FC931785

Overview
NameFC931785
Unique NameFC931785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14130 contig Ccv1_Contig14130:6..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_KLULA (40S ribosomal protein S6 OS=Kluyveromyces lactis GN=RPS6 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.037e-52
Identity = 114/211 (54.03%), Postives = 140/211 (66.35%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAA 707
            MK NI+ P  G QK +EIDD+ ++R F+DKRI QEV G+++G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LLL +G  C+                  IV PDL+VL L+I KKGE ++ G+T+   P+  GPKRA+ IRK F L+KEDDVR YV    R   TK  K  +KAPKIQRLVTP  LQRKR +    K + A+ Q EAA
Sbjct:    1 MKLNISYPINGTQKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLLAKGHSCY--RPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIEGITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYV---IRREVTKGDKSYTKAPKIQRLVTPQRLQRKRQQ-KSLKIKNAQAQREAA 205          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_DICDI (40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.558e-51
Identity = 112/212 (52.83%), Postives = 134/212 (63.21%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKGQAEAAE 710
            MK NIA P  G QKK+ I+D  K+R F +KRI QEV    LG+EFKGYVFKI GG D +GFPM QGV  P RVRLLL   + CF                 CIV+ D++ L L+IVKKG+ ++PGLTD   P  +GPKRAS IRKLF LSK++DVR +V   R    T   K  SKAPKIQRLVTP T+ R++A  A+K  R  K   EAAE
Sbjct:    1 MKLNIAYPVNGSQKKINIEDKNKVRCFMEKRIGQEVEATTLGDEFKGYVFKITGGNDTEGFPMMQGVGAPTRVRLLLDGRSGCF--KPSRDGERKRKSVRGCIVAEDIASLQLIIVKKGDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFV-IRRELPATDKRKAKSKAPKIQRLVTPTTVARRKALRAKKAARHTKASNEAAE 209          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_LEIMA (40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.113e-41
Identity = 103/215 (47.91%), Postives = 128/215 (59.53%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLQRKRARIAEK-KQRIAKGQAEAAE 710
            MK NIA P  G  K+ EI D+   R    D R+  EV G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     K+GKK   KAPKIQRL+TP    R +AR A+K K  IAK +A AAE
Sbjct:    1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITP----RVKARRAKKAKDAIAKVRASAAE 208          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.369e-40
Identity = 102/215 (47.44%), Postives = 127/215 (59.07%), Query Frame = 3
Query:   75 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLQRKRARIAEK-KQRIAKGQAEAAE 710
            M  NIA P  G  K+ EI D+   R    D R+  EV G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     K+GKK   KAPKIQRL+TP    R +AR A+K K  IAK +A AAE
Sbjct:    1 MYLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITP----RVKARRAKKAKDAIAKVRASAAE 208          
BLAST of FC931785 vs. ExPASy Swiss-Prot
Match: RS6_ENCCU (40S ribosomal protein S6 OS=Encephalitozoon cuniculi GN=RPS6 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 61/199 (30.65%), Postives = 101/199 (50.75%), Query Frame = 3
Query:  123 EIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNL-SKEDDVRKYVNTYRRT---------FTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAK 689
            EI+   ++R  +DK+I  +  G  LGEEF+G + +I GG D QGFPM  G LT  RVR LL +G   +                  IVS ++ VLNL+I++ GE ++ GLT+        P++  K+RK+F +  +E +V  Y+    ++              GK++ +  + +  +  + L+RKR    E+K+ + K
Sbjct:    3 EIERRNEVR-LYDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVRPLLSKGDAGY--RCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHLPRKEKKLRKMFGVPDEEKNVVGYIRNILKSECDDPKKIPKIRHNGKRMKREQERREQIMKIRLERKRILEEERKEYLEK 198          
The following BLAST results are available for this feature:
BLAST of FC931785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_KLULA2.037e-5254.0340S ribosomal protein S6 OS=Kluyveromyces lactis G... [more]
RS6_DICDI8.558e-5152.8340S ribosomal protein S6 OS=Dictyostelium discoide... [more]
RS6_LEIMA2.113e-4147.9140S ribosomal protein S6 OS=Leishmania major GN=RP... [more]
RS6_LEIIN1.369e-4047.4440S ribosomal protein S6 OS=Leishmania infantum GN... [more]
RS6_ENCCU4.287e-1830.6540S ribosomal protein S6 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionC34201B09EF PostHarveN Citrus clementina cDNA clone C34201B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931785 ID=FC931785; Name=FC931785; organism=Citrus clementina; type=EST; length=712bp
GAAGGAGCATTTGTGCAGCAGCAGCGAGAGAGCCGAAGAACTCCACTGGG
TTAGTCTGATAGCTGCAGAACAAAATGAAGTTCAATATTGCAAATCCCAC
CACTGGGTGCCAAAAGAAGCTCGAAATCGACGATGACCAGAAACTCCGAG
CATTTTTCGACAAGAGGATCTCACAAGAAGTTAGTGGTGATGCTCTTGGG
GAGGAGTTCAAAGGTTATGTCTTTAAGATAATGGGAGGCTGTGACAAGCA
AGGTTTCCCAATGAAGCAAGGAGTGTTGACTCCTGGACGTGTTCGTCTTC
TGCTCCACAGAGGTACTCCTTGCTTCCGTGGATATGGAAGGAGAGATGGA
GAGCGTCGGAGGAAATCTGTTCGTGGATGCATTGTTAGTCCAGATCTCTC
AGTGTTGAACTTGGTCATCGTGAAAAAGGGAGAACATGACCTTCCTGGAC
TTACTGACACTGAGAAGCCCAGGATGAGAGGTCCGAAGAGAGCCTCAAAG
ATCAGGAAGTTGTTTAACCTTTCCAAAGAAGATGATGTTCGGAAGTATGT
CAACACATACCGTCGGACCTTTACAACCAAAACTGGTAAAAAGGTTAGCA
AGGCTCCTAAAATTCAGAGGCTGGTGACTCCTTTGACTTTGCAGAGGAAG
CGCGCCAGAATTGCTGAGAAGAAGCAGAGAATTGCCAAAGGCCAAGCAGA
AGCTGCTGAATA
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