FC931799

Overview
NameFC931799
Unique NameFC931799
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_THEPD (30S ribosomal protein S3P OS=Thermofilum pendens (strain Hrk 5) GN=rps3p PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23
Identity = 61/179 (34.08%), Postives = 101/179 (56.42%), Query Frame = 3
Query:  132 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            RK ++ G+ +  LNE L R+L    Y   +   TP+ T++I+ A     V+G KG  I+ +  V+++ F      +++   +V N+ L A   A  +   L+ G+  RRA    L  IM +GA+G E+++SGKL +QR ++ KF  GY+  SG+P  E +D A+  VLL+ G+ G++ R
Sbjct:    6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKAIAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVR 182          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METBU (30S ribosomal protein S3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps3p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.043e-23
Identity = 57/180 (31.67%), Postives = 101/180 (56.11%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            ++KFV DG   A ++E   ++L+  GY G+++  TPM T+I + A +   V+G+ G+ IR+LT  V + +      ++  A++V    L A   A  L   +  G   R+A +  +R +M +GA GCE+++SGKL   R++  K  +GY+  +G+PV++ +D      + + G LG + R
Sbjct:    4 EKKFVQDGYVKASMDEYFAKQLSRAGYGGMDINRTPMGTQITVYAEKPGMVIGKAGKVIRKLTRDVDRLYDLDNPQID--AQEVKRPELNAQMMASRLASSIERGWYFRKAGHNTMRAVMNAGALGCEIVISGKLTGSRSRVEKMVNGYIKHAGKPVDDIVDDGFATAVKKLGTLGCKVR 181          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METST (30S ribosomal protein S3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps3p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.484e-23
Identity = 59/180 (32.78%), Postives = 99/180 (55.00%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            ++ FV +G+    ++E L  +L   GY G++++VTP+ T +I+ A +   V+G  G+ +R +T  ++  F      VE+  ++V+   L     A  +   L  G+  RR  Y ++R IM +GA+G EV +SGK+R  R+   KF +GY+   G+P  +Y+      V L+ GVLGI  R
Sbjct:    3 EKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTVRAITKTLKNNFDLENPQVEV--KEVDVPELNPRIMAHKVVAMLQRGMQFRRVAYSIIRRIMSAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYVKEGFATVQLKPGVLGIYVR 180          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METS3 (30S ribosomal protein S3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.324e-22
Identity = 58/180 (32.22%), Postives = 99/180 (55.00%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            ++ FV +G+    ++E L +EL   GY G++V++TP+ T +++ A R   V+G  G+ +R +T+ ++  F      +E+  ++V+   L     A  +   L  G+  RR  Y  +R IM +GA+G EV +SGK+R  R+   KF +GY+   G+P    ++     V L+ GVLGI  R
Sbjct:    3 EKDFVTEGLKRTRIDEYLEKELERAGYGGMDVQITPLGTMVVVYAERPGMVIGRGGKNVRAITNTLKNDFGLDNPQIEV--KEVSVPELNPKIMAYKIANMLQRGMHFRRVAYSTIRRIMGAGAQGVEVTISGKIRGSRSAVAKFVEGYIKKCGEPSIRLVEEGFATVQLKPGVLGIYVR 180          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_META3 (30S ribosomal protein S3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps3p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.258e-22
Identity = 57/177 (32.20%), Postives = 99/177 (55.93%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            +R F+ + V    ++E L  +L   GYS ++V+ TP+ T I + A +   V+G KG+ ++ELT  +    K+  N  ++  +++ +  L A   A+ +   L  G+  RR  +  +R +M  GAKG  VIVSGKL  +R+++ K+ +GYM   G+P  E +D   +   L+ GV+G+
Sbjct:    3 ERTFIKENVMETLVDEYLKNKLPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETIAT--KYGVNKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVMAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVDQCHKIAKLKLGVVGV 177          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_SULSO (30S ribosomal protein S3P OS=Sulfolobus solfataricus GN=rps3p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.950e-22
Identity = 61/177 (34.46%), Postives = 95/177 (53.67%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            KR F+   +   +++E L ++     Y+GVEV  TP+ T +II A R   ++G  GR I++L  + +K F      + +    V N  L A   A  L   L  G   RRA +  +R IM +GA G E+I+SGKL  +RA+  K K+G +  SGQ + + ID A+   +L+ G+ G+
Sbjct:    5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLAQIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGV 179          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_SULAC (30S ribosomal protein S3P OS=Sulfolobus acidocaldarius GN=rps3p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.852e-22
Identity = 65/177 (36.72%), Postives = 97/177 (54.80%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            KR F+        ++E L ++     Y+GVE+  TP+ T +II A R   ++G+ G+ I++L  V++K F      + + A +  N  L A   A  L   L  G   RRA +  +R IM SGA G EVIVSGKL ++RAK  K K+G +  SGQ + + ID A+   +L+ GV G+
Sbjct:    5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQLAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGV 179          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METM5 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.031e-22
Identity = 56/177 (31.64%), Postives = 96/177 (54.24%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            +R FV + V    ++E    +L   GYS ++++ TP+ T I + A +   V+G KG+ ++ELT  + K +      +E+  ++V N  L        +   L  G+  RR  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ GV+G+
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLAKEYAVKNPQIEV--KQVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGV 177          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_HALSA (30S ribosomal protein S3P OS=Halobacterium salinarium GN=rps3p PE=3 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.571e-22
Identity = 54/178 (30.34%), Postives = 102/178 (57.30%), Query Frame = 3
Query:  135 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            +F+  G+  ++++E    ELA  GY G+E+  TPM  +I+++A +   V+G+ G+ IR++T+ +++RF   +  +++  ++V    L A   A+ L   L  G   R+A +  +  IMESGA G E+++SGK+   R +  KF  GY+  +G+P  E +D      +++ G +G+  +
Sbjct:    6 EFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGKNIRKITTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVDHGKGVAVMKLGTIGVNVK 181          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METKA (30S ribosomal protein S3P OS=Methanopyrus kandleri GN=rps3p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22
Identity = 63/179 (35.20%), Postives = 95/179 (53.07%), Query Frame = 3
Query:  132 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            +KFV  G+   EL+E L  EL   GY G+ ++  P  T+II    R    +G +GR IR +   VQ+RF      V +  +++ +  L     A  L   L  G+  RRA YG LR IM +GAKG  +I+SGKL   RA++ KF +G +   G+P +EY+     + + + G +G+  R
Sbjct:   12 KKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQERFPLL-GRVSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPGAIGVTVR 189          
The following BLAST results are available for this feature:
BLAST of FC931799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_THEPD1.564e-2334.0830S ribosomal protein S3P OS=Thermofilum pendens (... [more]
RS3_METBU2.043e-2331.6730S ribosomal protein S3P OS=Methanococcoides burt... [more]
RS3_METST3.484e-2332.7830S ribosomal protein S3P OS=Methanosphaera stadtm... [more]
RS3_METS31.324e-2232.2230S ribosomal protein S3P OS=Methanobrevibacter sm... [more]
RS3_META32.258e-2232.2030S ribosomal protein S3P OS=Methanococcus aeolicu... [more]
RS3_SULSO2.950e-2234.4630S ribosomal protein S3P OS=Sulfolobus solfataric... [more]
RS3_SULAC3.852e-2236.7230S ribosomal protein S3P OS=Sulfolobus acidocalda... [more]
RS3_METM55.031e-2231.6430S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_HALSA6.571e-2230.3430S ribosomal protein S3P OS=Halobacterium salinar... [more]
RS3_METKA8.582e-2235.2030S ribosomal protein S3P OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionC34201C11EF PostHarveN Citrus clementina cDNA clone C34201C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931799 ID=FC931799; Name=FC931799; organism=Citrus clementina; type=EST; length=726bp
GCTTCTAACACTAAACCTAGGGTTTGCAGAGAGCTAGCTGCGCACACAAG
CCACCTCATTGAGATCATCAGATCCCTAACTGTGTAATCGAACCAACAGA
AAGCAAAATGGCAACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATG
GCGTGTTTTTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAG
GACGGTTATTCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGAT
CATCATCCGAGCCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGA
GAATTAGAGAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAG
AATAGCGTGGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGC
CATTGCTCAAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTG
TTCGCAGGGCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCC
AAGGGATGTGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAA
ATCAATGAAGTTTAAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGA
ATGAATATATTGACTCTGCTGTGAGACGTGTTCTTTTGAGACAGGGTGTA
CTTGGTATTAGGTNCAGATCATGCTTAGTTGGGATCCTAAATGGAAGCAG
GTCCTACTACCCCTCTACCTGATCTC
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