FC931782
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11 Identity = 52/203 (25.62%), Postives = 90/203 (44.33%), Query Frame = 2 Query: 44 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS 652 K + H + +V + P+ +L+++ S D T+K+W + + ERT GH V + +G + AS S D ++++D T + TL V ++F P G L ++ ++K+W+ AT I TL + +V + S DG IA S D TI +++ + + L H V L +S Sbjct: 99 KHILTGHRNCINSVKFHPSF----SLMVSASEDATIKVWDFESGEFERTLKGHTNAVQDIDFDKTGNLLASCSADLTIKLWDFQTYDCVKTLHGHDHNVSCVRFTPSGDQL-ISSSRDKTIKVWEAATGYCIKTL-------------VGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECLATYREHSHVVECLAFS 283
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11 Identity = 52/200 (26.00%), Postives = 90/200 (45.00%), Query Frame = 2 Query: 119 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 718 LL TG D V +W + + TGH + S+ + + S +RV+D++ + TL + + + F P G+ +A +G +KLWD R +G KS ++ V + +SPDG+ +A + D T+ ++D+T K + GH PV + + P + +L S S D + +D E Sbjct: 35 LLATGGDDCRVNVWSVNKPNCVMSLTGHTTPIESLQISAKEELIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVA-SGSLDTDIKLWDV------------RRKGCIFKYKSHTQA-VRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPSE-YLLASGSSDRTIRFWDLE 219 HSP 2 Score: 67.3958 bits (163), Expect = 9.042e-11 Identity = 52/200 (26.00%), Postives = 91/200 (45.50%), Query Frame = 2 Query: 119 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 718 L++ GS ++++W + ++ RT GH + S+ HP G AS SLD+ ++++DV I ++ V ++F P G LA A +VKLWD ++ + T S V V + P +A GS D TI +D+ + + +E PVR ++++P + D V+ ++ E Sbjct: 77 LIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASA-ADDHTVKLWDLTAGKVM----------FEFTGHSGP---VNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIEEEATPVRCILFNPDGCCLYGGFQDSLRVYGWEPE 262
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: GBLP_MEDSA (Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11 Identity = 50/184 (27.17%), Postives = 88/184 (47.83%), Query Frame = 2 Query: 56 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI---PRPEGLKPTDKSSSKK--FVLSVAWSPDGRRIACGSMDGTISVFDVTR 592 +AH + V V + P+T +++ S D TVK+W + +L T GH V +VA P G + AS D + ++D+ + +L+A S + + F P L A +S+K+WD + +++ L + + D ++ KK + S+ WS DG + G DG + V+ + R Sbjct: 146 DAHSDWVSCVRFSPSTPQ--PTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GSIIHALCFSPNRYWLCAA--TESSIKIWDLESKSIVEDLKVDLKTEADAAIGGDTTTKKKVIYCTSLNWSADGSTLFSGYTDGVVRVWGIGR 324
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP19_RAT (Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11 Identity = 58/236 (24.58%), Postives = 101/236 (42.80%), Query Frame = 2 Query: 14 PPSQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLW---DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712 P K+ + S H S+ + + + +LTG D+ V ++ Q+ T GH V SV HPS + SAS D+ +R++ V + + + A S V + G L S+ + W D T ++ K TD++S + + PDG G+MD I ++D+ + + GH P+ S+ +S + L +A+DD+ V ++D Sbjct: 201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYWAFSDIQTGRVLT----------KVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP19_MOUSE (Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11 Identity = 58/236 (24.58%), Postives = 101/236 (42.80%), Query Frame = 2 Query: 14 PPSQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLW---DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712 P K+ + S H S+ + + + +LTG D+ V ++ Q+ T GH V SV HPS + SAS D+ +R++ V + + + A S V + G L S+ + W D T ++ K TD++S + + PDG G+MD I ++D+ + + GH P+ S+ +S + L +A+DD+ V ++D Sbjct: 201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYWAFSDIQTGRVLT----------KVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PFS2_ASPOR (Polyadenylation factor subunit 2 OS=Aspergillus oryzae GN=pfs2 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11 Identity = 60/224 (26.79%), Postives = 97/224 (43.30%), Query Frame = 2 Query: 44 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDP-KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 709 ++V +AH + + A A L++G +K WRP+ +E + H V +A PS SAS D+ +++FD + + L +V + P KG L V+G VK WD T + TL S K V + +S + + A S D T VFD+ + + L GH PV SL + P+ ++ + S+D ++ Y Sbjct: 133 ETVMDAHYDQLQAGVTSLAWSHSHDWLISGGQKGDIKYWRPNFNNVETIDDAHHDAVRDLAWSPSDTKFLSASDDTTLKIFDFTSRTADTVLTGHNWDVKSCDWHPTKG--LLVSGSKDHQVKFWDPRTARCLTTLH-------------SHKNTVTATRFSRVNQNLLATSSRDQTARVFDLRMMRDICILRGHEKPVSSLTWHPIHSSLISTGSEDGSLYHY 341
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: FBXW7_MOUSE (F-box/WD repeat-containing protein 7 OS=Mus musculus GN=Fbxw7 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11 Identity = 56/217 (25.81%), Postives = 98/217 (45.16%), Query Frame = 2 Query: 62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712 H VW+ ++ R ++++GS D T+K+W + + T GH V + H ++ S S D+ +RV+D++T + L + V +Q+D + V+G VK+WD T + TL T++ S +F DG + GS+D +I V+DV +H L GH + + +L S + D+ V ++D Sbjct: 342 HTGGVWS------SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV--SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR---RVVSGAYDFMVKVWDPETETCLHTLQ-------GHTNRVYSLQF--------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---ELKDNILVSGNADSTVKIWD 529
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: FBXW7_HUMAN (F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11 Identity = 56/217 (25.81%), Postives = 98/217 (45.16%), Query Frame = 2 Query: 62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712 H VW+ ++ R ++++GS D T+K+W + + T GH V + H ++ S S D+ +RV+D++T + L + V +Q+D + V+G VK+WD T + TL T++ S +F DG + GS+D +I V+DV +H L GH + + +L S + D+ V ++D Sbjct: 420 HTGGVWS------SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV--SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR---RVVSGAYDFMVKVWDPETETCLHTLQ-------GHTNRVYSLQF--------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---ELKDNILVSGNADSTVKIWD 607
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: WDR5B_MOUSE (WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11 Identity = 52/201 (25.87%), Postives = 95/201 (47.26%), Query Frame = 2 Query: 122 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLV--YSPVDPRVLFSASDDTHVHMYDAE 718 L++ S D+T+K+W + +T GH V +P + S S D V++++V T + TL A + + F+ G +L V+G ++WD A+ + TL+ EG P V V +SP+G+ I ++D T+ ++D +R + L GH L +S + + S S+D V++++ + Sbjct: 96 LVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNG-SLIVSGSYDGLCRIWDAASGQCLRTLA---DEGNPP---------VSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQ 283
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11 Identity = 56/182 (30.77%), Postives = 88/182 (48.35%), Query Frame = 2 Query: 167 DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712 +D LER GH + S+ P+G A+AS D+F+ +++ +A V +QF P G LA A +V+LW IP G K ++ + V SV +S DG+ +A S D +I V+ + R +FL+ L H VR +SP D R++ S S+D + ++D Sbjct: 6 EDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASA-SRDRTVRLW------------IPDKRG-KFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSP-DGRLIVSCSEDKTIKIWD 172 The following BLAST results are available for this feature:
BLAST of FC931782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931782 ID=FC931782; Name=FC931782; organism=Citrus clementina; type=EST; length=731bpback to top |