FC931782
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12 Identity = 63/219 (28.77%), Postives = 100/219 (45.66%), Query Frame = 2 Query: 62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIAT-LSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFM-PVRSLVYSPVDPRVLFSASDDTHVHMYD 712 H +V++ ++ P + LL+GS D+TV+LW D + GH V V+ P G A+AS D R++ D + ++V + F P G + G + ++WD +T + + L P V+S+A PDGR ++ GS DG I+V+D+ K L + GH + SL YS + VL S D V ++D Sbjct: 524 HSGTVYSTSFSPDNK----YLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYV-FTGSSDKTCRMWDVSTGDSVRLFLGHTAP--------------VISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSK-EGNVLISGGADHTVRVWD 722
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12 Identity = 53/200 (26.50%), Postives = 97/200 (48.50%), Query Frame = 2 Query: 113 PALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLK--PTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHM 706 P L+ TGS D TVKLW +T + V++V + + S +D+ ++V+D+ N T+ V + +G+ L ++ +V++WD + P+ ++ + + +K +L +WSPDG +IA GS D + V+D T + L+ L GH + + + P +P ++ SAS D ++M Sbjct: 165 PQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYL-LSNAMDNTVRVWDVRPF-------APKERCVRIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEP-IILSASSDKRLYM 354
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP4_BOVIN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12 Identity = 59/243 (24.28%), Postives = 99/243 (40.74%), Query Frame = 2 Query: 5 GLCPPSQMKFAGLKSVENAHEESVWAVTWVPAT----ETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG 721 GLC + L H +V A+ + P + + + L + + D +VKLW D + GH + V V HPSG + D R++D++ I E V+ + F G +LA GG A ++WD T I L K + + +SP+G IA GS D T V+D+ + + ++ + H V + + P+ L + + D ++ G Sbjct: 252 GLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDG-SLAGTGGLDAFGRVWDLRTGRCIMFL-------------EGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPG 480 HSP 2 Score: 68.9366 bits (167), Expect = 3.108e-11 Identity = 62/220 (28.18%), Postives = 93/220 (42.27%), Query Frame = 2 Query: 62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSP-DGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 718 H V VTW P+ L T D + +LW + + GH +GV +A H G +A + LD+F RV+D+ T I LE E++ + F P G +A G G + K+WD + T IP + L V V + P G + G+ D T ++ L L GH V L S D +++ + S D ++ AE Sbjct: 321 HTVRVARVTWHPSGR----FLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIA-TGSGDNTCKVWDLRQRRCVYT--IPAHQNL-----------VTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISS-DGQLIATCSYDRTFKLWMAE 521
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP4_PONAB (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12 Identity = 59/243 (24.28%), Postives = 99/243 (40.74%), Query Frame = 2 Query: 5 GLCPPSQMKFAGLKSVENAHEESVWAVTWVPAT----ETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG 721 GLC + L H +V A+ + P + + + L + + D +VKLW D + GH + V V HPSG + D R++D++ I E V+ + F G +LA GG A ++WD T I L K + + +SP+G IA GS D T V+D+ + + ++ + H V + + P+ L + + D ++ G Sbjct: 252 GLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDG-SLAGTGGLDAFGRVWDLRTGRCIMFL-------------EGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPG 480
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP4_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12 Identity = 59/243 (24.28%), Postives = 99/243 (40.74%), Query Frame = 2 Query: 5 GLCPPSQMKFAGLKSVENAHEESVWAVTWVPAT----ETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG 721 GLC + L H +V A+ + P + + + L + + D +VKLW D + GH + V V HPSG + D R++D++ I E V+ + F G +LA GG A ++WD T I L K + + +SP+G IA GS D T V+D+ + + ++ + H V + + P+ L + + D ++ G Sbjct: 253 GLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDG-SLAGTGGLDAFGRVWDLRTGRCIMFL-------------EGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPG 481
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12 Identity = 60/212 (28.30%), Postives = 94/212 (44.34%), Query Frame = 2 Query: 56 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASD 688 + H ++V AV + P +LL +GS D TV LW T GH GV VA +P+G A+A+ D ++++D +T A + TL + V+ FD L +G +++LWD + + + P P V S A+S DG + S+DG I ++D L L + PV ++P VL + D Sbjct: 37 SGHTKAVAAVKFSPDG----SLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWDAETGACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRSGRCLREV----PAHSDP---------VTSAAFSYDGSMVVTSSLDGLIRLWDTQTGHCLKTLFDRDSPPVSFAAFTPNAKYVLCNTLD 231
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: TAF5_DROME (Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12 Identity = 56/198 (28.28%), Postives = 89/198 (44.95%), Query Frame = 2 Query: 119 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712 LLL+ S D T++LW T GH V V P G S S D R++ D+N ++ S+V +QF P +A G +V+LWD T + + + K V S+A+S GR +A GS+D I ++D++ + L H V ++ +S D VL +A D ++ ++D Sbjct: 464 LLLSCSEDSTIRLWSLLTWSCVVTYRGHVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNYVA-TGSSDRTVRLWDNMTGQSVRLM-------------TGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNGSLVTTLLRHTSTVTTITFSR-DGTVLAAAGLDNNLTLWD 646
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: SEL10_CAEBR (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12 Identity = 61/222 (27.48%), Postives = 94/222 (42.34%), Query Frame = 2 Query: 47 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712 ++ HEE V + + LL+TGS D T+K+W DD +++ T GH GV + G S S D V+V+ + + TL+ S V M T V G ++++WD T GL + V V + DG + G D T+ ++D K L L GH V SL+Y + ++ S S DT + ++D Sbjct: 251 AILRGHEEHV-----ITCMQIHNDLLVTGSDDNTLKVWSIDDGEVKHTLNGHSGGVWTSQISQCGRYIVSGSTDRTVKVWRAEDGFLLHTLQGHTSTVRCMAM---ANTTLVTGSRDCTLRVWDIET-------------GLHVRTLQGHQAAVRCVQF--DGNIVVSGGYDFTVKIWDAFSGKCLRTLIGHSNRVYSLLYES-ERSIVCSGSLDTSIRVWD 448
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP4_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus musculus GN=Prpf4 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12 Identity = 59/243 (24.28%), Postives = 99/243 (40.74%), Query Frame = 2 Query: 5 GLCPPSQMKFAGLKSVENAHEESVWAVTWVPAT----ETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG 721 GLC + L H +V A+ + P + + + L + + D +VKLW D + GH + V V HPSG + D R++D++ I E V+ + F G +LA GG A ++WD T I L K + + +SP+G IA GS D T V+D+ + + ++ + H V + + P+ L + + D ++ G Sbjct: 252 GLCKLWSVPDCSLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDG-SLAGTGGLDAFGRVWDLRTGRCIMFL-------------EGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIWTHPG 480
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP19_CAEEL (Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12 Identity = 56/208 (26.92%), Postives = 97/208 (46.63%), Query Frame = 2 Query: 92 VPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL-KPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712 + A + + L LTG +D+TV L+ + Q+ +T GH + +V HP I A SAS DS +RV+ ++S A ++ + V T +++ G + D + W A I + L K + + S+ V S+ + PDG G+ D + ++D+ GH VRS+ +S + L + S+D V ++D Sbjct: 214 ITALDIKGNLSLTGGIDKTVVLYDYEKEQVMQTFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSSSKAIIDVHQAPV---------TDISLNASGDYILSASDDSYW---AFSDIRSGKSLCKVSVEPGSQIAVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSE-NGYYLATGSEDGEVKLWD 408 The following BLAST results are available for this feature:
BLAST of FC931782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931782 ID=FC931782; Name=FC931782; organism=Citrus clementina; type=EST; length=731bpback to top |