FC931783

Overview
NameFC931783
Unique NameFC931783
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15393 contig Ccv1_Contig15393:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_THEAC (50S ribosomal protein L13P OS=Thermoplasma acidophilum GN=rpl13p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = 3
Query:   90 VIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKK 419
            VID  G + GRL++ VAK+LL G++I +V      I+G  EF   K K      +       R GP++ + P  IL ++I  M+P K  +G  AL R +V    PP  +K+K
Sbjct:    3 VIDASGAIYGRLSAYVAKRLLEGEEITIVNASKAVITGNKEFIIEKFK------ERLDIGSVRKGPYYPKTPENILRRSIGDMLPKKITKGKEALARCRVYRNTPPDIEKEK 108          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_SULTO (50S ribosomal protein L13P OS=Sulfolobus tokodaii GN=rpl13p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 49/144 (34.03%), Postives = 73/144 (50.69%), Query Frame = 3
Query:   78 ESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVG 509
            E +VV++ +  +LGR+A+ +AK L+ G+++VVV  E   ISG   R    Y          NP +      R P  I+ + +RGM+P K   G    + L V  GIP    K K+++  +   V RL+   KY TVG LS  +G
Sbjct:    3 EQLVVVNAENQILGRMATHIAKLLIQGKRVVVVNAEKAIISGPRARVVRGYSLIFSVRKFQNPEKNTIKRPRTPINIVKRTVRGMLP-KNKSGKMMFKNLIVFIGIPAEY-KDKQMIRFEDADVKRLK--GKYITVGELSKLLG 142          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_PICTO (50S ribosomal protein L13P OS=Picrophilus torridus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 44/148 (29.73%), Postives = 71/148 (47.97%), Query Frame = 3
Query:   84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQ 521
            ++ ID   H+ GRL+S VAK+LLNG+ I +V    + I+G  EF   K         +      R GP++ +   RIL ++I  M+P K   G  AL+R  V   +P   + K    +  A+     +    + T+G +S  +G  Y+
Sbjct:    1 MIYIDASNHIYGRLSSYVAKKLLNGESITIVNASKVVITGRKEFIIDK------FNNLRNTGSIRKGPYYPKTADRILKRSIGDMLPKKKTHGMEALKRCMVYANVPKSLENKNFERIESAMN----KKVTGFITLGEISKILGETYE 138          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_HALMA (50S ribosomal protein L13P OS=Haloarcula marismortui GN=rpl13p PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 47/148 (31.76%), Postives = 79/148 (53.38%), Query Frame = 3
Query:   66 MSSFESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVG 509
            ++ F++ V++D +  ++GR+AS VA+Q L+G+ + VV  E   I+G   R +     Y +++   N    G F+ + P  I  + IRGM+PHK  RG  A E ++V  G   P D+   V+   +L  L      K+ T+G +S  +G
Sbjct:    3 VAEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITG---REEQIVEKYEKRVDIGND--NGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLG--NPYDEDGEVLDGTSLDRL---SNIKFVTLGEISETLG 140          
The following BLAST results are available for this feature:
BLAST of FC931783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL13_THEAC6.467e-1135.7150S ribosomal protein L13P OS=Thermoplasma acidoph... [more]
RL13_SULTO8.446e-1134.0350S ribosomal protein L13P OS=Sulfolobus tokodaii ... [more]
RL13_PICTO8.446e-1129.7350S ribosomal protein L13P OS=Picrophilus torridus... [more]
RL13_HALMA8.446e-1131.7650S ribosomal protein L13P OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionC34201B07EF PostHarveN Citrus clementina cDNA clone C34201B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931783 ID=FC931783; Name=FC931783; organism=Citrus clementina; type=EST; length=701bp
GGGACTTGACACCCACGACAACAACCGCCGACAACATCCATCCCACGGGA
CATTAGATCACCAGGATGTCCTCCTTCGAATCAGTGGTCGTCATCGACGG
CAAAGGACACCTCCTCGGTCGTCTGGCCAGCACTGTCGCCAAGCAGCTGC
TCAACGGTCAGAAGATCGTCGTCGTGAGATGTGAGGCTCTCAACATCTCC
GGCGAGTTCTTCCGCGCGAAGCTCAAGTACCACGCCTACCTTCGCAAGAT
GACTCGTTTCAACCCCACCCGTGGTGGTCCCTTCCACTTCCGCGCTCCTT
CCCGTATCCTCTACAAGGCCATCCGCGGCATGATGCCCCACAAGACCGCC
CGTGGTGCCGCCGCTCTGGAGCGCCTCAAGGTCCTCGAGGGTATTCCCCC
TCCCTGCGACAAGAAGAAGCGTGTCGTTGTTCCCCAGGCTCTCCGTGTCC
TGCGTCTCCGCCCCGGTCGCAAGTACTGCACCGTCGGCCGTCTCAGCCAC
GAGGTTGGCTGGAAGTACCAGGATGTTGTTTCCAGACTCGAGGAGCGCAG
AAAGGTCAAGAGCAAGGCCTACTACGAGCGCAAGAAGGCCGCTCGCCGTG
TCCTTGCCAAGGCCGAGCAGGGAGCGAACGTGGACAGCAAGACCAAGACC
CAGCTTGCTCAGTTTGGCTACTAGATACCTTTAGCGTGGCTGGTTGTTGT
G
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