FC931792

Overview
NameFC931792
Unique NameFC931792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: TERPD_PSESP (Probable alcohol dehydrogenase OS=Pseudomonas sp. GN=terPD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 53/157 (33.76%), Postives = 76/157 (48.41%), Query Frame = 3
Query:  180 VKMLYAS---VCHTDILCSEG-FPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPI------ALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASF---LSCEFTTGYGA 611
            +K L+ S   VCHTD+   +G  P PL P VLGHEG G+VE+ G  VK +K GD V+ T+   C  C +C  E  + CL +          +G +L S     + G      F  S++S   +   + +VK+D  +D +       L C   TG GA
Sbjct:    7 MKCLFVSESCVCHTDLAIKDGVLPFPL-PAVLGHEGSGIVEAVGPGVKHLKPGDAVVMTF-ASCGHCASCEHERPSYCLDFGAQNYSAQRADGPVLLSQGDEVISG----FFFGQSSFSSMAMAREHNLVKIDALVDDAPIELLGPLGCGVQTGAGA 157          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CADH_MAIZE (Probable cinnamyl alcohol dehydrogenase OS=Zea mays GN=CAD PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 47/147 (31.97%), Postives = 68/147 (46.26%), Query Frame = 3
Query:  171 EVRVKMLYASVCHTDILCSEG-FPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            +V VK+LY  +CHTDI  ++    A  YP V GHE VG V   G EV +   GD+V +   +G C+EC  C + +   C K   + N +  D                    ++  MV+D  +VVK+   + P  A+ L C   T Y
Sbjct:   36 DVVVKVLYCGICHTDIHQAKNHLGASKYPMVPGHEVVGEVVEVGPEVAKYGVGDVVGVGVIVGCCRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQ-------------GGFASTMVVDQKFVVKIPAGLAPEQAAPLLCAGVTVY 169          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 41/147 (27.89%), Postives = 73/147 (49.66%), Query Frame = 3
Query:  171 EVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            +V+ ++LY  VCH+D+ +    +    YP V GHE VG+V   G +V++VK GD V +   +G C++C+ C++++ N C K  +      LD T              +   +S+ MV D +++++   +      + L C   T Y
Sbjct:   39 DVQFRVLYCGVCHSDLHMVKNEWGVTHYPIVPGHEIVGIVTEVGSKVEKVKIGDKVGVGVLVGSCRQCDQCSNDLENYCYKQILTYGAPYLDGT-------------IARGGYSDIMVADEHFIIRWPENFPLDAGAPLLCAGITTY 172          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CADH1_ARACO (Probable cinnamyl alcohol dehydrogenase 1 OS=Aralia cordata GN=CAD1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 47/147 (31.97%), Postives = 67/147 (45.58%), Query Frame = 3
Query:  171 EVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            +V +K++Y  +CHTDI        A  YP V GHE VG V   G +V + K GD V   T +G CK C  C +++   C K   + N +  D                    +S +MV+D  +VVK+   + P  A+ L C   T Y
Sbjct:   36 DVFIKIIYCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVEVGSDVTKFKVGDCVGDGTIVGCCKTCRPCKADVEQYCNKKIWSYNDVYTDGKPTQ-------------GGFSGHMVVDQKFVVKIPDGMAPEQAAPLLCAGVTVY 169          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CADH_SACOF (Probable cinnamyl alcohol dehydrogenase OS=Saccharum officinarum GN=CAD PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 46/147 (31.29%), Postives = 69/147 (46.94%), Query Frame = 3
Query:  171 EVRVKMLYASVCHTDILCSEG-FPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            +V VK+LY  +CHTDI  ++    A  YP V GHE VG V   G EV +   GD+V +   +G C+EC+ C + +   C K   + N +  D                    ++  MV+D  +V+K+   + P  A+ L C   T Y
Sbjct:   36 DVVVKVLYCGICHTDIHQAKNHLGASKYPMVPGHEVVGEVVEVGPEVTKYGVGDVVGVGVIVGCCRECKPCKANVEQYCNKKIWSYNDVYTDGRPTQ-------------GGFASTMVVDQKFVMKIPAGLAPEQAAPLLCAGVTVY 169          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 43/147 (29.25%), Postives = 67/147 (45.58%), Query Frame = 3
Query:  171 EVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            +V VK+L+  VCHTD+      +    YP V GHE VG+    G  V + KEGD V +    G C+ CE+C  ++ N C +     N +  D T              +   +SE +V+D  +V++   ++     + L C   T Y
Sbjct:   39 DVTVKILFCGVCHTDLHTIKNDWGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQMSFTYNAIGSDGTK-------------NYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVY 172          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 47/149 (31.54%), Postives = 69/149 (46.31%), Query Frame = 3
Query:  171 EVRVKMLYASVCHTDILCSE---GFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            +V VK+L+  VCH+D+   +   GF    YP + GHE VG+    G  V + KEGD V +   IG C+ CE+C  ++ N C K     N    D T     R Q  Y        S+ +V+D  +V+ +   +     + L C   T Y
Sbjct:   33 DVTVKILFCGVCHSDLHTIKNHWGFSR--YPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGT-----RNQGGY--------SDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVY 166          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CADH_LOLPR (Probable cinnamyl alcohol dehydrogenase OS=Lolium perenne PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 47/147 (31.97%), Postives = 71/147 (48.30%), Query Frame = 3
Query:  171 EVRVKMLYASVCHTDILCSEG-FPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            +V +K+LY  +CHTD+  ++    A  YP V GHE VG V   G EV +   GD+V +   +G C++C  C + +   C K   + N +  D        G+     F+ S     MV+D  +VVK+   + P  A+ L C   T Y
Sbjct:   37 DVVLKVLYCGICHTDLHQTKNHLGASKYPMVPGHEVVGEVVEVGPEVSKYSVGDVVGVGVIVGCCRDCRPCKANVEQYCNKKIWSYNDVYTD--------GKPTQGGFAGS-----MVVDQKFVVKIPAGLAPEQAAPLLCAGVTVY 170          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 44/150 (29.33%), Postives = 70/150 (46.67%), Query Frame = 3
Query:  162 KSTEVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            K  +V +K+LY  +CHTD+ +    +   +YP V GHE VGVV   G  V + K GD V +  ++G C+ C++C     N C    I  NG      +                 +S+ +V++ +YV++V   +    A+ L C   T Y
Sbjct:  106 KDDDVTIKVLYCGICHTDLHVVKNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGFFVGSCRTCDSCGKGYENYCPTMVITSNGKDYGGAATQ-------------GGFSDAIVVNEHYVLRVPAGLPLDGAAPLLCAGVTVY 242          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 45/147 (30.61%), Postives = 67/147 (45.58%), Query Frame = 3
Query:  171 EVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            +V +K+LY  +CHTD+      +   +YP V GHE VGVV   G  V   K GD V +  ++  C+ C++C     N C    I  NG      +                 +S+ MV+  +YV++V  S+ P  A+ L C   T Y
Sbjct:   34 DVTIKVLYCGICHTDLHTIKNEWGNAMYPVVPGHEIVGVVAGVGAGVTRFKAGDTVGVGYFVDSCRACDSCGKGDENYCPTMVITSNGTDYGGATTQ-------------GGFSDVMVVRQDYVLRVPASLPPDGAAPLLCAGVTVY 167          
The following BLAST results are available for this feature:
BLAST of FC931792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
TERPD_PSESP2.648e-1233.76Probable alcohol dehydrogenase OS=Pseudomonas sp. ... [more]
CADH_MAIZE2.648e-1231.97Probable cinnamyl alcohol dehydrogenase OS=Zea may... [more]
GEDH1_OCIBA3.458e-1227.89Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
CADH1_ARACO3.458e-1231.97Probable cinnamyl alcohol dehydrogenase 1 OS=Arali... [more]
CADH_SACOF4.516e-1231.29Probable cinnamyl alcohol dehydrogenase OS=Sacchar... [more]
CADH9_ARATH7.703e-1229.25Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
CADH3_ARATH7.703e-1231.54Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
CADH_LOLPR1.006e-1131.97Probable cinnamyl alcohol dehydrogenase OS=Lolium ... [more]
CAD8B_ORYSJ1.006e-1129.33Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
CAD8A_ORYSJ1.006e-1130.61Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC34201C04EF PostHarveN Citrus clementina cDNA clone C34201C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931792 ID=FC931792; Name=FC931792; organism=Citrus clementina; type=EST; length=704bp
GATGCAGAGCTCATCTCCTTATCGACAGTTTGAAATTCGAGGCTGCAAAA
TCTACAGCAATACTAACAATGAGCAATTCACAAGCCATAACGTGCAAAGC
TGTGGTATGTTGGGGTTTAGGAGAGCCATTAAAGGTAGAGGAGATACAAG
TAGAGCCTCCGAAATCAACTGAAGTTAGGGTTAAGATGCTTTATGCCAGT
GTTTGTCACACTGATATCCTTTGCTCTGAAGGATTCCCAGCGCCTCTTTA
TCCTCGTGTTCTCGGGCACGAAGGTGTCGGGGTGGTGGAGAGTGCTGGGG
ATGAAGTGAAAGAAGTGAAAGAAGGAGATATTGTGATTCCAACTTATATT
GGAGAATGTAAAGAATGTGAAAATTGCACATCAGAAATGACCAATTTATG
CCTAAAATATCCAATAGCACTGAACGGTTTAATGCTTGATAGCACTTCAA
GAATGTCCGTAAGAGGCCAAAAATTGTATCACATTTTTTCATGCTCCACT
TGGTCTGAATATATGGTCATCGATGCCAATTATGTAGTCAAAGTTGATCC
AAGCATTGATCCCTCGGATGCTAGCTTCCTTTCATGTGAATTTACAACTG
GTTATGGGGCGGCTTGGAAGGAAGCCAAAGTTGAAAAAGGATCTAGTGTT
GCTGTTTTAGGGCTTGGTACTGTTGGATTAGGGGCTGTTGATGGAGCCAG
GATG
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