FC931787

Overview
NameFC931787
Unique NameFC931787
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15088 contig Ccv1_Contig15088:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.964e-54
Identity = 112/186 (60.22%), Postives = 134/186 (72.04%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTP 667
            MK NI+ P TGCQK +E+ D++ +R F++KR++ EV  D+LGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP
Sbjct:    1 MKLNISFPATGCQKLIEVDDERNVRTFYEKRMATEVAADSLGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTP 182          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_XENLA (40S ribosomal protein S6 OS=Xenopus laevis GN=rps6 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.747e-54
Identity = 111/186 (59.68%), Postives = 133/186 (71.51%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTP 667
            MK NI+ P TGCQK +E+ D++KLR F++KR++ EV  D LG+E+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIV+KGE D+PGLTD   PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP
Sbjct:    1 MKLNISFPATGCQKLIEVEDERKLRTFYEKRMATEVAADPLGDEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVRKGEKDIPGLTDNTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLAKEGKKPRTKAPKIQRLVTP 182          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_ONCMY (40S ribosomal protein S6 OS=Oncorhynchus mykiss GN=rps6 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.663e-53
Identity = 110/186 (59.14%), Postives = 134/186 (72.04%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTP 667
            MK NI+ P TGCQK +E+ D++KLR F++KR++ EV  D LG+E+KGY+ +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CI   +LSVLNLVI+KKGE D+PGLTD+  PR  GPKRASKIRKLFNL+KEDDVR+YV   RR  T +  K  +KAP+IQRLVTP
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADPLGDEWKGYMVRISGGNDKQGFPMKQGVLTHGRVRLLLAKGHSCY--RPRRTGERKRKSVRGCIGDANLSVLNLVIIKKGEKDIPGLTDSTVPRRLGPKRASKIRKLFNLAKEDDVRQYV--VRRPLTKEGKKPRTKAPRIQRLVTP 182          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_BRAFL (40S ribosomal protein S6 OS=Branchiostoma floridae GN=RPS6 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.836e-53
Identity = 109/187 (58.29%), Postives = 134/187 (71.66%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLVTP 667
            MK NI+ P TGCQK +E+ D++KLR F++KR+S ++  ++LG+E+KGY+ +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVI+KKGE D+PGLTDT  PR  GPKRA +IRKLFNL+KEDDVR+YV   RR    K GKK   K PKIQRL+TP
Sbjct:    1 MKINISYPATGCQKLIEVDDERKLRPFYEKRMSHQMTAESLGDEWKGYLVRISGGNDKQGFPMKQGVLTNGRVRLLLGKGHSCY--RPRRTGERKRKSVRGCIVDSNLSVLNLVILKKGEQDIPGLTDTTIPRRLGPKRAGRIRKLFNLNKEDDVRQYV--VRRPLPQKEGKKQKFKTPKIQRLITP 183          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_DROME (40S ribosomal protein S6 OS=Drosophila melanogaster GN=RpS6 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.407e-52
Identity = 109/188 (57.98%), Postives = 131/188 (69.68%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLVTPL 670
            MK N++ P TGCQK  E+ D+ KLR F++KR+ Q V  D LG+E+KGY  +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  ++SVL LV++KKGE D+PGLTDT  PR  GPKRASKIRKL+NLSKEDDVR++V   RR    K  KK  SKAPKIQRL+TP+
Sbjct:    1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFV--VRRPLPAKDNKKATSKAPKIQRLITPV 184          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_GLOMM (40S ribosomal protein S6 OS=Glossina morsitans morsitans GN=RpS6 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.135e-52
Identity = 109/188 (57.98%), Postives = 129/188 (68.62%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLVTPL 670
            MK N++ P TGCQK  E+ D+ KLR F++K + Q V  D LG+E+KGY+ +I GG DKQGFPMKQGVLT  RVRLLL +G  C+                 CIV  ++SVL LVIVKKGE D+PGLTDT  PR  GPKRASKIRKL+NLSK DDVR YV   RR    K  KK +SKAPKIQRL+TP+
Sbjct:    1 MKLNVSYPATGCQKLFEVNDEHKLRVFYEKHMGQVVEADILGDEWKGYMLRISGGNDKQGFPMKQGVLTHDRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDANMSVLALVIVKKGEKDIPGLTDTSVPRRLGPKRASKIRKLYNLSKVDDVRPYV--IRRPLPAKDNKKAISKAPKIQRLITPV 184          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_AEDAE (40S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 6.985e-52
Identity = 108/188 (57.45%), Postives = 130/188 (69.15%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKV-SKAPKIQRLVTPL 670
            MK N++ P TG QK  E+ DD KLR F+DKR+  E+  D LG+E+KGYVFKI GG DKQGFPMKQGVLT  RVRLLL +G  C+                 CIV  +LS L L++VKKGE D+PGLTDT  PR  GPKRAS IRKL+NL+KEDDVR++V   +R    K GKK  +KAPKIQRL+TP+
Sbjct:    1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKDIPGLTDTTVPRRLGPKRASNIRKLYNLTKEDDVRQFV--VKRPLPEKDGKKARTKAPKIQRLITPV 184          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6B_SCHPO (40S ribosomal protein S6-B OS=Schizosaccharomyces pombe GN=rps6b PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.556e-51
Identity = 111/189 (58.73%), Postives = 128/189 (67.72%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLVTPLT 673
            MK NI+ P  G QK +EI DD++LR F +KR+ QEV GD++G EF GYVFKI GG DKQGFPM QGVL P RVRLLL  G PC+                 CIV  DL+VL L IVK+GE D+PGLTD   P+  GPKRASKIR+ FNLSKEDDVR++V   R     K GKK  +KAPKIQRLVTP T
Sbjct:    1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCY--RPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRT 186          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_SPOFR (40S ribosomal protein S6 OS=Spodoptera frugiperda GN=RpS6 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.032e-51
Identity = 109/191 (57.07%), Postives = 131/191 (68.59%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS----KAPKIQRLVTPL 670
            MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV +I GG DKQGFPMKQGVLT  RVRLL+ +G  C+                 CIV  +LSVL LVIV+KGE ++PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   +R    K GK+ +    KAPKIQRLVTP+
Sbjct:    1 MKLNVSFPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRIAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCY--RPRRDGERKRKSVRGCIVDANLSVLALVIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRLLPAKEGKENAKPRYKAPKIQRLVTPV 187          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6A_SCHPO (40S ribosomal protein S6-A OS=Schizosaccharomyces pombe GN=rps6a PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.032e-51
Identity = 110/189 (58.20%), Postives = 128/189 (67.72%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLVTPLT 673
            MK NI+ P  G QK +EI DD++LR F +KR+ QEV GD++G EF GYVFKI GG DKQGFPM QGVL P RVRLLL  G PC+                 CIV  DL+VL L I+K+GE D+PGLTD   P+  GPKRASKIR+ FNLSKEDDVR++V   R     K GKK  +KAPKIQRLVTP T
Sbjct:    1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCY--RPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRT 186          
The following BLAST results are available for this feature:
BLAST of FC931787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_CHICK1.964e-5460.2240S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]
RS6_XENLA9.747e-5459.6840S ribosomal protein S6 OS=Xenopus laevis GN=rps6... [more]
RS6_ONCMY1.663e-5359.1440S ribosomal protein S6 OS=Oncorhynchus mykiss GN... [more]
RS6_BRAFL2.836e-5358.2940S ribosomal protein S6 OS=Branchiostoma floridae... [more]
RS6_DROME1.407e-5257.9840S ribosomal protein S6 OS=Drosophila melanogaste... [more]
RS6_GLOMM3.135e-5257.9840S ribosomal protein S6 OS=Glossina morsitans mor... [more]
RS6_AEDAE6.985e-5257.4540S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 ... [more]
RS6B_SCHPO1.556e-5158.7340S ribosomal protein S6-B OS=Schizosaccharomyces ... [more]
RS6_SPOFR2.032e-5157.0740S ribosomal protein S6 OS=Spodoptera frugiperda ... [more]
RS6A_SCHPO2.032e-5158.2040S ribosomal protein S6-A OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC34201B11EF PostHarveN Citrus clementina cDNA clone C34201B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931787 ID=FC931787; Name=FC931787; organism=Citrus clementina; type=EST; length=673bp
GAAATAAGTTTTGGATCCCCCAAAACCCTAATCCTCAGAGAAGGAGTCGG
AGTAGTACTAGAGCCGAAGCGCTTCTCATCTCTTTAGCCACAGACTCTAT
CGAACAAAGATGAAGTTCAATATCGCAAATCCCACCACTGGGTGCCAGAA
GAAGCTCGAAATTGGCGATGACCAGAAACTTCGAGCATTTTTTGACAAGA
GGATCTCTCAAGAAGTCAATGGAGATGCTCTTGGCGAGGAGTTCAAGGGA
TATGTGTTCAAGATTATGGGTGGCTGCGACAAGCAAGGTTTTCCCATGAA
GCAAGGAGTGCTGACTCCCGGCCGTGTTCGTCTTCTGCTCCACCGTGGTA
CCCCTTGCTTTCGTGGGTATGGCAGGAGAGATGGAGAGCGCAGGAGGAAG
TCTGTTCGTGGATGCATAGTTAGTCCAGATCTCTCCGTGTTGAATTTGGT
CATTGTGAAAAAGGGAGAACATGACCTTCCTGGACTTACCGATACAGAAA
AGCCCAGAATGAGAGGTCCCAAGAGAGCATCGAAGATCAGGAAGTTGTTC
AACCTTTCCAAGGAGGATGATGTTAGGAAGTACGTTAACACCTATCGTAG
GACCTTCACAACAAAATCTGGTAAGAAGGTTAGCAAGGCACCGAAAATTC
AGAGGTTGGTAACTCCTTTGACT
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