FC931799
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_HALMA (30S ribosomal protein S3P OS=Haloarcula marismortui GN=rps3p PE=3 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 4.862e-25 Identity = 59/183 (32.24%), Postives = 110/183 (60.11%), Query Frame = 3 Query: 120 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668 ++ +++F+ DG+ +++E EL GY G++V TPM T+I+++A + V+G+ G+ IR++T+ ++ RF + V++ ++V+ L A A+ L L G R+A + + IMESGA G E+++SGK+ R++ KF GY+ +G+P E +DS V +++ G +G+R + Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGVRVK 181
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METHJ (30S ribosomal protein S3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps3p PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25 Identity = 67/180 (37.22%), Postives = 100/180 (55.56%), Query Frame = 3 Query: 129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668 +RKFVADGV + L EL GY G+++ TP+ T++ I A + V+G+ G+ +R LT + + +E+ ++V+N L A AE L L G R+A LR IM+SGA GCEV++SGKL R + KF +GY+ SG PVN +D + + GV+G++ R Sbjct: 4 ERKFVADGVRKVRVERHLGHELKRAGYGGMDLIRTPLGTQVTIFAEKPGIVIGKGGKVVRTLTQDLATTYGVESPQIEV--QQVDNPNLNAQIMAERLASALERGWYFRKAGSSTLRRIMDSGALGCEVVISGKLTGARGRVQKFTEGYIKHSGDPVNTLVDKGYAVAIKKLGVIGVQVR 181
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METLZ (30S ribosomal protein S3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps3p PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.848e-24 Identity = 62/180 (34.44%), Postives = 104/180 (57.78%), Query Frame = 3 Query: 129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668 ++KFVADGV + + L +EL GY G+++ TP+ T++ I A + V+G+ G+ +R+LT+ + + VE+ ++V N L A AE L L G R+A V+R +M+SGA GCEVI++GKL RA+ KF +GY+ SG+P ++ + + G++G++ + Sbjct: 4 EKKFVADGVRKVRVEQYLNKELKRAGYGGMDIVRTPVGTQVTIFAEKPGIVIGKGGKLVRQLTTDLSTVYGIESPQVEV--QQVANPNLNAQIMAERLANALERGWYFRKAGTSVIRRVMDSGALGCEVIIAGKLTGARARVQKFVEGYIKHSGEPSESIVEKGYATAIKKLGIIGVQVK 181
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_NATPD (30S ribosomal protein S3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps3p PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.413e-24 Identity = 58/183 (31.69%), Postives = 110/183 (60.11%), Query Frame = 3 Query: 120 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668 ++ + +F+ DG+ +++E + EL+ GY G+EV TPM T+I+++A + V+G+ G+ IR++T+ +++ F + V++ ++V+ L A A+ L L G R+A + + IMESGA G E+I+SGK+ R++ KF GY+ +G+P +DS V +++ G +G++ + Sbjct: 1 MADEHQFIHDGLQRTQIDEFFSEELSRAGYGGMEVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTTLEEEFGLEDPQVDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIILSGKVTGARSRVEKFNRGYIKHNGEPAESIVDSGVGTAVMKLGTIGVQVK 181
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METTH (30S ribosomal protein S3P OS=Methanobacterium thermoautotrophicum GN=rps3p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.116e-24 Identity = 61/180 (33.89%), Postives = 101/180 (56.11%), Query Frame = 3 Query: 129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668 ++ FV +G+ ++E L +EL GY G++V+VTPM T +++ A R V+G G+ +R +T ++ +F VE+ ++V+ L A + L G+ RR Y +R IM +GA+G EV +SGK+R R+ + KF DGY+ G+P +++ V L+ GVLG+ R Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVR 180
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METJA (30S ribosomal protein S3P OS=Methanocaldococcus jannaschii GN=rps3p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.116e-24 Identity = 65/177 (36.72%), Postives = 100/177 (56.50%), Query Frame = 3 Query: 129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659 +R FV + V ++E +EL++ GYS ++R TP+ T+III A + V+G +G RIRELT + K F + +++ + V N L A A+ + L GL RR + +R +M +GAKG VI+SGKL +RA++ KF GYM G+P E +D + GV+G+ Sbjct: 3 ERTFVKENVKRLLIDEYFKKELSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIRELTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVMNAGAKGVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKPGVIGV 177
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METMJ (30S ribosomal protein S3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps3p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24 Identity = 60/180 (33.33%), Postives = 101/180 (56.11%), Query Frame = 3 Query: 129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668 ++KF+ DGV + + LT+EL GY G+++ TP+ T++ I A + V+G+ G+++R+LT + + VE+ ++V N A AE L L G R+A +R IMESGA GCEVIV+GKL R+++ KF +GY+ G+P ++ + + G +G++ + Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVRQLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVK 181
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METB6 (30S ribosomal protein S3P OS=Methanoregula boonei (strain 6A8) GN=rps3p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24 Identity = 57/180 (31.67%), Postives = 104/180 (57.78%), Query Frame = 3 Query: 129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668 +RKF+A+G A + + LT+EL G+ G+++ TP+ T++ I A + V+G+ G+ + +LT + + + +E+ ++V N A AE L L G R+A ++R +M+SGA GCEV+++GKL RA++ KF +GY+ G+P N ++ + + GV+G++ + Sbjct: 4 ERKFIAEGARKARVEKYLTKELKRAGFGGMDIARTPLGTQVTIFAEKPGIVIGKGGKLVHQLTQDLAQNYGVESPQIEV--QQVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVMDSGALGCEVVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVEKGYAIAIKKLGVIGVQVK 181
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METTP (30S ribosomal protein S3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps3p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23 Identity = 62/180 (34.44%), Postives = 102/180 (56.67%), Query Frame = 3 Query: 129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668 ++KFV +G A ++E L +EL GY G+ + TPM T+I + A + V+G+ G+ IR+LT +++RF+ +++ + V L A A L L G R+A +LR +M+SGA GCE+++SGKL R++ KF GY+ SG+P E +D+ + + G +G + R Sbjct: 4 EKKFVQEGFTKALVDEYLAKELDRAGYGGMVMNRTPMGTQITVYAEKPGMVIGKGGKLIRKLTRDLERRFRLDNPQIDV--QDVGKSDLNARVVANRLASSLEHGWYFRKAGQSMLRRVMDSGALGCEIVISGKLTGPRSRVEKFLAGYIKHSGKPAEEIVDTGYAVAVKKLGAIGCQVR 181
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23 Identity = 62/180 (34.44%), Postives = 98/180 (54.44%), Query Frame = 3 Query: 129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668 ++KFV +G A ++E +L GY G+E+ TPM T+I ++A + ++G+ G+ IR T + RFK +++ ++V L A A L L G R+A L+ IM+SGA GCEVI++GKL R + KF GY+ G+PV E +D R + G++G++ R Sbjct: 4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIRRYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVDVGYARAKKKLGIIGVKVR 181 The following BLAST results are available for this feature:
BLAST of FC931799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931799 ID=FC931799; Name=FC931799; organism=Citrus clementina; type=EST; length=726bpback to top |