FC931782

Overview
NameFC931782
Unique NameFC931782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 52/203 (25.62%), Postives = 90/203 (44.33%), Query Frame = 2
Query:   44 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYS 652
            K +   H   + +V + P+     +L+++ S D T+K+W  +  + ERT  GH   V  +    +G + AS S D  ++++D  T   + TL      V  ++F P G  L ++     ++K+W+ AT   I TL                + +V  +  S DG  IA  S D TI  +++ + + L     H   V  L +S
Sbjct:   99 KHILTGHRNCINSVKFHPSF----SLMVSASEDATIKVWDFESGEFERTLKGHTNAVQDIDFDKTGNLLASCSADLTIKLWDFQTYDCVKTLHGHDHNVSCVRFTPSGDQL-ISSSRDKTIKVWEAATGYCIKTL-------------VGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECLATYREHSHVVECLAFS 283          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 52/200 (26.00%), Postives = 90/200 (45.00%), Query Frame = 2
Query:  119 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 718
            LL TG  D  V +W  +      + TGH   + S+       +  + S    +RV+D++    + TL    + +  + F P G+ +A +G     +KLWD             R +G     KS ++  V  + +SPDG+ +A  + D T+ ++D+T  K +    GH  PV  + + P +  +L S S D  +  +D E
Sbjct:   35 LLATGGDDCRVNVWSVNKPNCVMSLTGHTTPIESLQISAKEELIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVA-SGSLDTDIKLWDV------------RRKGCIFKYKSHTQA-VRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPSE-YLLASGSSDRTIRFWDLE 219          

HSP 2 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 52/200 (26.00%), Postives = 91/200 (45.50%), Query Frame = 2
Query:  119 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 718
            L++ GS   ++++W  +  ++ RT  GH   + S+  HP G   AS SLD+ ++++DV     I   ++    V  ++F P G  LA A     +VKLWD     ++           + T  S     V  V + P    +A GS D TI  +D+ +   +  +E    PVR ++++P    +     D   V+ ++ E
Sbjct:   77 LIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASA-ADDHTVKLWDLTAGKVM----------FEFTGHSGP---VNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIEEEATPVRCILFNPDGCCLYGGFQDSLRVYGWEPE 262          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: GBLP_MEDSA (Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 50/184 (27.17%), Postives = 88/184 (47.83%), Query Frame = 2
Query:   56 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI---PRPEGLKPTDKSSSKK--FVLSVAWSPDGRRIACGSMDGTISVFDVTR 592
            +AH + V  V + P+T      +++ S D TVK+W   + +L  T  GH   V +VA  P G + AS   D  + ++D+     + +L+A  S +  + F P    L  A    +S+K+WD  + +++  L +      +     D ++ KK  +  S+ WS DG  +  G  DG + V+ + R
Sbjct:  146 DAHSDWVSCVRFSPSTPQ--PTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GSIIHALCFSPNRYWLCAA--TESSIKIWDLESKSIVEDLKVDLKTEADAAIGGDTTTKKKVIYCTSLNWSADGSTLFSGYTDGVVRVWGIGR 324          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP19_RAT (Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 58/236 (24.58%), Postives = 101/236 (42.80%), Query Frame = 2
Query:   14 PPSQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLW---DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            P    K+  + S    H  S+  +  +    +    +LTG  D+ V ++     Q+  T  GH   V SV  HPS  +  SAS D+ +R++ V   + +  + A  S V  +     G  L      S+  + W   D  T  ++           K TD++S      +  + PDG     G+MD  I ++D+     + +  GH  P+ S+ +S  +   L +A+DD+ V ++D
Sbjct:  201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYWAFSDIQTGRVLT----------KVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP19_MOUSE (Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 58/236 (24.58%), Postives = 101/236 (42.80%), Query Frame = 2
Query:   14 PPSQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLW---DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            P    K+  + S    H  S+  +  +    +    +LTG  D+ V ++     Q+  T  GH   V SV  HPS  +  SAS D+ +R++ V   + +  + A  S V  +     G  L      S+  + W   D  T  ++           K TD++S      +  + PDG     G+MD  I ++D+     + +  GH  P+ S+ +S  +   L +A+DD+ V ++D
Sbjct:  201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYWAFSDIQTGRVLT----------KVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PFS2_ASPOR (Polyadenylation factor subunit 2 OS=Aspergillus oryzae GN=pfs2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 60/224 (26.79%), Postives = 97/224 (43.30%), Query Frame = 2
Query:   44 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDP-KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 709
            ++V +AH + + A     A       L++G     +K WRP+   +E  +  H   V  +A  PS     SAS D+ +++FD  +  +   L     +V    + P KG  L V+G     VK WD  T   + TL              S K  V +  +S   + + A  S D T  VFD+   + +  L GH  PV SL + P+   ++ + S+D  ++ Y
Sbjct:  133 ETVMDAHYDQLQAGVTSLAWSHSHDWLISGGQKGDIKYWRPNFNNVETIDDAHHDAVRDLAWSPSDTKFLSASDDTTLKIFDFTSRTADTVLTGHNWDVKSCDWHPTKG--LLVSGSKDHQVKFWDPRTARCLTTLH-------------SHKNTVTATRFSRVNQNLLATSSRDQTARVFDLRMMRDICILRGHEKPVSSLTWHPIHSSLISTGSEDGSLYHY 341          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: FBXW7_MOUSE (F-box/WD repeat-containing protein 7 OS=Mus musculus GN=Fbxw7 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 56/217 (25.81%), Postives = 98/217 (45.16%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            H   VW+      ++ R  ++++GS D T+K+W  +  +   T  GH   V  +  H   ++  S S D+ +RV+D++T   +  L    + V  +Q+D +     V+G     VK+WD  T   + TL          T++  S +F        DG  +  GS+D +I V+DV     +H L GH      +    +   +L S + D+ V ++D
Sbjct:  342 HTGGVWS------SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV--SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR---RVVSGAYDFMVKVWDPETETCLHTLQ-------GHTNRVYSLQF--------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---ELKDNILVSGNADSTVKIWD 529          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: FBXW7_HUMAN (F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 56/217 (25.81%), Postives = 98/217 (45.16%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            H   VW+      ++ R  ++++GS D T+K+W  +  +   T  GH   V  +  H   ++  S S D+ +RV+D++T   +  L    + V  +Q+D +     V+G     VK+WD  T   + TL          T++  S +F        DG  +  GS+D +I V+DV     +H L GH      +    +   +L S + D+ V ++D
Sbjct:  420 HTGGVWS------SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV--SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR---RVVSGAYDFMVKVWDPETETCLHTLQ-------GHTNRVYSLQF--------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---ELKDNILVSGNADSTVKIWD 607          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: WDR5B_MOUSE (WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 52/201 (25.87%), Postives = 95/201 (47.26%), Query Frame = 2
Query:  122 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLV--YSPVDPRVLFSASDDTHVHMYDAE 718
            L++ S D+T+K+W     +  +T  GH   V     +P   +  S S D  V++++V T   + TL A    +  + F+  G +L V+G      ++WD A+   + TL+    EG  P         V  V +SP+G+ I   ++D T+ ++D +R + L    GH      L   +S    + + S S+D  V++++ +
Sbjct:   96 LVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNG-SLIVSGSYDGLCRIWDAASGQCLRTLA---DEGNPP---------VSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQ 283          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 56/182 (30.77%), Postives = 88/182 (48.35%), Query Frame = 2
Query:  167 DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            +D  LER   GH   + S+   P+G   A+AS D+F+ +++   +A           V  +QF P G  LA A     +V+LW            IP   G K ++  +    V SV +S DG+ +A  S D +I V+ + R +FL+ L  H   VR   +SP D R++ S S+D  + ++D
Sbjct:    6 EDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASA-SRDRTVRLW------------IPDKRG-KFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSP-DGRLIVSCSEDKTIKIWD 172          
The following BLAST results are available for this feature:
BLAST of FC931782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
LIS1_DICDI2.379e-1125.62Lissencephaly-1 homolog OS=Dictyostelium discoideu... [more]
KTNB1_CHICK2.379e-1126.00Katanin p80 WD40-containing subunit B1 OS=Gallus g... [more]
GBLP_MEDSA2.379e-1127.17Guanine nucleotide-binding protein subunit beta-li... [more]
PRP19_RAT3.108e-1124.58Pre-mRNA-processing factor 19 OS=Rattus norvegicus... [more]
PRP19_MOUSE3.108e-1124.58Pre-mRNA-processing factor 19 OS=Mus musculus GN=P... [more]
PFS2_ASPOR3.108e-1126.79Polyadenylation factor subunit 2 OS=Aspergillus or... [more]
FBXW7_MOUSE3.108e-1125.81F-box/WD repeat-containing protein 7 OS=Mus muscul... [more]
FBXW7_HUMAN3.108e-1125.81F-box/WD repeat-containing protein 7 OS=Homo sapie... [more]
WDR5B_MOUSE4.059e-1125.87WD repeat-containing protein 5B OS=Mus musculus GN... [more]
WD51B_PONAB4.059e-1130.77WD repeat-containing protein 51B OS=Pongo abelii G... [more]

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Properties
Property NameValue
Genbank descriptionC34201B06EF PostHarveN Citrus clementina cDNA clone C34201B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931782 ID=FC931782; Name=FC931782; organism=Citrus clementina; type=EST; length=731bp
GGTAGGGTTGTGTCCACCAAGCCAAATGAAATTTGCTGGTCTAAAATCAG
TCGAGAACGCGCACGAGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCG
ACCGAGACTCGACCGGCGCTCTTGCTGACGGGATCGTTGGACGAGACCGT
GAAGCTGTGGCGGCCCGACGACATGCAGCTGGAGCGGACCAACACTGGCC
ACTGTTTGGGCGTAGTCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCT
GCCTCTGCTTCTCTCGACAGCTTTGTTCGAGTATTTGATGTCGACACCAA
CGCCTCTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGC
AGTTCGATCCTAAGGGTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCA
TCTGTAAAGCTCTGGGACACAGCCACTTGGAATCTGATTGCCACCCTGTC
AATTCCTCGTCCAGAAGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGA
AGTTTGTTCTATCAGTTGCATGGAGTCCTGATGGCAGACGAATTGCTTGT
GGTTCAATGGATGGCACAATTTCTGTTTTTGATGTTACCCGTGCCAAATT
CCTGCATCATCTGGAAGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATT
CCCCTGTTGATCCACGTGTTCTCTTCTCTGCATCAGATGATACTCATGTG
CACATGTATGATGCTGAAGGNTAAAGTCTGG
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