FC931799

Overview
NameFC931799
Unique NameFC931799
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_HALMA (30S ribosomal protein S3P OS=Haloarcula marismortui GN=rps3p PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.862e-25
Identity = 59/183 (32.24%), Postives = 110/183 (60.11%), Query Frame = 3
Query:  120 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            ++ +++F+ DG+   +++E    EL   GY G++V  TPM T+I+++A +   V+G+ G+ IR++T+ ++ RF   +  V++  ++V+   L A   A+ L   L  G   R+A +  +  IMESGA G E+++SGK+   R++  KF  GY+  +G+P  E +DS V   +++ G +G+R +
Sbjct:    1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGVRVK 181          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METHJ (30S ribosomal protein S3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps3p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25
Identity = 67/180 (37.22%), Postives = 100/180 (55.56%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            +RKFVADGV    +   L  EL   GY G+++  TP+ T++ I A +   V+G+ G+ +R LT  +   +      +E+  ++V+N  L A   AE L   L  G   R+A    LR IM+SGA GCEV++SGKL   R +  KF +GY+  SG PVN  +D      + + GV+G++ R
Sbjct:    4 ERKFVADGVRKVRVERHLGHELKRAGYGGMDLIRTPLGTQVTIFAEKPGIVIGKGGKVVRTLTQDLATTYGVESPQIEV--QQVDNPNLNAQIMAERLASALERGWYFRKAGSSTLRRIMDSGALGCEVVISGKLTGARGRVQKFTEGYIKHSGDPVNTLVDKGYAVAIKKLGVIGVQVR 181          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METLZ (30S ribosomal protein S3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps3p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.848e-24
Identity = 62/180 (34.44%), Postives = 104/180 (57.78%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            ++KFVADGV    + + L +EL   GY G+++  TP+ T++ I A +   V+G+ G+ +R+LT+ +   +      VE+  ++V N  L A   AE L   L  G   R+A   V+R +M+SGA GCEVI++GKL   RA+  KF +GY+  SG+P    ++      + + G++G++ +
Sbjct:    4 EKKFVADGVRKVRVEQYLNKELKRAGYGGMDIVRTPVGTQVTIFAEKPGIVIGKGGKLVRQLTTDLSTVYGIESPQVEV--QQVANPNLNAQIMAERLANALERGWYFRKAGTSVIRRVMDSGALGCEVIIAGKLTGARARVQKFVEGYIKHSGEPSESIVEKGYATAIKKLGIIGVQVK 181          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_NATPD (30S ribosomal protein S3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps3p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.413e-24
Identity = 58/183 (31.69%), Postives = 110/183 (60.11%), Query Frame = 3
Query:  120 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            ++ + +F+ DG+   +++E  + EL+  GY G+EV  TPM T+I+++A +   V+G+ G+ IR++T+ +++ F   +  V++  ++V+   L A   A+ L   L  G   R+A +  +  IMESGA G E+I+SGK+   R++  KF  GY+  +G+P    +DS V   +++ G +G++ +
Sbjct:    1 MADEHQFIHDGLQRTQIDEFFSEELSRAGYGGMEVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTTLEEEFGLEDPQVDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIILSGKVTGARSRVEKFNRGYIKHNGEPAESIVDSGVGTAVMKLGTIGVQVK 181          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METTH (30S ribosomal protein S3P OS=Methanobacterium thermoautotrophicum GN=rps3p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.116e-24
Identity = 61/180 (33.89%), Postives = 101/180 (56.11%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            ++ FV +G+    ++E L +EL   GY G++V+VTPM T +++ A R   V+G  G+ +R +T  ++ +F      VE+  ++V+   L     A  +   L  G+  RR  Y  +R IM +GA+G EV +SGK+R  R+ + KF DGY+   G+P  +++      V L+ GVLG+  R
Sbjct:    3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVR 180          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METJA (30S ribosomal protein S3P OS=Methanocaldococcus jannaschii GN=rps3p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.116e-24
Identity = 65/177 (36.72%), Postives = 100/177 (56.50%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            +R FV + V    ++E   +EL++ GYS  ++R TP+ T+III A +   V+G +G RIRELT  + K F   +  +++  + V N  L A   A+ +   L  GL  RR  +  +R +M +GAKG  VI+SGKL  +RA++ KF  GYM   G+P  E +D        + GV+G+
Sbjct:    3 ERTFVKENVKRLLIDEYFKKELSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIRELTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVMNAGAKGVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKPGVIGV 177          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METMJ (30S ribosomal protein S3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 60/180 (33.33%), Postives = 101/180 (56.11%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            ++KF+ DGV    + + LT+EL   GY G+++  TP+ T++ I A +   V+G+ G+++R+LT  +   +      VE+  ++V N    A   AE L   L  G   R+A    +R IMESGA GCEVIV+GKL   R+++ KF +GY+   G+P    ++      + + G +G++ +
Sbjct:    4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVRQLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVK 181          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METB6 (30S ribosomal protein S3P OS=Methanoregula boonei (strain 6A8) GN=rps3p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 57/180 (31.67%), Postives = 104/180 (57.78%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            +RKF+A+G   A + + LT+EL   G+ G+++  TP+ T++ I A +   V+G+ G+ + +LT  + + +      +E+  ++V N    A   AE L   L  G   R+A   ++R +M+SGA GCEV+++GKL   RA++ KF +GY+   G+P N  ++      + + GV+G++ +
Sbjct:    4 ERKFIAEGARKARVEKYLTKELKRAGFGGMDIARTPLGTQVTIFAEKPGIVIGKGGKLVHQLTQDLAQNYGVESPQIEV--QQVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVMDSGALGCEVVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVEKGYAIAIKKLGVIGVQVK 181          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METTP (30S ribosomal protein S3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps3p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23
Identity = 62/180 (34.44%), Postives = 102/180 (56.67%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            ++KFV +G   A ++E L +EL   GY G+ +  TPM T+I + A +   V+G+ G+ IR+LT  +++RF+     +++  + V    L A   A  L   L  G   R+A   +LR +M+SGA GCE+++SGKL   R++  KF  GY+  SG+P  E +D+     + + G +G + R
Sbjct:    4 EKKFVQEGFTKALVDEYLAKELDRAGYGGMVMNRTPMGTQITVYAEKPGMVIGKGGKLIRKLTRDLERRFRLDNPQIDV--QDVGKSDLNARVVANRLASSLEHGWYFRKAGQSMLRRVMDSGALGCEIVISGKLTGPRSRVEKFLAGYIKHSGKPAEEIVDTGYAVAVKKLGAIGCQVR 181          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23
Identity = 62/180 (34.44%), Postives = 98/180 (54.44%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            ++KFV +G   A ++E    +L   GY G+E+  TPM T+I ++A +   ++G+ G+ IR  T  +  RFK     +++  ++V    L A   A  L   L  G   R+A    L+ IM+SGA GCEVI++GKL   R +  KF  GY+   G+PV E +D    R   + G++G++ R
Sbjct:    4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIRRYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVDVGYARAKKKLGIIGVKVR 181          
The following BLAST results are available for this feature:
BLAST of FC931799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_HALMA4.862e-2532.2430S ribosomal protein S3P OS=Haloarcula marismortu... [more]
RS3_METHJ6.350e-2537.2230S ribosomal protein S3P OS=Methanospirillum hung... [more]
RS3_METLZ1.848e-2434.4430S ribosomal protein S3P OS=Methanocorpusculum la... [more]
RS3_NATPD2.413e-2431.6930S ribosomal protein S3P OS=Natronomonas pharaoni... [more]
RS3_METTH4.116e-2433.8930S ribosomal protein S3P OS=Methanobacterium ther... [more]
RS3_METJA4.116e-2436.7230S ribosomal protein S3P OS=Methanocaldococcus ja... [more]
RS3_METMJ5.375e-2433.3330S ribosomal protein S3P OS=Methanoculleus marisn... [more]
RS3_METB65.375e-2431.6730S ribosomal protein S3P OS=Methanoregula boonei ... [more]
RS3_METTP1.198e-2334.4430S ribosomal protein S3P OS=Methanosaeta thermoph... [more]
RS3_UNCMA1.564e-2334.4430S ribosomal protein S3P OS=Uncultured methanogen... [more]

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Properties
Property NameValue
Genbank descriptionC34201C11EF PostHarveN Citrus clementina cDNA clone C34201C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931799 ID=FC931799; Name=FC931799; organism=Citrus clementina; type=EST; length=726bp
GCTTCTAACACTAAACCTAGGGTTTGCAGAGAGCTAGCTGCGCACACAAG
CCACCTCATTGAGATCATCAGATCCCTAACTGTGTAATCGAACCAACAGA
AAGCAAAATGGCAACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATG
GCGTGTTTTTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAG
GACGGTTATTCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGAT
CATCATCCGAGCCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGA
GAATTAGAGAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAG
AATAGCGTGGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGC
CATTGCTCAAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTG
TTCGCAGGGCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCC
AAGGGATGTGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAA
ATCAATGAAGTTTAAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGA
ATGAATATATTGACTCTGCTGTGAGACGTGTTCTTTTGAGACAGGGTGTA
CTTGGTATTAGGTNCAGATCATGCTTAGTTGGGATCCTAAATGGAAGCAG
GTCCTACTACCCCTCTACCTGATCTC
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