FC931787

Overview
NameFC931787
Unique NameFC931787
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15088 contig Ccv1_Contig15088:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_YARLI (40S ribosomal protein S6 OS=Yarrowia lipolytica GN=RPS6 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.467e-51
Identity = 108/186 (58.06%), Postives = 130/186 (69.89%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTP 667
            MK NIA P  G QK ++I D+ ++R F++KR+ QEV  D LG+EFKGYV KI GG DKQGFPMKQGV+ P RVRLLL + + C+                 CIVS DLSVL++VIVK+G+ D+ GLT    PR  GPKRA+ IRKLF LSKEDDVR+YV   RR  TTKSGK  +KAPKIQRL+TP
Sbjct:    1 MKLNIAYPAQGTQKCIDIEDEHRVRGFYEKRMGQEVEADFLGDEFKGYVLKITGGNDKQGFPMKQGVMHPTRVRLLLSKDSSCY--RSRRAGERKRKSVRGCIVSSDLSVLSVVIVKQGDADIEGLTTETVPRRLGPKRANNIRKLFALSKEDDVRQYV--IRREVTTKSGKTYTKAPKIQRLITP 182          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_YEAST (40S ribosomal protein S6 OS=Saccharomyces cerevisiae GN=RPS6A PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.913e-51
Identity = 108/186 (58.06%), Postives = 126/186 (67.74%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTP 667
            MK NI+ P  G QK  EI D+ ++R FFDKRI QEV+G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P R++LLL +   C+                  IV PDL+VL LVIVKKGE +L GLTDT  P+  GPKRA+ IRK F LSKEDDVR +V    R   TK  K  +KAPKIQRLVTP
Sbjct:    1 MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKNVSCY--RPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFV---IRREVTKGEKTYTKAPKIQRLVTP 181          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_AEDAL (40S ribosomal protein S6 OS=Aedes albopictus GN=RpS6 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.913e-51
Identity = 108/188 (57.45%), Postives = 129/188 (68.62%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKV-SKAPKIQRLVTPL 670
            MK N++ P TG QK  E+ DD KLR F+DKR+  E+  D LG+E+KGYVFKI GG DKQGFPMKQGVLT  RVRLLL +G  C+                 CIV  +LS L L++VKKGE D+PGLTDT   R  GPKRAS IRKL+NL+KEDDVR+YV   +R    K GKK  +KAPKIQRL+TP+
Sbjct:    1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKDIPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYV--VKRPLPEKDGKKPRTKAPKIQRLITPV 184          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_MANSE (40S ribosomal protein S6 OS=Manduca sexta GN=RpS6 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.317e-50
Identity = 107/191 (56.02%), Postives = 130/191 (68.06%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS----KAPKIQRLVTPL 670
            MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+                 CIV  +LSVL LVIV+KGE ++PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   +     K GK+ +    KAPKIQRLVTP+
Sbjct:    1 MKLNVSFPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCY--RPRRDGERKRKSVRGCIVDANLSVLALVIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKALLPAKEGKENAKPRYKAPKIQRLVTPV 187          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_CAEEL (40S ribosomal protein S6 OS=Caenorhabditis elegans GN=rps-6 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.539e-50
Identity = 105/186 (56.45%), Postives = 130/186 (69.89%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTP 667
            M+ N A P TG QK  E+ +++KLR FF+KR+SQEV  DALG+E+KGYV +I GG DKQGFPMKQG+LT GRVRLLL +G  C+                 CIV  ++S L+LVIVKKG+ ++ GLTD+  PR  GPKRASKIRKLFNL+K DDV KYV T+ +TF     K +  APKIQRL+TP
Sbjct:    1 MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFPMKQGILTNGRVRLLLKKGQSCY--RERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDGVTKTI--APKIQRLITP 182          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_CANGA (40S ribosomal protein S6 OS=Candida glabrata GN=RPS6A PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.115e-49
Identity = 104/186 (55.91%), Postives = 126/186 (67.74%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTP 667
            MK NIA P  G QK +E+ D+ ++R F+DKRI QE+ G+A+G+EFKGY FKI GG DKQGFPMKQGVL P RV+LLL +G  C+                  IV PDL+VL+LVIVKKGE +L G+TD   P+  GPKRA+ IRK F L+KEDDVR +V    R   TK  K  +KAPKIQRLVTP
Sbjct:    1 MKLNIAYPVNGTQKTVEVDDEHRVRVFYDKRIGQEIEGEAVGDEFKGYTFKITGGNDKQGFPMKQGVLLPTRVKLLLAKGHSCY--RPRRSGERKRKSVRGAIVGPDLAVLSLVIVKKGEQELEGVTDATVPKRLGPKRANHIRKFFGLTKEDDVRDFV---IRREVTKGEKTYTKAPKIQRLVTP 181          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_KLUMA (40S ribosomal protein S6 OS=Kluyveromyces marxianus GN=RPS6 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.484e-49
Identity = 104/186 (55.91%), Postives = 128/186 (68.82%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTP 667
            MK NI+ P  G QK +EI D+ ++R F+DKRI QEV+G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LL+ +GT C+                  IV PDL+VL LVIVKKG+ ++ G+T+   P+  GPKRA+ IRK F L+KEDDVR YV    R   TK  K  +KAPKIQRLVTP
Sbjct:    1 MKLNISYPINGTQKCVEIDDEHRVRVFYDKRIGQEVDGEAVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLMAKGTSCY--RPRRNGERKRKSVRGAIVGPDLAVLALVIVKKGDQEIEGVTNETVPKRLGPKRANNIRKFFGLTKEDDVRDYV---IRREVTKGEKTYTKAPKIQRLVTP 181          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_DEBHA (40S ribosomal protein S6 OS=Debaryomyces hansenii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.228e-49
Identity = 101/188 (53.72%), Postives = 128/188 (68.09%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLT 673
            MK NI+ P  G QK ++I D+ KLR F++KR+ QEV GD +G+EFKGY+F+I GG DKQGFPMKQGV+ P RV+LLL +G  C+                 CIV+ DL+VL L +VK+G+ D+ GLTDT  P+  GPKRA+ IRK F L+KEDDVR++V    R    K  KK +KAPKIQRLVTP T
Sbjct:    1 MKLNISYPANGTQKCIDIEDEHKLRVFYEKRMGQEVEGDTVGDEFKGYIFRITGGNDKQGFPMKQGVMHPTRVKLLLAKGHSCY--RPRRTGERKRKSVRGCIVAQDLAVLALSVVKQGDSDIEGLTDTTTPKRLGPKRANNIRKFFGLTKEDDVRQFV---VRREVVKGDKKYTKAPKIQRLVTPQT 183          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_KLULA (40S ribosomal protein S6 OS=Kluyveromyces lactis GN=RPS6 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.233e-48
Identity = 102/186 (54.84%), Postives = 126/186 (67.74%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTP 667
            MK NI+ P  G QK +EI D+ ++R F+DKRI QEV+G+++G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LLL +G  C+                  IV PDL+VL L+I KKGE ++ G+T+   P+  GPKRA+ IRK F L+KEDDVR YV    R   TK  K  +KAPKIQRLVTP
Sbjct:    1 MKLNISYPINGTQKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLLAKGHSCY--RPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIEGITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYV---IRREVTKGDKSYTKAPKIQRLVTP 181          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.233e-48
Identity = 99/186 (53.23%), Postives = 126/186 (67.74%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTP 667
            MK NI+ P  G QK +E+ D+ ++R F+DKRI QEVNG+A+G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LL+ +GT C+                  IV PDL+VL L+I KKG+ ++ G+T+   P+  GPKRA+ IRK F L+K+DDVR +V    R    K  K  +KAPKIQRLVTP
Sbjct:    1 MKLNISYPVNGTQKTIEVDDEHRVRVFYDKRIGQEVNGEAVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLMAKGTSCY--RPRRNGERKRKSVRGAIVGPDLAVLALIITKKGDQEIEGITNESVPKRLGPKRANNIRKFFGLTKDDDVRDFV---IRREVVKGDKTYTKAPKIQRLVTP 181          
The following BLAST results are available for this feature:
BLAST of FC931787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_YARLI3.467e-5158.0640S ribosomal protein S6 OS=Yarrowia lipolytica GN... [more]
RS6_YEAST5.913e-5158.0640S ribosomal protein S6 OS=Saccharomyces cerevisi... [more]
RS6_AEDAL5.913e-5157.4540S ribosomal protein S6 OS=Aedes albopictus GN=Rp... [more]
RS6_MANSE1.317e-5056.0240S ribosomal protein S6 OS=Manduca sexta GN=RpS6 ... [more]
RS6_CAEEL8.539e-5056.4540S ribosomal protein S6 OS=Caenorhabditis elegans... [more]
RS6_CANGA1.115e-4955.9140S ribosomal protein S6 OS=Candida glabrata GN=RP... [more]
RS6_KLUMA2.484e-4955.9140S ribosomal protein S6 OS=Kluyveromyces marxianu... [more]
RS6_DEBHA7.228e-4953.7240S ribosomal protein S6 OS=Debaryomyces hansenii ... [more]
RS6_KLULA1.233e-4854.8440S ribosomal protein S6 OS=Kluyveromyces lactis G... [more]
RS6_ASHGO1.233e-4853.2340S ribosomal protein S6 OS=Ashbya gossypii GN=RPS... [more]

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Properties
Property NameValue
Genbank descriptionC34201B11EF PostHarveN Citrus clementina cDNA clone C34201B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931787 ID=FC931787; Name=FC931787; organism=Citrus clementina; type=EST; length=673bp
GAAATAAGTTTTGGATCCCCCAAAACCCTAATCCTCAGAGAAGGAGTCGG
AGTAGTACTAGAGCCGAAGCGCTTCTCATCTCTTTAGCCACAGACTCTAT
CGAACAAAGATGAAGTTCAATATCGCAAATCCCACCACTGGGTGCCAGAA
GAAGCTCGAAATTGGCGATGACCAGAAACTTCGAGCATTTTTTGACAAGA
GGATCTCTCAAGAAGTCAATGGAGATGCTCTTGGCGAGGAGTTCAAGGGA
TATGTGTTCAAGATTATGGGTGGCTGCGACAAGCAAGGTTTTCCCATGAA
GCAAGGAGTGCTGACTCCCGGCCGTGTTCGTCTTCTGCTCCACCGTGGTA
CCCCTTGCTTTCGTGGGTATGGCAGGAGAGATGGAGAGCGCAGGAGGAAG
TCTGTTCGTGGATGCATAGTTAGTCCAGATCTCTCCGTGTTGAATTTGGT
CATTGTGAAAAAGGGAGAACATGACCTTCCTGGACTTACCGATACAGAAA
AGCCCAGAATGAGAGGTCCCAAGAGAGCATCGAAGATCAGGAAGTTGTTC
AACCTTTCCAAGGAGGATGATGTTAGGAAGTACGTTAACACCTATCGTAG
GACCTTCACAACAAAATCTGGTAAGAAGGTTAGCAAGGCACCGAAAATTC
AGAGGTTGGTAACTCCTTTGACT
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