FC931782

Overview
NameFC931782
Unique NameFC931782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5307 contig Ccv1_Contig5307:158..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 63/219 (28.77%), Postives = 100/219 (45.66%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIAT-LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFM-PVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            H  +V++ ++ P  +     LL+GS D+TV+LW  D      +  GH   V  V+  P G   A+AS D   R++  D    +       ++V  + F P G  +   G    + ++WD +T + +   L    P              V+S+A  PDGR ++ GS DG I+V+D+   K L  + GH    + SL YS  +  VL S   D  V ++D
Sbjct:  524 HSGTVYSTSFSPDNK----YLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYV-FTGSSDKTCRMWDVSTGDSVRLFLGHTAP--------------VISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSK-EGNVLISGGADHTVRVWD 722          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 53/200 (26.50%), Postives = 97/200 (48.50%), Query Frame = 2
Query:  113 PALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 706
            P L+ TGS D TVKLW        +T   +   V++V  + +     S  +D+ ++V+D+  N    T+      V  +    +G+ L ++     +V++WD   +        P+   ++    +  + +K +L  +WSPDG +IA GS D  + V+D T  + L+ L GH   +  + + P +P ++ SAS D  ++M
Sbjct:  165 PQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVRIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEP-IILSASSDKRLYM 354          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP4_BOVIN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 59/243 (24.28%), Postives = 99/243 (40.74%), Query Frame = 2
Query:    5 GLCPPSQMKFAGLKSVENAHEESVWAVTWVPAT----ETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG 721
            GLC    +    L      H  +V A+ + P +    + +   L + + D +VKLW  D  +      GH + V  V  HPSG    +   D   R++D++    I   E     V+ + F   G +LA  GG  A  ++WD  T   I  L                 K +  + +SP+G  IA GS D T  V+D+ + + ++ +  H   V  + + P+    L + + D    ++   G
Sbjct:  252 GLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDG-SLAGTGGLDAFGRVWDLRTGRCIMFL-------------EGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPG 480          

HSP 2 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 62/220 (28.18%), Postives = 93/220 (42.27%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 718
            H   V  VTW P+       L T   D + +LW  +  +      GH +GV  +A H  G +A +  LD+F RV+D+ T   I  LE    E++ + F P G  +A  G G  + K+WD      + T  IP  + L           V  V + P  G  +  G+ D T  ++       L  L GH   V  L  S  D +++ + S D    ++ AE
Sbjct:  321 HTVRVARVTWHPSGR----FLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIA-TGSGDNTCKVWDLRQRRCVYT--IPAHQNL-----------VTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISS-DGQLIATCSYDRTFKLWMAE 521          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP4_PONAB (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 59/243 (24.28%), Postives = 99/243 (40.74%), Query Frame = 2
Query:    5 GLCPPSQMKFAGLKSVENAHEESVWAVTWVPAT----ETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG 721
            GLC    +    L      H  +V A+ + P +    + +   L + + D +VKLW  D  +      GH + V  V  HPSG    +   D   R++D++    I   E     V+ + F   G +LA  GG  A  ++WD  T   I  L                 K +  + +SP+G  IA GS D T  V+D+ + + ++ +  H   V  + + P+    L + + D    ++   G
Sbjct:  252 GLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDG-SLAGTGGLDAFGRVWDLRTGRCIMFL-------------EGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPG 480          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP4_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 59/243 (24.28%), Postives = 99/243 (40.74%), Query Frame = 2
Query:    5 GLCPPSQMKFAGLKSVENAHEESVWAVTWVPAT----ETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG 721
            GLC    +    L      H  +V A+ + P +    + +   L + + D +VKLW  D  +      GH + V  V  HPSG    +   D   R++D++    I   E     V+ + F   G +LA  GG  A  ++WD  T   I  L                 K +  + +SP+G  IA GS D T  V+D+ + + ++ +  H   V  + + P+    L + + D    ++   G
Sbjct:  253 GLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDG-SLAGTGGLDAFGRVWDLRTGRCIMFL-------------EGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPG 481          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 60/212 (28.30%), Postives = 94/212 (44.34%), Query Frame = 2
Query:   56 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASD 688
            + H ++V AV + P      +LL +GS D TV LW         T  GH  GV  VA +P+G   A+A+ D  ++++D +T A + TL    + V+   FD     L  +G    +++LWD  +   +  +    P    P         V S A+S DG  +   S+DG I ++D      L  L +    PV    ++P    VL +  D
Sbjct:   37 SGHTKAVAAVKFSPDG----SLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWDAETGACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRSGRCLREV----PAHSDP---------VTSAAFSYDGSMVVTSSLDGLIRLWDTQTGHCLKTLFDRDSPPVSFAAFTPNAKYVLCNTLD 231          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: TAF5_DROME (Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 56/198 (28.28%), Postives = 89/198 (44.95%), Query Frame = 2
Query:  119 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            LLL+ S D T++LW         T  GH   V  V   P G    S S D   R++  D+N ++       S+V  +QF P    +A  G    +V+LWD  T   +  +             +  K  V S+A+S  GR +A GS+D  I ++D++    +  L  H   V ++ +S  D  VL +A  D ++ ++D
Sbjct:  464 LLLSCSEDSTIRLWSLLTWSCVVTYRGHVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNYVA-TGSSDRTVRLWDNMTGQSVRLM-------------TGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNGSLVTTLLRHTSTVTTITFSR-DGTVLAAAGLDNNLTLWD 646          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: SEL10_CAEBR (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 61/222 (27.48%), Postives = 94/222 (42.34%), Query Frame = 2
Query:   47 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            ++   HEE V     +   +    LL+TGS D T+K+W  DD +++ T  GH  GV +      G    S S D  V+V+  +    + TL+   S V  M       T  V G    ++++WD  T             GL        +  V  V +  DG  +  G  D T+ ++D    K L  L GH   V SL+Y   +  ++ S S DT + ++D
Sbjct:  251 AILRGHEEHV-----ITCMQIHNDLLVTGSDDNTLKVWSIDDGEVKHTLNGHSGGVWTSQISQCGRYIVSGSTDRTVKVWRAEDGFLLHTLQGHTSTVRCMAM---ANTTLVTGSRDCTLRVWDIET-------------GLHVRTLQGHQAAVRCVQF--DGNIVVSGGYDFTVKIWDAFSGKCLRTLIGHSNRVYSLLYES-ERSIVCSGSLDTSIRVWD 448          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP4_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus musculus GN=Prpf4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 59/243 (24.28%), Postives = 99/243 (40.74%), Query Frame = 2
Query:    5 GLCPPSQMKFAGLKSVENAHEESVWAVTWVPAT----ETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG 721
            GLC    +    L      H  +V A+ + P +    + +   L + + D +VKLW  D  +      GH + V  V  HPSG    +   D   R++D++    I   E     V+ + F   G +LA  GG  A  ++WD  T   I  L                 K +  + +SP+G  IA GS D T  V+D+ + + ++ +  H   V  + + P+    L + + D    ++   G
Sbjct:  252 GLCKLWSVPDCSLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDG-SLAGTGGLDAFGRVWDLRTGRCIMFL-------------EGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIWTHPG 480          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP19_CAEEL (Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 56/208 (26.92%), Postives = 97/208 (46.63%), Query Frame = 2
Query:   92 VPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL-KPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            + A + +  L LTG +D+TV L+  +  Q+ +T  GH   + +V  HP  I A SAS DS +RV+    ++S A ++   + V         T +++   G   +   D + W   A   I   + L K + +  S+  V S+ + PDG     G+ D  + ++D+          GH   VRS+ +S  +   L + S+D  V ++D
Sbjct:  214 ITALDIKGNLSLTGGIDKTVVLYDYEKEQVMQTFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSSSKAIIDVHQAPV---------TDISLNASGDYILSASDDSYW---AFSDIRSGKSLCKVSVEPGSQIAVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSE-NGYYLATGSEDGEVKLWD 408          
The following BLAST results are available for this feature:
BLAST of FC931782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
TAF5_YEAST2.152e-1228.77Transcription initiation factor TFIID subunit 5 OS... [more]
SNR40_BOVIN2.152e-1226.50U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
PRP4_BOVIN2.152e-1224.28U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos ... [more]
PRP4_PONAB2.811e-1224.28U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pong... [more]
PRP4_HUMAN2.811e-1224.28U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo... [more]
MUT11_CHLRE3.671e-1228.30Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut1... [more]
TAF5_DROME4.794e-1228.28Transcription initiation factor TFIID subunit 5 OS... [more]
SEL10_CAEBR4.794e-1227.48F-box/WD repeat-containing protein sel-10 OS=Caeno... [more]
PRP4_MOUSE4.794e-1224.28U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus ... [more]
PRP19_CAEEL6.262e-1226.92Pre-mRNA-processing factor 19 homolog OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionC34201B06EF PostHarveN Citrus clementina cDNA clone C34201B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931782 ID=FC931782; Name=FC931782; organism=Citrus clementina; type=EST; length=731bp
GGTAGGGTTGTGTCCACCAAGCCAAATGAAATTTGCTGGTCTAAAATCAG
TCGAGAACGCGCACGAGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCG
ACCGAGACTCGACCGGCGCTCTTGCTGACGGGATCGTTGGACGAGACCGT
GAAGCTGTGGCGGCCCGACGACATGCAGCTGGAGCGGACCAACACTGGCC
ACTGTTTGGGCGTAGTCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCT
GCCTCTGCTTCTCTCGACAGCTTTGTTCGAGTATTTGATGTCGACACCAA
CGCCTCTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGC
AGTTCGATCCTAAGGGTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCA
TCTGTAAAGCTCTGGGACACAGCCACTTGGAATCTGATTGCCACCCTGTC
AATTCCTCGTCCAGAAGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGA
AGTTTGTTCTATCAGTTGCATGGAGTCCTGATGGCAGACGAATTGCTTGT
GGTTCAATGGATGGCACAATTTCTGTTTTTGATGTTACCCGTGCCAAATT
CCTGCATCATCTGGAAGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATT
CCCCTGTTGATCCACGTGTTCTCTTCTCTGCATCAGATGATACTCATGTG
CACATGTATGATGCTGAAGGNTAAAGTCTGG
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