FC931784
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_META3 (Translation initiation factor 6 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=eif6 PE=3 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 3.119e-12 Identity = 34/107 (31.78%), Postives = 57/107 (53.27%), Query Frame = 3 Query: 393 KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVN 710 K I + +A GN I ND + +L + + D+ VEV + IA VGS +N+G LVHP T+ E+L+ + +L++ + GT ++G+ +GA + N Sbjct: 96 KEINAKNTAFGNLILLNDKGCIISEEL-ADFRKTFEDIFDVEVVAKNIAELPTVGSNGVATNKGALVHPDTTDEELELIKDVLKLKCIERGTASKGTPSVGACIVAN 201 HSP 2 Score: 37.7354 bits (86), Expect = 3.119e-12 Identity = 22/67 (32.84%), Postives = 34/67 (50.75%), Query Frame = 2 Query: 194 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394 +GV S T F L E+ + F+ L +PV +IG + +IG LC N G++LP T ++ Sbjct: 13 IGVLSLSTEKFGLAPYFAEENTINKFKKVLD--VPVKALNIGNSSLIGALCCANSYGIILPPFTLNR 77
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METVS (Translation initiation factor 6 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=eif6 PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 3.119e-12 Identity = 34/107 (31.78%), Postives = 58/107 (54.21%), Query Frame = 3 Query: 393 KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIGAGLTVN 710 ++++ + +A GN I N+ + +L + ++I DVLGVE A VGS +++G LVHP T +L+ ++ +L+V V GT NRG +G+ + N Sbjct: 96 EKLKAKNTAFGNLILTNNKGCIISEEL-QNFRKVIEDVLGVESGVGNYASLPTVGSNGVATDKGCLVHPLTDELELEWITDVLKVDYVGRGTANRGVTSVGSCILAN 201 HSP 2 Score: 43.8986 bits (102), Expect = 3.119e-12 Identity = 25/79 (31.65%), Postives = 39/79 (49.37%), Query Frame = 2 Query: 158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394 M + F +GV S T + L + ++ + L IPV + +I + +IG LCVGN NGLL+P+ T + Sbjct: 1 MIIKTYFSGVSTIGVLSLATEDYGLFPLSVEKNTLEKMKEVLN--IPVTQLNISNSSLIGSLCVGNSNGLLVPNIVTSK 77
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_SULAC (Translation initiation factor 6 OS=Sulfolobus acidocaldarius GN=eif6 PE=3 SV=2) HSP 1 Score: 65.4698 bits (158), Expect = 5.263e-12 Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 3 Query: 399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEV-FRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710 ++ R +ALGN I N H AL + DL + L ++ + TIA I VGS +++ GLVH + E+L +LS L +V L +GTVN GS I +GL N Sbjct: 95 VDIRPTALGNIILSNTHGALIYQDLSEAEINKVKKALQIDTAIKGTIANIITVGSVAVITDKAGLVHIDATEEELKKLSELFKVKLDSGTVNFGSVFIRSGLVAN 199 HSP 2 Score: 26.1794 bits (56), Expect = 5.263e-12 Identity = 10/28 (35.71%), Postives = 19/28 (67.86%), Query Frame = 2 Query: 299 VVKTSIGGNRIIGRLCVGNKNGLLLPHT 382 +++T+I + ++G L GN + +LLP T Sbjct: 47 IIQTTISKSVLVGILVTGNNDVILLPRT 74
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_UNCMA (Translation initiation factor 6 OS=Uncultured methanogenic archaeon RC-I GN=eif6 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12 Identity = 45/130 (34.62%), Postives = 68/130 (52.31%), Query Frame = 3 Query: 324 TGLSGGFVL----VTKMGFSCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 701 TG S GF++ + + + R++ +++A GN I ND AL H L + E I L VEV R TI G VG +N+G LVHP + E+L L L ++P+ GTV+ GS ++G+ + Sbjct: 62 TGNSNGFIVSDLTLDREANLLQEHGKVTRLKGKMTAAGNLILANDTAALVHPALTDKNIEAIEKTLKVEVRRGTIGGLKTVGMAGCATNKGILVHPRATEEELTVLEDLFKLPVDIGTVSFGSPLVGSAI 191
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_SULTO (Translation initiation factor 6 OS=Sulfolobus tokodaii GN=eif6 PE=3 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 1.152e-11 Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 3 Query: 399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710 ++ R +ALGN I N + AL + +L + I + L ++ + + +IA I VGS +++ GLVH T+ E+LD+LS L +V + GTVN GS I +GL N Sbjct: 95 LDIRPTALGNIILTNSYGALIYPELSSIEFKKIKESLQIDNIEKGSIANIITVGSVGVITDKAGLVHIDTTEEELDKLSKLFRVKIDTGTVNFGSAFIHSGLIAN 199 HSP 2 Score: 28.1054 bits (61), Expect = 1.152e-11 Identity = 14/48 (29.17%), Postives = 24/48 (50.00%), Query Frame = 2 Query: 251 ESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394 + TF+ E +++T+I + +IG GN N +LLP D+ Sbjct: 37 QKIQETFKTE------IIQTTIAKSFLIGIFVAGNNNVILLPRNVDDE 78
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METM6 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=eif6 PE=3 SV=1) HSP 1 Score: 48.1358 bits (113), Expect = 2.521e-11 Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 3 Query: 393 KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVN 710 +R++ + +A GN I N+ + +L R + I DVL VE A VGS +++G LVHP T +L+ + +L+V V GT NRG +GA + N Sbjct: 96 ERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELATVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILAN 201 HSP 2 Score: 41.2022 bits (95), Expect = 2.521e-11 Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 2 Query: 293 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394 IP + +I + +IG LCVGN NGLL+P TT++ Sbjct: 44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEK 77
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_THEPD (Translation initiation factor 6 OS=Thermofilum pendens (strain Hrk 5) GN=eif6 PE=3 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 2.522e-11 Identity = 33/101 (32.67%), Postives = 50/101 (49.50%), Query Frame = 3 Query: 408 RLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710 R + +GN + ND+ +A L + + IAD LGVE + +I VGS +NRG + P + E++ + L+V TVNRG + GL N Sbjct: 99 RETGIGNLVLANDNGCVASQILPKSAVDRIADALGVECIQMSIGDVPFVGSLSVATNRGVALPPLATEEEIKSVEEALKVKANVLTVNRGKMFLRTGLVAN 199 HSP 2 Score: 34.6538 bits (78), Expect = 2.522e-11 Identity = 17/66 (25.76%), Postives = 29/66 (43.94%), Query Frame = 2 Query: 194 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTD 391 +GV+ + F L+ E L+ + + S+ G R++G GN NGL++P D Sbjct: 15 IGVYIFANDRFALIPYDAPEKLDRKIAENLS--VDAFRVSVAGTRLVGIFLAGNNNGLVVPRVILD 78
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METMP (Translation initiation factor 6 OS=Methanococcus maripaludis GN=eif6 PE=3 SV=1) HSP 1 Score: 46.9802 bits (110), Expect = 3.273e-11 Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 3 Query: 393 KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVN 710 +R++ + +A GN I N+ + +L R + I DVL VE A VGS +++G LVHP T +L+ + +L+V V GT NRG +GA + N Sbjct: 96 ERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILAN 201 HSP 2 Score: 41.9726 bits (97), Expect = 3.273e-11 Identity = 17/34 (50.00%), Postives = 25/34 (73.53%), Query Frame = 2 Query: 293 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394 IP + +I + +IG LCVGN NGLL+P+ TT++ Sbjct: 44 IPATQLNISNSSLIGSLCVGNSNGLLVPNITTEK 77
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METM7 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=eif6 PE=3 SV=1) HSP 1 Score: 47.3654 bits (111), Expect = 4.249e-11 Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 3 Query: 393 KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVN 710 +R++ + +A GN I N+ + +L R + I DVL VE A VGS +++G LVHP T +L+ + +L+V V GT NRG +GA + N Sbjct: 96 ERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILAN 201 HSP 2 Score: 41.2022 bits (95), Expect = 4.249e-11 Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 2 Query: 293 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394 IP + +I + +IG LCVGN NGLL+P TT++ Sbjct: 44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEK 77
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METM5 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=eif6 PE=3 SV=1) HSP 1 Score: 46.9802 bits (110), Expect = 5.516e-11 Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 3 Query: 393 KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVN 710 +R++ + +A GN I N+ + +L R + I DVL VE A VGS +++G LVHP T +L+ + +L+V V GT NRG +GA + N Sbjct: 96 ERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILAN 201 HSP 2 Score: 41.2022 bits (95), Expect = 5.516e-11 Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 2 Query: 293 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394 IP + +I + +IG LCVGN NGLL+P TT++ Sbjct: 44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEK 77 The following BLAST results are available for this feature:
BLAST of FC931784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931784 ID=FC931784; Name=FC931784; organism=Citrus clementina; type=EST; length=712bpback to top |