FC931799

Overview
NameFC931799
Unique NameFC931799
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_IGNH4 (30S ribosomal protein S3P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps3p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22
Identity = 66/177 (37.29%), Postives = 97/177 (54.80%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            K+ F+   +   +++E L  +    GYS VE++ TPM T +II A R+  ++G +G+ I+++T V+++ F  P   V +   KV    L A   A  L   L  G   RRA Y  LR IM +GA G +V VSGKLR +RA+  K+  G +  SG  V    D A+  VLL+ GV G+
Sbjct:    9 KKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKVGVEGV 183          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_HALWD (30S ribosomal protein S3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.912e-21
Identity = 53/180 (29.44%), Postives = 105/180 (58.33%), Query Frame = 3
Query:  120 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            ++ + +F+ +G+  ++++E    EL   GY G++V  TPM T+I+++A +   V+G+ G+ IR++T  ++ RF   +  +++  ++V+   L A   A+ L   L  G   R+A +  +  I+ESGA G E+++SGK+   R++  KF  GY+  +G+P  E +D      +++ G +G+
Sbjct:    1 MADEHQFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKVTRELEDRFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIIESGALGAEIVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAVMKLGTIGV 178          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METMP (30S ribosomal protein S3P OS=Methanococcus maripaludis GN=rps3p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.489e-21
Identity = 53/177 (29.94%), Postives = 94/177 (53.11%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            +R FV + V    ++E    +L   GYS ++ + TP+ T I + A +   V+G KG+ ++ELT  +   +      +E+  ++V N  L        +   L  G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ G++G+
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGV 177          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METM7 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20
Identity = 53/177 (29.94%), Postives = 96/177 (54.24%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            +R FV + V    ++E    +L   GYS ++++ TP+ T I + A +   V+G KG+ ++ELT  +   +    N+ ++  ++V +  L        +   L  G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ GV+G+
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGV 177          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METM6 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 53/177 (29.94%), Postives = 96/177 (54.24%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            +R FV + V    ++E    +L   GYS ++++ TP+ T I + A +   V+G KG+ ++ELT  +   +    N+ ++  ++V +  L        +   L  G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ GV+G+
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGV 177          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METVS (30S ribosomal protein S3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20
Identity = 52/177 (29.38%), Postives = 96/177 (54.24%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            +R F+A+ V    ++E    +L   GYS +E++ TP+ T I + A +   V+G KG+ ++ELT  + + +K     +E+  + +    L        +   L  G+  R+  +  +R +M +GAKG  +I+SGKL  +R+++ KF DGYM   G+P  E +  + +   L+ G++G+
Sbjct:    3 ERTFIAENVSETLIDEYFKGKLVRAGYSHLELKKTPIGTRITVFAEKPGFVIGRKGKMVKELTDTLTEVYKVENPQIEV--KPLETPDLDPAIVGHKIAASLEKGMHFRKTAHSAVRRVMAAGAKGVAIIISGKLSGERSRTEKFMDGYMKHCGEPAEELVIKSHQLAKLKLGIVGV 177          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_SULTO (30S ribosomal protein S3P OS=Sulfolobus tokodaii GN=rps3p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.709e-20
Identity = 59/177 (33.33%), Postives = 99/177 (55.93%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            K+ F+   +    ++E L ++     Y+GVE+  TP+ T +II A R   ++G+ G+ I++L  ++++ F    ++ ++    V N  L A   A  L   L  G   RRA +  +R IM +GA G EVI+SGKL ++RAK  K K+G +  SG  +++ +D AV   +L+ GV G+
Sbjct:    5 KKYFLQRSMTKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPALIIGKGGKTIKQLAQMLERYFGL--DNPQITVTSVENPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMNAGALGAEVIISGKLTSERAKYEKLKEGVVYKSGAFLDKIVDRAVAIAMLKPGVYGV 179          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_HYPBU (30S ribosomal protein S3P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps3p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.709e-20
Identity = 55/177 (31.07%), Postives = 95/177 (53.67%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            KR F+   +   +++E L +     GY+GV++   P+ T +II A R   ++G +G  IR+L ++ +  F    ++ ++   +V N  L A   A  +   L  G   RR    + R ++ +GA G ++++SGKLR +RA+  K + G + ++G  V   +D AV  V L+ GVLGI
Sbjct:    5 KRYFIKKAMVQTQIDEYLAKRFYRAGYAGVQIIQFPLGTRVIIYAERPAMIIGRRGETIRQLAAIFEHEFGL--SNPQITVRRVENPDLNARVVASRIAVLLERGAYYRRVANVMARRVLNAGAIGVQIVISGKLRTERARYEKVRRGKVYTTGHQVEYMVDRAVMHVTLKPGVLGI 179          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_AERPE (30S ribosomal protein S3P OS=Aeropyrum pernix GN=rps3p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20
Identity = 63/184 (34.24%), Postives = 96/184 (52.17%), Query Frame = 3
Query:  108 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            M T++ K   F+  G+   +++E L +   E GYS V+V  T + T I I A R   ++G +G  IR L  V Q  F  P   + +  E+  N  L A  QA  +   +  G+  RR  +  +  IM +GA G E+ +SGKL ++RA+  KFK G +  SG  V+E +D A     L +GV+G+
Sbjct:    1 MPTKVVKH--FLNQGLLRTKIDEWLAQNFYEAGYSRVKVVQTSLGTNITIWAERPALIIGRRGATIRRLQEVFQTVFGLPNPRIRV--EQPENPMLDARVQAFRIARSIERGIHFRRVAFAAINRIMSNGALGVEITISGKLTSERARFEKFKAGKVYKSGHKVDELVDRASAYARLPKGVIGV 180          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_ARCFU (30S ribosomal protein S3P OS=Archaeoglobus fulgidus GN=rps3p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 60/180 (33.33%), Postives = 95/180 (52.78%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            +RKFV + +    + E +  E+   G+ GV++  TP+ T++ +   R   V+G+ GRRI+ LT   +K   F   + ++  ++V      A   A  L   L  G   RRA Y  L  IME+GAKGCE+ +SGKL ++RA++ KF  G +V +G P    +       + + GVLG+  R
Sbjct:    4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIKALT---EKLKDFGIENPQVSVDEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIMEAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKLGVLGVSVR 180          
The following BLAST results are available for this feature:
BLAST of FC931799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_IGNH48.582e-2237.2930S ribosomal protein S3P OS=Ignicoccus hospitalis... [more]
RS3_HALWD1.912e-2129.4430S ribosomal protein S3P OS=Haloquadratum walsbyi... [more]
RS3_METMP9.489e-2129.9430S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METM71.239e-2029.9430S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METM61.619e-2029.9430S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METVS3.606e-2029.3830S ribosomal protein S3P OS=Methanococcus vanniel... [more]
RS3_SULTO4.709e-2033.3330S ribosomal protein S3P OS=Sulfolobus tokodaii G... [more]
RS3_HYPBU4.709e-2031.0730S ribosomal protein S3P OS=Hyperthermus butylicu... [more]
RS3_AERPE8.033e-2034.2430S ribosomal protein S3P OS=Aeropyrum pernix GN=r... [more]
RS3_ARCFU8.881e-1933.3330S ribosomal protein S3P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionC34201C11EF PostHarveN Citrus clementina cDNA clone C34201C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931799 ID=FC931799; Name=FC931799; organism=Citrus clementina; type=EST; length=726bp
GCTTCTAACACTAAACCTAGGGTTTGCAGAGAGCTAGCTGCGCACACAAG
CCACCTCATTGAGATCATCAGATCCCTAACTGTGTAATCGAACCAACAGA
AAGCAAAATGGCAACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATG
GCGTGTTTTTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAG
GACGGTTATTCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGAT
CATCATCCGAGCCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGA
GAATTAGAGAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAG
AATAGCGTGGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGC
CATTGCTCAAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTG
TTCGCAGGGCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCC
AAGGGATGTGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAA
ATCAATGAAGTTTAAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGA
ATGAATATATTGACTCTGCTGTGAGACGTGTTCTTTTGAGACAGGGTGTA
CTTGGTATTAGGTNCAGATCATGCTTAGTTGGGATCCTAAATGGAAGCAG
GTCCTACTACCCCTCTACCTGATCTC
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