCFSP-DGRQFASGSGDLRARIWSID 610          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: WDR69_BOVIN (WD repeat-containing protein 69 OS=Bos taurus GN=WDR69 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 57/200 (28.50%), Postives = 92/200 (46.00%), Query Frame = 2
Query:  119 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 718
            L+ TGS+D T KLW     +   T TGH   ++S++ + SG    + S D  V V++ DT   + TL    +E+    F+    +L + G    + KLWD      +ATL+    E             +L   +   G+ IA  S DGT  +F     + +  LEGH   +  + ++P   R+L  +SD T   ++DA+
Sbjct:  191 LVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFN-WDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDE-------------ILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKT-ARIWDAQ 375          

HSP 2 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 53/198 (26.77%), Postives = 94/198 (47.47%), Query Frame = 2
Query:  125 LTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVA-AHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 715
            +TGS D T KLW     +   T  GH   V ++A  +P G   A+ S D   +++ V+T     T     +E+  + F+P+ +TL   G    + KLWD  +   + TL+    E             ++S++++  G RI  GS D T++V++    + ++ L GH   + S V++  D  ++ + S D    ++DA
Sbjct:  108 ITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQ-STLVATGSMDTTAKLWDIQSGEEVFTLTGHSAE-------------IISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFN-WDCSLILTGSMDKTCKLWDA 290          

HSP 3 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 45/191 (23.56%), Postives = 81/191 (42.41%), Query Frame = 2
Query:  122 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            ++TGS D TV +W  D  +   T  GHC  + S   +    +  + S+D   +++D      +ATL     E+    FD  G  +A A     + +++  AT   +  L     E             +  ++++P G R+  GS D T  ++D    + L  LEGH   + S  ++     ++  + D+T
Sbjct:  234 IITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYTGKLIATA-SADGTARIFSAATRECVTKLEGHEGE-------------ISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGSKDNT 410          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 56/191 (29.32%), Postives = 94/191 (49.21%), Query Frame = 2
Query:  122 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            ++ GSL  +++LW  +  ++ RT  GH   + S+  HP G   AS S+DS ++++DV     +   +     V  + F P G  LA A   S +VKLWD     +I             T+ +S    V  V + P+   +A GS D T+ ++D+ +   +   EG    VRS++++P D   L+S S++T
Sbjct:   78 VVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDS-TVKLWDLIAGKMI-------------TEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNP-DGSCLYSGSENT 253          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: WDR69_XENLA (WD repeat-containing protein 69 OS=Xenopus laevis GN=wdr69 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 55/192 (28.65%), Postives = 90/192 (46.88%), Query Frame = 2
Query:  119 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            L+ TGS+D T KLW     +   T +GH   ++S++ + +G    + S D  V V+++ +   I TL     E+   QF+   + +A A     S KLWD+     +ATL+    E             VL V +   G+ +A  S DGT  V+  +  K L  LEGH   +  + ++    R++ ++SD T
Sbjct:  191 LIATGSMDTTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATA-SMDKSCKLWDSLNGKCVATLTGHDDE-------------VLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRIVTASSDKT 368          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 59/219 (26.94%), Postives = 102/219 (46.58%), Query Frame = 2
Query:   41 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLV-YSPVDPRVLFSASDDT 694
            LK     H +S+ +V + P  +     L + S D+T+K+W   D + ERT  GH  G+  +A      +  SAS D  ++++DV++   + TL+     V+ + F+P+ + L V+G    +V++WD  T      +             S+    V  V ++ DG  +  GS DGT+ ++D T  + L+ +        S V +SP    VL    D+T
Sbjct:   38 LKYTLKGHLKSISSVKFSPDGKW----LASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQ-SNLIVSGSFDENVRIWDVNTGECTKMI-------------SAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFVLAGTLDNT 238          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: REC14_SCHPO (Meiotic recombination protein rec14 OS=Schizosaccharomyces pombe GN=rec14 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 60/225 (26.67%), Postives = 94/225 (41.78%), Query Frame = 2
Query:   53 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQ---LERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNA--SIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            ENAH+  ++++  V         L + S D  +K W   D +   +E  +T H LGV  +A      +  S      V V++ +TN    +      PSE W     P G T+A        + +WD              P   K ++  +  KF L + +SP+GR I  G   G + +      +  H L GH  PVRS+ +SP    +L +A D   + +YD
Sbjct:   12 ENAHQADIYSLNVVAGN------LWSASGDSKIKKWSIGDAEHSLVEEIDTPHKLGVHHLATSLDENVVVSCGFGQDVYVWNPETNEFRDLGNNAQHPSECWSSCISPDGQTIAFTSV-DGRIAVWDN-------------PSDCKISELDTKGKFGLCIDYSPNGRFIVSGHQTGQLFLISTETGRLFHVLSGHTSPVRSVAFSP-GSTLLAAAGDSKMITIYD 215          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: YZLL_CAEEL (Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 61/216 (28.24%), Postives = 104/216 (48.15%), Query Frame = 2
Query:   50 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 694
            + NAH++S+  + + P        + +GS D ++K+WR D +  E+T  GH LG+   +      +  S S D  V+VFDV +   + TL+   + V+   F+P GT +A +G    ++++W     N I   SIP  E             V SV ++ DG  +A GS DG + ++D T    +  L +    P+  + +SP    +L S  ++T
Sbjct:  102 IPNAHKKSISGIKFSPDGR----YMGSGSADCSIKIWRMDFVY-EKTLMGHRLGINEFSWSSDSKLIVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGTLIA-SGSFDETIRIWCARNGNTI--FSIPGHEDP-----------VSSVCFNRDGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSPNGKYILASNLNNT 298          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 63/219 (28.77%), Postives = 103/219 (47.03%), Query Frame = 2
Query:   41 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 694
            LK     H ++V AV + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  S S D  ++V+++ T  S+ TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++D    + L  L +    PV  + +SP    +L +  D+T
Sbjct:   64 LKFTLAGHTKAVSAVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 264          
The following BLAST results are available for this feature:
BLAST of FC931782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
WDR69_XENTR6.051e-1528.64WD repeat-containing protein 69 OS=Xenopus tropica... [more]
WDR69_RAT7.903e-1525.45WD repeat-containing protein 69 OS=Rattus norvegic... [more]
TUP11_SCHPO1.348e-1426.61Transcriptional repressor tup11 OS=Schizosaccharom... [more]
WDR69_BOVIN1.761e-1428.50WD repeat-containing protein 69 OS=Bos taurus GN=W... [more]
KTNB1_DANRE1.761e-1429.32Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
WDR69_XENLA3.003e-1428.65WD repeat-containing protein 69 OS=Xenopus laevis ... [more]
WDR5_DICDI3.003e-1426.94WD repeat-containing protein 5 homolog OS=Dictyost... [more]
REC14_SCHPO3.003e-1426.67Meiotic recombination protein rec14 OS=Schizosacch... [more]
YZLL_CAEEL5.122e-1428.24Uncharacterized WD repeat-containing protein K04G1... [more]
WDS_DROME5.122e-1428.77Protein will die slowly OS=Drosophila melanogaster... [more]

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Properties
Property NameValue
Genbank descriptionC34201B06EF PostHarveN Citrus clementina cDNA clone C34201B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931782 ID=FC931782; Name=FC931782; organism=Citrus clementina; type=EST; length=731bp
GGTAGGGTTGTGTCCACCAAGCCAAATGAAATTTGCTGGTCTAAAATCAG
TCGAGAACGCGCACGAGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCG
ACCGAGACTCGACCGGCGCTCTTGCTGACGGGATCGTTGGACGAGACCGT
GAAGCTGTGGCGGCCCGACGACATGCAGCTGGAGCGGACCAACACTGGCC
ACTGTTTGGGCGTAGTCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCT
GCCTCTGCTTCTCTCGACAGCTTTGTTCGAGTATTTGATGTCGACACCAA
CGCCTCTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGC
AGTTCGATCCTAAGGGTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCA
TCTGTAAAGCTCTGGGACACAGCCACTTGGAATCTGATTGCCACCCTGTC
AATTCCTCGTCCAGAAGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGA
AGTTTGTTCTATCAGTTGCATGGAGTCCTGATGGCAGACGAATTGCTTGT
GGTTCAATGGATGGCACAATTTCTGTTTTTGATGTTACCCGTGCCAAATT
CCTGCATCATCTGGAAGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATT
CCCCTGTTGATCCACGTGTTCTCTTCTCTGCATCAGATGATACTCATGTG
CACATGTATGATGCTGAAGGNTAAAGTCTGG
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