FC931790

Overview
NameFC931790
Unique NameFC931790
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_PYRFU (50S ribosomal protein L19e OS=Pyrococcus furiosus GN=rpl19e PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 50/138 (36.23%), Postives = 80/138 (57.97%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRAL 458
            M  L  Q+R+AA ++ CG+ +IW+DP  ++++++A +R+ I++L+ +G+I +KP+   SR  A+  +E ++ GRHRG G RKG K ARM  +                  A  KID+  Y  LY  +KG  FK+K  L
Sbjct:    1 MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQL 138          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_PYRAB (50S ribosomal protein L19e OS=Pyrococcus abyssi GN=rpl19e PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 52/144 (36.11%), Postives = 81/144 (56.25%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQK 476
            M  L  Q+R+AA ++ CG+ +IW+DP  ++++++A +R+ IR+L+ +G+I +KPV   SR  AR  +E ++ GRHRG G RKG K ARM  +                     KID+  Y  LY  +KG  FK K  L   +++
Sbjct:    1 MKTLKMQRRVAAELLKCGENRIWIDPERVDDVASAITREDIRRLIKEGVIKKKPVKGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKEQKKIDRRTYRMLYIRAKGGQFKSKHQLYMFLEE 144          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_METJA (50S ribosomal protein L19e OS=Methanocaldococcus jannaschii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18
Identity = 43/144 (29.86%), Postives = 81/144 (56.25%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQK 476
            +++++ Q+R+AA ++ CG  ++W+DP +++ +  A S+  IR L+ +G+I +K     S A  ++L E R+ GR RG G R+G   AR P +                   +GKID+ +Y +LY ++KG  F+ +  L  ++++
Sbjct:    3 IMDVSVQRRMAAEILKCGIERVWIDPTQLDRVKMAMSKDDIRALIKEGVIKKKQKKGISSARVKKLKEQRKKGRRRGPGSRRGAAGARTPPKERWMATIRALRKTLKQLRDSGKIDRKVYRKLYRMAKGGAFRSRSHLFLYMRE 146          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_METTH (50S ribosomal protein L19e OS=Methanobacterium thermoautotrophicum GN=rpl19e PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 47/134 (35.07%), Postives = 73/134 (54.48%), Query Frame = 3
Query:   48 VNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHK 449
            +NLTTQKRLAA ++  G  +IW+DP  ++E+S A +R  +++L+ DG I  KP    S   ++++ + ++ GR RG G  KG K AR P +                     +I+K  Y +LY ++KG  FK K
Sbjct:    1 MNLTTQKRLAADILKVGVNRIWIDPERIDEVSRAITRDGVKQLIKDGAIKAKPKKGISSYRSKKIAQQKKKGRRRGPGSIKGAKGARRPKKDEWMTTIRALRKDLKEMRDNREINKSTYRKLYKMAKGGAFKSK 134          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_METVA (50S ribosomal protein L19e OS=Methanococcus vannielii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17
Identity = 41/134 (30.60%), Postives = 76/134 (56.72%), Query Frame = 3
Query:   48 VNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHK 449
            ++++TQ+R+AA+V+ CG  ++W+DP  + ++  A ++  IR L++DG+I++K     S A  +E+ E +R G+ +G G R+G K AR P +                     KI++  Y +LY ++KG  F+ +
Sbjct:    1 MDVSTQRRIAAAVLDCGIDRVWVDPENLEKVKMAITKDDIRLLINDGIIVKKQEKGISSARKKEVQEQKRKGKRKGPGSRRGAKGARTPKKEKWMNTIRPLRTLLKELRENEKIERSSYRKLYRMAKGGAFRSR 134          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_MAIZE (60S ribosomal protein L19 (Fragment) OS=Zea mays GN=RPL19 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.994e-16
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 3
Query:   54 LTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARE 239
            L  QKRLAAS + CGK K+WLDPNE++EIS ANSRQ IRKLV DG II+KP  +HSR+  ++
Sbjct:    1 LKLQKRLAASYLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIKKPHKIHSRSRCKK 62          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19E_HALSA (50S ribosomal protein L19e OS=Halobacterium salinarium GN=rpl19e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.044e-15
Identity = 45/144 (31.25%), Postives = 73/144 (50.69%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQK 476
            M +L+ QKRLAA V+  G+ ++W DP+  +EI++A +R+ IR+LV+DG I  +    +SR  ARE +     G  +G G RKG   AR   +                    G +    Y E+Y+++ G  F   R L  ++++
Sbjct:    1 MSDLSAQKRLAADVLDVGENRVWFDPDAQSEIADAITREDIRELVADGTIDAEDTQGNSRGRARERDAKESYGHKKGAGSRKGKAGARQNEKREYVAGIRAQRQQLRELRDDGTLSPAQYREMYNMANGGEFDSVRRLTNYVEE 144          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_HALMA (50S ribosomal protein L19e OS=Haloarcula marismortui GN=rpl19e PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 45/142 (31.69%), Postives = 67/142 (47.18%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHI 470
            M +L+ QKRLAA V+  GK ++W +P    +I++A +R+ +R+LV +G I  K    +SR  ARE  + R  G  +G G RKG   AR  S+                    G +    Y +LY  + G  F     L  +I
Sbjct:    1 MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYI 142          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_AERPE (50S ribosomal protein L19e OS=Aeropyrum pernix GN=rpl19e PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 42/138 (30.43%), Postives = 69/138 (50.00%), Query Frame = 3
Query:   63 QKRLAASVVGCGKRKIWL--DPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHI 470
            Q+RLAA ++G G+ +IW+  DP    EI  A ++  +R L+  G+I   P   ++  +++  +  RR GR RG+G+RKG   AR+  +                      ID+  Y  LY L+KG TF+   +L  ++
Sbjct:    6 QRRLAAEILGVGESRIWISPDPELREEIEGAVTKADVRALIKRGVIKVLPEKGNAGHASKVRHLQRRKGRRRGMGRRKGVATARLDPKERWMHRIRKIRRYLRYLRDKQVIDRKTYRRLYMLAKGGTFRDLASLKRYM 143          
The following BLAST results are available for this feature:
BLAST of FC931790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RL19_PYRFU3.705e-2136.2350S ribosomal protein L19e OS=Pyrococcus furiosus ... [more]
RL19_PYRAB3.705e-2136.1150S ribosomal protein L19e OS=Pyrococcus abyssi GN... [more]
RL19_METJA1.318e-1829.8650S ribosomal protein L19e OS=Methanocaldococcus j... [more]
RL19_METTH5.007e-1835.0750S ribosomal protein L19e OS=Methanobacterium the... [more]
RL19_METVA1.457e-1730.6050S ribosomal protein L19e OS=Methanococcus vannie... [more]
RL19_MAIZE7.994e-1664.5260S ribosomal protein L19 (Fragment) OS=Zea mays G... [more]
RL19E_HALSA1.044e-1531.2550S ribosomal protein L19e OS=Halobacterium salina... [more]
RL19_HALMA3.358e-1431.6950S ribosomal protein L19e OS=Haloarcula marismort... [more]
RL19_AERPE4.105e-1230.4350S ribosomal protein L19e OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34201C02EF PostHarveN Citrus clementina cDNA clone C34201C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931790 ID=FC931790; Name=FC931790; organism=Citrus clementina; type=EST; length=673bp
GACGAACATCATCCGCCAACGACCGTCGATACGCCGACATCAAGATGGTC
AACCTTACCACCCAGAAGCGCCTCGCCGCCTCCGTGGTCGGCTGCGGCAA
GCGCAAGATTTGGCTCGACCCCAATGAGATGAACGAGATCTCCAACGCCA
ACTCTCGCCAGACCATCCGCAAGCTCGTCAGCGATGGCCTCATCATCCGC
AAGCCCGTCACCATGCACTCCCGTGCCAGCGCCCGCGAGCTCAACGAGGC
CCGCCGAAACGGCCGTCACCGCGGTCTGGGTAAGCGCAAGGGTACCAAGG
ATGCCCGTATGCCCAGTCAAGTTCTTTGGATGCGCCGCATGCGTGTTCTC
CGCCGTCTGCTCGTCCGCTACCGTGCCGCTGGCAAGATCGACAAGCACCT
CTACCACGAGCTTTACCACCTGAGCAAGGGTAACACCTTCAAGCACAAGC
GTGCCCTCGTTGAGCACATCCAGAAGGCTAAGGCTGAGCGTGCACGCGAC
CGTGTCCTTAAGGAGGAGATGGATGCTAAGCGTGCCAAGAACAAGGCTCT
CCGTGAGCGCCGGTTGGAGCGCAAGGAGGCCAAGCGCGATGCTCTGATCG
GCGAGGAGTAAATCTGATACAAAAATTCAATTACCCTTCCGTTGTTTGAC
GATTTCCTTTGCATTCGGCGGTC
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