FC931785

Overview
NameFC931785
Unique NameFC931785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14130 contig Ccv1_Contig14130:6..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_SPOFR (40S ribosomal protein S6 OS=Spodoptera frugiperda GN=RpS6 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.610e-57
Identity = 120/209 (57.42%), Postives = 146/209 (69.86%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS----KAPKIQRLVTPLTLQRKRARIAEKKQRIAK 689
            MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV +I GG DKQGFPMKQGVLT  RVRLL+ +G  C+                 CIV  +LSVL LVIV+KGE ++PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   +R    K GK+ +    KAPKIQRLVTP+ LQR+R R+A KK+R+AK
Sbjct:    1 MKLNVSFPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRIAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCY--RPRRDGERKRKSVRGCIVDANLSVLALVIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAK 205          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_MANSE (40S ribosomal protein S6 OS=Manduca sexta GN=RpS6 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.587e-57
Identity = 119/216 (55.09%), Postives = 149/216 (68.98%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS----KAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAAE 710
            MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+                 CIV  +LSVL LVIV+KGE ++PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   +     K GK+ +    KAPKIQRLVTP+ LQR+R R+A KK+R+AK ++  A+
Sbjct:    1 MKLNVSFPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCY--RPRRDGERKRKSVRGCIVDANLSVLALVIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKALLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKSAEAD 212          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_AEDAL (40S ribosomal protein S6 OS=Aedes albopictus GN=RpS6 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.685e-57
Identity = 121/212 (57.08%), Postives = 149/212 (70.28%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPKIQRLVTPLTLQRKRARIAEKKQRI-AKGQAEA 704
            MK N++ P TG QK  E+ DD KLR F+DKR+  E++ D LG+E+KGYVFKI GG DKQGFPMKQGVLT  RVRLLL +G  C+                 CIV  +LS L L++VKKGE D+PGLTDT   R  GPKRAS IRKL+NL+KEDDVR+YV   +R    K GKK  +KAPKIQRL+TP+ LQRKR R+A KK+R+ ++ +AEA
Sbjct:    1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKDIPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYV--VKRPLPEKDGKKPRTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEA 208          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_YEAST (40S ribosomal protein S6 OS=Saccharomyces cerevisiae GN=RPS6A PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.571e-55
Identity = 122/211 (57.82%), Postives = 141/211 (66.82%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAA 707
            MK NI+ P  G QK  EIDD+ ++R FFDKRI QEV G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P R++LLL +   C+                  IV PDL+VL LVIVKKGE +L GLTDT  P+  GPKRA+ IRK F LSKEDDVR +V    R   TK  K  +KAPKIQRLVTP  LQRKR + A  K R A+ Q EAA
Sbjct:    1 MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKNVSCY--RPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFV---IRREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRA-LKVRNAQAQREAA 205          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_CAEEL (40S ribosomal protein S6 OS=Caenorhabditis elegans GN=rps-6 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.848e-54
Identity = 112/211 (53.08%), Postives = 146/211 (69.19%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAA 707
            M+ N A P TG QK  E+D+++KLR FF+KR+SQEV+ DALG+E+KGYV +I GG DKQGFPMKQG+LT GRVRLLL +G  C+                 CIV  ++S L+LVIVKKG+ ++ GLTD+  PR  GPKRASKIRKLFNL+K DDV KYV T+ +TF     K +  APKIQRL+TP  + RK+  + +K+ +  K + +AA
Sbjct:    1 MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFPMKQGILTNGRVRLLLKKGQSCY--RERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDGVTKTI--APKIQRLITPARIARKKYLLRQKRNQKIKMRDDAA 207          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_CANGA (40S ribosomal protein S6 OS=Candida glabrata GN=RPS6A PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.332e-54
Identity = 117/211 (55.45%), Postives = 141/211 (66.82%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAA 707
            MK NIA P  G QK +E+DD+ ++R F+DKRI QE+ G+A+G+EFKGY FKI GG DKQGFPMKQGVL P RV+LLL +G  C+                  IV PDL+VL+LVIVKKGE +L G+TD   P+  GPKRA+ IRK F L+KEDDVR +V    R   TK  K  +KAPKIQRLVTP  LQRKR +    K R A+ Q EAA
Sbjct:    1 MKLNIAYPVNGTQKTVEVDDEHRVRVFYDKRIGQEIEGEAVGDEFKGYTFKITGGNDKQGFPMKQGVLLPTRVKLLLAKGHSCY--RPRRSGERKRKSVRGAIVGPDLAVLSLVIVKKGEQELEGVTDATVPKRLGPKRANHIRKFFGLTKEDDVRDFV---IRREVTKGEKTYTKAPKIQRLVTPQRLQRKRYQ-RNLKVRNAQAQREAA 205          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_YARLI (40S ribosomal protein S6 OS=Yarrowia lipolytica GN=RPS6 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.270e-54
Identity = 115/211 (54.50%), Postives = 144/211 (68.25%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAA 707
            MK NIA P  G QK ++I+D+ ++R F++KR+ QEV  D LG+EFKGYV KI GG DKQGFPMKQGV+ P RVRLLL + + C+                 CIVS DLSVL++VIVK+G+ D+ GLT    PR  GPKRA+ IRKLF LSKEDDVR+YV   RR  TTK+GK  +KAPKIQRL+TP  L  K A++ EKK +  +   +AA
Sbjct:    1 MKLNIAYPAQGTQKCIDIEDEHRVRGFYEKRMGQEVEADFLGDEFKGYVLKITGGNDKQGFPMKQGVMHPTRVRLLLSKDSSCY--RSRRAGERKRKSVRGCIVSSDLSVLSVVIVKQGDADIEGLTTETVPRRLGPKRANNIRKLFALSKEDDVRQYV--IRREVTTKSGKTYTKAPKIQRLITPRRLAHK-AQLREKKVKAIQASKDAA 206          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_DEBHA (40S ribosomal protein S6 OS=Debaryomyces hansenii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.270e-54
Identity = 112/212 (52.83%), Postives = 144/212 (67.92%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAAE 710
            MK NI+ P  G QK ++I+D+ KLR F++KR+ QEV GD +G+EFKGY+F+I GG DKQGFPMKQGV+ P RV+LLL +G  C+                 CIV+ DL+VL L +VK+G+ D+ GLTDT  P+  GPKRA+ IRK F L+KEDDVR++V    R    K  KK +KAPKIQRLVTP TLQRKRA  A+K +   + +  AAE
Sbjct:    1 MKLNISYPANGTQKCIDIEDEHKLRVFYEKRMGQEVEGDTVGDEFKGYIFRITGGNDKQGFPMKQGVMHPTRVKLLLAKGHSCY--RPRRTGERKRKSVRGCIVAQDLAVLALSVVKQGDSDIEGLTDTTTPKRLGPKRANNIRKFFGLTKEDDVRQFV---VRREVVKGDKKYTKAPKIQRLVTPQTLQRKRALKAQKVKNAQQQRDAAAE 207          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_KLUMA (40S ribosomal protein S6 OS=Kluyveromyces marxianus GN=RPS6 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.842e-53
Identity = 117/211 (55.45%), Postives = 143/211 (67.77%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAA 707
            MK NI+ P  G QK +EIDD+ ++R F+DKRI QEV G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LL+ +GT C+                  IV PDL+VL LVIVKKG+ ++ G+T+   P+  GPKRA+ IRK F L+KEDDVR YV    R   TK  K  +KAPKIQRLVTP  LQRKR + A K +  A+ Q EAA
Sbjct:    1 MKLNISYPINGTQKCVEIDDEHRVRVFYDKRIGQEVDGEAVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLMAKGTSCY--RPRRNGERKRKSVRGAIVGPDLAVLALVIVKKGDQEIEGVTNETVPKRLGPKRANNIRKFFGLTKEDDVRDYV---IRREVTKGEKTYTKAPKIQRLVTPQRLQRKRQQKALKIKN-AQAQREAA 205          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.560e-52
Identity = 112/211 (53.08%), Postives = 142/211 (67.30%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAA 707
            MK NI+ P  G QK +E+DD+ ++R F+DKRI QEV+G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LL+ +GT C+                  IV PDL+VL L+I KKG+ ++ G+T+   P+  GPKRA+ IRK F L+K+DDVR +V    R    K  K  +KAPKIQRLVTP  LQRKR + A  K R A+ Q EAA
Sbjct:    1 MKLNISYPVNGTQKTIEVDDEHRVRVFYDKRIGQEVNGEAVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLMAKGTSCY--RPRRNGERKRKSVRGAIVGPDLAVLALIITKKGDQEIEGITNESVPKRLGPKRANNIRKFFGLTKDDDVRDFV---IRREVVKGDKTYTKAPKIQRLVTPQRLQRKRHQRA-LKVRNAQAQREAA 205          
The following BLAST results are available for this feature:
BLAST of FC931785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_SPOFR1.610e-5757.4240S ribosomal protein S6 OS=Spodoptera frugiperda ... [more]
RS6_MANSE3.587e-5755.0940S ribosomal protein S6 OS=Manduca sexta GN=RpS6 ... [more]
RS6_AEDAL4.685e-5757.0840S ribosomal protein S6 OS=Aedes albopictus GN=Rp... [more]
RS6_YEAST2.571e-5557.8240S ribosomal protein S6 OS=Saccharomyces cerevisi... [more]
RS6_CAEEL4.848e-5453.0840S ribosomal protein S6 OS=Caenorhabditis elegans... [more]
RS6_CANGA6.332e-5455.4540S ribosomal protein S6 OS=Candida glabrata GN=RP... [more]
RS6_YARLI8.270e-5454.5040S ribosomal protein S6 OS=Yarrowia lipolytica GN... [more]
RS6_DEBHA8.270e-5452.8340S ribosomal protein S6 OS=Debaryomyces hansenii ... [more]
RS6_KLUMA1.842e-5355.4540S ribosomal protein S6 OS=Kluyveromyces marxianu... [more]
RS6_ASHGO1.560e-5253.0840S ribosomal protein S6 OS=Ashbya gossypii GN=RPS... [more]

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Properties
Property NameValue
Genbank descriptionC34201B09EF PostHarveN Citrus clementina cDNA clone C34201B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931785 ID=FC931785; Name=FC931785; organism=Citrus clementina; type=EST; length=712bp
GAAGGAGCATTTGTGCAGCAGCAGCGAGAGAGCCGAAGAACTCCACTGGG
TTAGTCTGATAGCTGCAGAACAAAATGAAGTTCAATATTGCAAATCCCAC
CACTGGGTGCCAAAAGAAGCTCGAAATCGACGATGACCAGAAACTCCGAG
CATTTTTCGACAAGAGGATCTCACAAGAAGTTAGTGGTGATGCTCTTGGG
GAGGAGTTCAAAGGTTATGTCTTTAAGATAATGGGAGGCTGTGACAAGCA
AGGTTTCCCAATGAAGCAAGGAGTGTTGACTCCTGGACGTGTTCGTCTTC
TGCTCCACAGAGGTACTCCTTGCTTCCGTGGATATGGAAGGAGAGATGGA
GAGCGTCGGAGGAAATCTGTTCGTGGATGCATTGTTAGTCCAGATCTCTC
AGTGTTGAACTTGGTCATCGTGAAAAAGGGAGAACATGACCTTCCTGGAC
TTACTGACACTGAGAAGCCCAGGATGAGAGGTCCGAAGAGAGCCTCAAAG
ATCAGGAAGTTGTTTAACCTTTCCAAAGAAGATGATGTTCGGAAGTATGT
CAACACATACCGTCGGACCTTTACAACCAAAACTGGTAAAAAGGTTAGCA
AGGCTCCTAAAATTCAGAGGCTGGTGACTCCTTTGACTTTGCAGAGGAAG
CGCGCCAGAATTGCTGAGAAGAAGCAGAGAATTGCCAAAGGCCAAGCAGA
AGCTGCTGAATA
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