FC931784

Overview
NameFC931784
Unique NameFC931784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_META3 (Translation initiation factor 6 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=eif6 PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.119e-12
Identity = 34/107 (31.78%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  393 KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVN 710
            K I  + +A GN I  ND   +   +L  +  +   D+  VEV  + IA    VGS    +N+G LVHP T+ E+L+ +  +L++  +  GT ++G+  +GA +  N
Sbjct:   96 KEINAKNTAFGNLILLNDKGCIISEEL-ADFRKTFEDIFDVEVVAKNIAELPTVGSNGVATNKGALVHPDTTDEELELIKDVLKLKCIERGTASKGTPSVGACIVAN 201          

HSP 2 Score: 37.7354 bits (86), Expect = 3.119e-12
Identity = 22/67 (32.84%), Postives = 34/67 (50.75%), Query Frame = 2
Query:  194 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394
            +GV S  T  F L      E+  + F+  L   +PV   +IG + +IG LC  N  G++LP  T ++
Sbjct:   13 IGVLSLSTEKFGLAPYFAEENTINKFKKVLD--VPVKALNIGNSSLIGALCCANSYGIILPPFTLNR 77          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METVS (Translation initiation factor 6 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=eif6 PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 3.119e-12
Identity = 34/107 (31.78%), Postives = 58/107 (54.21%), Query Frame = 3
Query:  393 KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIGAGLTVN 710
            ++++ + +A GN I  N+   +   +L +   ++I DVLGVE      A    VGS    +++G LVHP T   +L+ ++ +L+V  V  GT NRG   +G+ +  N
Sbjct:   96 EKLKAKNTAFGNLILTNNKGCIISEEL-QNFRKVIEDVLGVESGVGNYASLPTVGSNGVATDKGCLVHPLTDELELEWITDVLKVDYVGRGTANRGVTSVGSCILAN 201          

HSP 2 Score: 43.8986 bits (102), Expect = 3.119e-12
Identity = 25/79 (31.65%), Postives = 39/79 (49.37%), Query Frame = 2
Query:  158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394
            M  +  F     +GV S  T  + L  +   ++     +  L   IPV + +I  + +IG LCVGN NGLL+P+  T +
Sbjct:    1 MIIKTYFSGVSTIGVLSLATEDYGLFPLSVEKNTLEKMKEVLN--IPVTQLNISNSSLIGSLCVGNSNGLLVPNIVTSK 77          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_SULAC (Translation initiation factor 6 OS=Sulfolobus acidocaldarius GN=eif6 PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 5.263e-12
Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEV-FRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            ++ R +ALGN I  N H AL + DL       +   L ++   + TIA  I VGS    +++ GLVH   + E+L +LS L +V L +GTVN GS  I +GL  N
Sbjct:   95 VDIRPTALGNIILSNTHGALIYQDLSEAEINKVKKALQIDTAIKGTIANIITVGSVAVITDKAGLVHIDATEEELKKLSELFKVKLDSGTVNFGSVFIRSGLVAN 199          

HSP 2 Score: 26.1794 bits (56), Expect = 5.263e-12
Identity = 10/28 (35.71%), Postives = 19/28 (67.86%), Query Frame = 2
Query:  299 VVKTSIGGNRIIGRLCVGNKNGLLLPHT 382
            +++T+I  + ++G L  GN + +LLP T
Sbjct:   47 IIQTTISKSVLVGILVTGNNDVILLPRT 74          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_UNCMA (Translation initiation factor 6 OS=Uncultured methanogenic archaeon RC-I GN=eif6 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 45/130 (34.62%), Postives = 68/130 (52.31%), Query Frame = 3
Query:  324 TGLSGGFVL----VTKMGFSCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 701
            TG S GF++    + +         +  R++ +++A GN I  ND  AL H  L  +  E I   L VEV R TI G   VG     +N+G LVHP  + E+L  L  L ++P+  GTV+ GS ++G+ +
Sbjct:   62 TGNSNGFIVSDLTLDREANLLQEHGKVTRLKGKMTAAGNLILANDTAALVHPALTDKNIEAIEKTLKVEVRRGTIGGLKTVGMAGCATNKGILVHPRATEEELTVLEDLFKLPVDIGTVSFGSPLVGSAI 191          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_SULTO (Translation initiation factor 6 OS=Sulfolobus tokodaii GN=eif6 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.152e-11
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            ++ R +ALGN I  N + AL + +L     + I + L ++ + + +IA  I VGS    +++ GLVH  T+ E+LD+LS L +V +  GTVN GS  I +GL  N
Sbjct:   95 LDIRPTALGNIILTNSYGALIYPELSSIEFKKIKESLQIDNIEKGSIANIITVGSVGVITDKAGLVHIDTTEEELDKLSKLFRVKIDTGTVNFGSAFIHSGLIAN 199          

HSP 2 Score: 28.1054 bits (61), Expect = 1.152e-11
Identity = 14/48 (29.17%), Postives = 24/48 (50.00%), Query Frame = 2
Query:  251 ESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394
            +    TF+ E      +++T+I  + +IG    GN N +LLP    D+
Sbjct:   37 QKIQETFKTE------IIQTTIAKSFLIGIFVAGNNNVILLPRNVDDE 78          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METM6 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=eif6 PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 2.521e-11
Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 3
Query:  393 KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVN 710
            +R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA +  N
Sbjct:   96 ERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELATVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILAN 201          

HSP 2 Score: 41.2022 bits (95), Expect = 2.521e-11
Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 2
Query:  293 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394
            IP  + +I  + +IG LCVGN NGLL+P  TT++
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEK 77          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_THEPD (Translation initiation factor 6 OS=Thermofilum pendens (strain Hrk 5) GN=eif6 PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.522e-11
Identity = 33/101 (32.67%), Postives = 50/101 (49.50%), Query Frame = 3
Query:  408 RLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            R + +GN +  ND+  +A   L +   + IAD LGVE  + +I     VGS    +NRG  + P  + E++  +   L+V     TVNRG   +  GL  N
Sbjct:   99 RETGIGNLVLANDNGCVASQILPKSAVDRIADALGVECIQMSIGDVPFVGSLSVATNRGVALPPLATEEEIKSVEEALKVKANVLTVNRGKMFLRTGLVAN 199          

HSP 2 Score: 34.6538 bits (78), Expect = 2.522e-11
Identity = 17/66 (25.76%), Postives = 29/66 (43.94%), Query Frame = 2
Query:  194 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTD 391
            +GV+    + F L+     E         L+  +   + S+ G R++G    GN NGL++P    D
Sbjct:   15 IGVYIFANDRFALIPYDAPEKLDRKIAENLS--VDAFRVSVAGTRLVGIFLAGNNNGLVVPRVILD 78          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METMP (Translation initiation factor 6 OS=Methanococcus maripaludis GN=eif6 PE=3 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 3.273e-11
Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 3
Query:  393 KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVN 710
            +R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA +  N
Sbjct:   96 ERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILAN 201          

HSP 2 Score: 41.9726 bits (97), Expect = 3.273e-11
Identity = 17/34 (50.00%), Postives = 25/34 (73.53%), Query Frame = 2
Query:  293 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394
            IP  + +I  + +IG LCVGN NGLL+P+ TT++
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPNITTEK 77          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METM7 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=eif6 PE=3 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 4.249e-11
Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 3
Query:  393 KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVN 710
            +R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA +  N
Sbjct:   96 ERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILAN 201          

HSP 2 Score: 41.2022 bits (95), Expect = 4.249e-11
Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 2
Query:  293 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394
            IP  + +I  + +IG LCVGN NGLL+P  TT++
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEK 77          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METM5 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=eif6 PE=3 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 5.516e-11
Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 3
Query:  393 KRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVN 710
            +R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA +  N
Sbjct:   96 ERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILAN 201          

HSP 2 Score: 41.2022 bits (95), Expect = 5.516e-11
Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 2
Query:  293 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394
            IP  + +I  + +IG LCVGN NGLL+P  TT++
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEK 77          
The following BLAST results are available for this feature:
BLAST of FC931784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
IF6_META33.119e-1231.78Translation initiation factor 6 OS=Methanococcus a... [more]
IF6_METVS3.119e-1231.78Translation initiation factor 6 OS=Methanococcus v... [more]
IF6_SULAC5.263e-1239.05Translation initiation factor 6 OS=Sulfolobus acid... [more]
IF6_UNCMA7.830e-1234.62Translation initiation factor 6 OS=Uncultured meth... [more]
IF6_SULTO1.152e-1138.10Translation initiation factor 6 OS=Sulfolobus toko... [more]
IF6_METM62.521e-1133.64Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_THEPD2.522e-1132.67Translation initiation factor 6 OS=Thermofilum pen... [more]
IF6_METMP3.273e-1133.64Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_METM74.249e-1133.64Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_METM55.516e-1133.64Translation initiation factor 6 OS=Methanococcus m... [more]

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Properties
Property NameValue
Genbank descriptionC34201B08EF PostHarveN Citrus clementina cDNA clone C34201B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931784 ID=FC931784; Name=FC931784; organism=Citrus clementina; type=EST; length=712bp
GATCGCAGGTAGTTAGTTACATTTGATTTTATTGATATGGATATTCTGTA
CATGTTCGGTGGCTAACAGAAAAATCGAATTTGTATGTTATTCTTGCAGG
TCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATTCTGTTAATT
TGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTGAGGTTGGTG
TGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATTGGAGGTTCT
GAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGTTATTCCTGT
TGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGCTTTGTGTTG
GTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGACCAAGCGTAT
TGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATGACCATG
TTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATTATTGCA
GATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAATTGCCGGTAATATCCT
TGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCCACCCTC
ATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAAGTACCT
TTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGCTGGGTT
AACTGTGAATGA
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