FC931785

Overview
NameFC931785
Unique NameFC931785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14130 contig Ccv1_Contig14130:6..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.746e-63
Identity = 128/212 (60.38%), Postives = 153/212 (72.17%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAAE 710
            MK NI+ P TGCQK +E+DD++ +R F++KR++ EV+ D+LGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RIA KKQR  K + EAA+
Sbjct:    1 MKLNISFPATGCQKLIEVDDERNVRTFYEKRMATEVAADSLGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAAD 208          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_ONCMY (40S ribosomal protein S6 OS=Oncorhynchus mykiss GN=rps6 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.250e-62
Identity = 126/212 (59.43%), Postives = 153/212 (72.17%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAAE 710
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ D LG+E+KGY+ +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CI   +LSVLNLVI+KKGE D+PGLTD+  PR  GPKRASKIRKLFNL+KEDDVR+YV   RR  T +  K  +KAP+IQRLVTP  LQ KR RIA KKQR  K + EA+E
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADPLGDEWKGYMVRISGGNDKQGFPMKQGVLTHGRVRLLLAKGHSCY--RPRRTGERKRKSVRGCIGDANLSVLNLVIIKKGEKDIPGLTDSTVPRRLGPKRASKIRKLFNLAKEDDVRQYV--VRRPLTKEGKKPRTKAPRIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASE 208          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_XENLA (40S ribosomal protein S6 OS=Xenopus laevis GN=rps6 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.078e-61
Identity = 126/212 (59.43%), Postives = 152/212 (71.70%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAAE 710
            MK NI+ P TGCQK +E++D++KLR F++KR++ EV+ D LG+E+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIV+KGE D+PGLTD   PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RIA KKQR  K + EA+E
Sbjct:    1 MKLNISFPATGCQKLIEVEDERKLRTFYEKRMATEVAADPLGDEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVRKGEKDIPGLTDNTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLAKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASE 208          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_BRAFL (40S ribosomal protein S6 OS=Branchiostoma floridae GN=RPS6 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.832e-59
Identity = 122/212 (57.55%), Postives = 151/212 (71.23%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAA 707
            MK NI+ P TGCQK +E+DD++KLR F++KR+S +++ ++LG+E+KGY+ +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVI+KKGE D+PGLTDT  PR  GPKRA +IRKLFNL+KEDDVR+YV   RR    K GKK   K PKIQRL+TP  LQRKR   A K++R AK + E A
Sbjct:    1 MKINISYPATGCQKLIEVDDERKLRPFYEKRMSHQMTAESLGDEWKGYLVRISGGNDKQGFPMKQGVLTNGRVRLLLGKGHSCY--RPRRTGERKRKSVRGCIVDSNLSVLNLVILKKGEQDIPGLTDTTIPRRLGPKRAGRIRKLFNLNKEDDVRQYV--VRRPLPQKEGKKQKFKTPKIQRLITPQRLQRKRHMRAVKRRRYAKQREEEA 208          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 5.005e-59
Identity = 123/167 (73.65%), Postives = 132/167 (79.04%), Query Frame = 3
Query:  210 KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAAE 710
            KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLL+RGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGP+   +   L+   KEDDVRKYVNT    FTTK   K SKAPKIQRLVTPLTLQRKRARIA+KK+RIAK ++EAAE
Sbjct:    1 KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNT-TAEFTTKW--KGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAE 162          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_GLOMM (40S ribosomal protein S6 OS=Glossina morsitans morsitans GN=RpS6 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.537e-59
Identity = 123/213 (57.75%), Postives = 147/213 (69.01%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK-VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAAE 710
            MK N++ P TGCQK  E++D+ KLR F++K + Q V  D LG+E+KGY+ +I GG DKQGFPMKQGVLT  RVRLLL +G  C+                 CIV  ++SVL LVIVKKGE D+PGLTDT  PR  GPKRASKIRKL+NLSK DDVR YV   RR    K  KK +SKAPKIQRL+TP+ LQRKR RIA KK+R A  +  AA+
Sbjct:    1 MKLNVSYPATGCQKLFEVNDEHKLRVFYEKHMGQVVEADILGDEWKGYMLRISGGNDKQGFPMKQGVLTHDRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDANMSVLALVIVKKGEKDIPGLTDTSVPRRLGPKRASKIRKLYNLSKVDDVRPYV--IRRPLPAKDNKKAISKAPKIQRLITPVVLQRKRRRIALKKKRQAASKEAAAD 209          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6B_SCHPO (40S ribosomal protein S6-B OS=Schizosaccharomyces pombe GN=rps6b PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.902e-58
Identity = 124/213 (58.22%), Postives = 145/213 (68.08%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK-VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAAE 710
            MK NI+ P  G QK +EIDDD++LR F +KR+ QEV GD++G EF GYVFKI GG DKQGFPM QGVL P RVRLLL  G PC+                 CIV  DL+VL L IVK+GE D+PGLTD   P+  GPKRASKIR+ FNLSKEDDVR++V   R     K GKK  +KAPKIQRLVTP TLQ KR R A K+++  K + EAAE
Sbjct:    1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCY--RPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAE 210          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6A_SCHPO (40S ribosomal protein S6-A OS=Schizosaccharomyces pombe GN=rps6a PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.484e-58
Identity = 123/213 (57.75%), Postives = 145/213 (68.08%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK-VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAAE 710
            MK NI+ P  G QK +EIDDD++LR F +KR+ QEV GD++G EF GYVFKI GG DKQGFPM QGVL P RVRLLL  G PC+                 CIV  DL+VL L I+K+GE D+PGLTD   P+  GPKRASKIR+ FNLSKEDDVR++V   R     K GKK  +KAPKIQRLVTP TLQ KR R A K+++  K + EAAE
Sbjct:    1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCY--RPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAE 210          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_DROME (40S ribosomal protein S6 OS=Drosophila melanogaster GN=RpS6 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.534e-58
Identity = 122/212 (57.55%), Postives = 148/212 (69.81%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK-VSKAPKIQRLVTPLTLQRKRARIA-EKKQRIAKGQAEA 704
            MK N++ P TGCQK  E+ D+ KLR F++KR+ Q V  D LG+E+KGY  +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  ++SVL LV++KKGE D+PGLTDT  PR  GPKRASKIRKL+NLSKEDDVR++V   RR    K  KK  SKAPKIQRL+TP+ LQRK  RIA +KK++IA  +A A
Sbjct:    1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFV--VRRPLPAKDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQIASKEASA 208          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_AEDAE (40S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 5.534e-58
Identity = 121/212 (57.08%), Postives = 150/212 (70.75%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPKIQRLVTPLTLQRKRARIAEKKQRI-AKGQAEA 704
            MK N++ P TG QK  E+ DD KLR F+DKR+  E++ D LG+E+KGYVFKI GG DKQGFPMKQGVLT  RVRLLL +G  C+                 CIV  +LS L L++VKKGE D+PGLTDT  PR  GPKRAS IRKL+NL+KEDDVR++V   +R    K GKK  +KAPKIQRL+TP+ LQRKR R+A KK+R+ ++ +AEA
Sbjct:    1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKDIPGLTDTTVPRRLGPKRASNIRKLYNLTKEDDVRQFV--VKRPLPEKDGKKARTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEA 208          
The following BLAST results are available for this feature:
BLAST of FC931785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_CHICK9.746e-6360.3840S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]
RS6_ONCMY8.250e-6259.4340S ribosomal protein S6 OS=Oncorhynchus mykiss GN... [more]
RS6_XENLA1.078e-6159.4340S ribosomal protein S6 OS=Xenopus laevis GN=rps6... [more]
RS6_BRAFL3.832e-5957.5540S ribosomal protein S6 OS=Branchiostoma floridae... [more]
RS6_TOBAC5.005e-5973.6540S ribosomal protein S6 (Fragment) OS=Nicotiana t... [more]
RS6_GLOMM6.537e-5957.7540S ribosomal protein S6 OS=Glossina morsitans mor... [more]
RS6B_SCHPO1.902e-5858.2240S ribosomal protein S6-B OS=Schizosaccharomyces ... [more]
RS6A_SCHPO2.484e-5857.7540S ribosomal protein S6-A OS=Schizosaccharomyces ... [more]
RS6_DROME5.534e-5857.5540S ribosomal protein S6 OS=Drosophila melanogaste... [more]
RS6_AEDAE5.534e-5857.0840S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 ... [more]

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Properties
Property NameValue
Genbank descriptionC34201B09EF PostHarveN Citrus clementina cDNA clone C34201B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931785 ID=FC931785; Name=FC931785; organism=Citrus clementina; type=EST; length=712bp
GAAGGAGCATTTGTGCAGCAGCAGCGAGAGAGCCGAAGAACTCCACTGGG
TTAGTCTGATAGCTGCAGAACAAAATGAAGTTCAATATTGCAAATCCCAC
CACTGGGTGCCAAAAGAAGCTCGAAATCGACGATGACCAGAAACTCCGAG
CATTTTTCGACAAGAGGATCTCACAAGAAGTTAGTGGTGATGCTCTTGGG
GAGGAGTTCAAAGGTTATGTCTTTAAGATAATGGGAGGCTGTGACAAGCA
AGGTTTCCCAATGAAGCAAGGAGTGTTGACTCCTGGACGTGTTCGTCTTC
TGCTCCACAGAGGTACTCCTTGCTTCCGTGGATATGGAAGGAGAGATGGA
GAGCGTCGGAGGAAATCTGTTCGTGGATGCATTGTTAGTCCAGATCTCTC
AGTGTTGAACTTGGTCATCGTGAAAAAGGGAGAACATGACCTTCCTGGAC
TTACTGACACTGAGAAGCCCAGGATGAGAGGTCCGAAGAGAGCCTCAAAG
ATCAGGAAGTTGTTTAACCTTTCCAAAGAAGATGATGTTCGGAAGTATGT
CAACACATACCGTCGGACCTTTACAACCAAAACTGGTAAAAAGGTTAGCA
AGGCTCCTAAAATTCAGAGGCTGGTGACTCCTTTGACTTTGCAGAGGAAG
CGCGCCAGAATTGCTGAGAAGAAGCAGAGAATTGCCAAAGGCCAAGCAGA
AGCTGCTGAATA
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