FC931787

Overview
NameFC931787
Unique NameFC931787
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15088 contig Ccv1_Contig15088:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 2.747e-48
Identity = 104/143 (72.73%), Postives = 109/143 (76.22%), Query Frame = 2
Query:  245 KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLT 673
            KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLL+RGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGP+   +   L+   KEDDVRKYVNT    FTTK   K SKAPKIQRLVTPLT
Sbjct:    1 KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNT-TAEFTTK--WKGSKAPKIQRLVTPLT 138          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_DICDI (40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.727e-46
Identity = 102/188 (54.26%), Postives = 119/188 (63.30%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLT 673
            MK NIA P  G QKK+ I D  K+R F +KRI QEV    LG+EFKGYVFKI GG D +GFPM QGV  P RVRLLL   + CF                 CIV+ D++ L L+IVKKG+ ++PGLTD   P  +GPKRAS IRKLF LSK++DVR +V   R    T   K  SKAPKIQRLVTP T
Sbjct:    1 MKLNIAYPVNGSQKKINIEDKNKVRCFMEKRIGQEVEATTLGDEFKGYVFKITGGNDTEGFPMMQGVGAPTRVRLLLDGRSGCF--KPSRDGERKRKSVRGCIVAEDIASLQLIIVKKGDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFV-IRRELPATDKRKAKSKAPKIQRLVTPTT 185          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_LEIMA (40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.781e-39
Identity = 91/188 (48.40%), Postives = 113/188 (60.11%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFF-DKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLVTP 667
            MK NIA P  G  K+ EI D+   R    D R+  EV+G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     KSGKK   KAPKIQRL+TP
Sbjct:    1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITP 185          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.395e-38
Identity = 90/188 (47.87%), Postives = 112/188 (59.57%), Query Frame = 2
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFF-DKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLVTP 667
            M  NIA P  G  K+ EI D+   R    D R+  EV+G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     KSGKK   KAPKIQRL+TP
Sbjct:    1 MYLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITP 185          
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_ENCCU (40S ribosomal protein S6 OS=Encephalitozoon cuniculi GN=RPS6 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.277e-17
Identity = 55/154 (35.71%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  191 FDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQ 652
            +DK+I  + +G  LGEEF+G + +I GG D QGFPM  G LT  RVR LL +G   +                  IVS ++ VLNL+I++ GE ++ GLT+        P++  K+RK+F +  E+   K V  Y R           K PKI+
Sbjct:   13 YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVRPLLSKGDAGY--RCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHLPRKEKKLRKMFGVPDEE---KNVVGYIRNILKSECDDPKKIPKIR 161          
The following BLAST results are available for this feature:
BLAST of FC931787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_TOBAC2.747e-4872.7340S ribosomal protein S6 (Fragment) OS=Nicotiana t... [more]
RS6_DICDI5.727e-4654.2640S ribosomal protein S6 OS=Dictyostelium discoide... [more]
RS6_LEIMA6.781e-3948.4040S ribosomal protein S6 OS=Leishmania major GN=RP... [more]
RS6_LEIIN4.395e-3847.8740S ribosomal protein S6 OS=Leishmania infantum GN... [more]
RS6_ENCCU4.277e-1735.7140S ribosomal protein S6 OS=Encephalitozoon cunicu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34201B11EF PostHarveN Citrus clementina cDNA clone C34201B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931787 ID=FC931787; Name=FC931787; organism=Citrus clementina; type=EST; length=673bp
GAAATAAGTTTTGGATCCCCCAAAACCCTAATCCTCAGAGAAGGAGTCGG
AGTAGTACTAGAGCCGAAGCGCTTCTCATCTCTTTAGCCACAGACTCTAT
CGAACAAAGATGAAGTTCAATATCGCAAATCCCACCACTGGGTGCCAGAA
GAAGCTCGAAATTGGCGATGACCAGAAACTTCGAGCATTTTTTGACAAGA
GGATCTCTCAAGAAGTCAATGGAGATGCTCTTGGCGAGGAGTTCAAGGGA
TATGTGTTCAAGATTATGGGTGGCTGCGACAAGCAAGGTTTTCCCATGAA
GCAAGGAGTGCTGACTCCCGGCCGTGTTCGTCTTCTGCTCCACCGTGGTA
CCCCTTGCTTTCGTGGGTATGGCAGGAGAGATGGAGAGCGCAGGAGGAAG
TCTGTTCGTGGATGCATAGTTAGTCCAGATCTCTCCGTGTTGAATTTGGT
CATTGTGAAAAAGGGAGAACATGACCTTCCTGGACTTACCGATACAGAAA
AGCCCAGAATGAGAGGTCCCAAGAGAGCATCGAAGATCAGGAAGTTGTTC
AACCTTTCCAAGGAGGATGATGTTAGGAAGTACGTTAACACCTATCGTAG
GACCTTCACAACAAAATCTGGTAAGAAGGTTAGCAAGGCACCGAAAATTC
AGAGGTTGGTAACTCCTTTGACT
back to top