FC931802

Overview
NameFC931802
Unique NameFC931802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931802 vs. ExPASy Swiss-Prot
Match: MKRN2_HUMAN (Probable E3 ubiquitin-protein ligase makorin-2 OS=Homo sapiens GN=MKRN2 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 58/203 (28.57%), Postives = 86/203 (42.36%), Query Frame = 1
Query:  196 SKRVLCKFFAHGACLKGEHCEFSHDWKDP-PNNICTYYQKGFCSYASRCRYEHVKP---------XXXXXXXXXXXXXXXXXXXXXXGITKVPGAMP-------------ELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRS----------------ICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLH 687
            +K++ C++F HG C +G  C FSHD  +  P+ IC YYQKG+C+Y +RCRY+H +P                                I K     P              LS ++     P+  + NP S C+D   + E+ +P +   A RS                +C +AAAG C  G+ C ++HG+ C  C    LH
Sbjct:    3 TKQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSAAAGGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKTQPSMVS-NPGS-CSDPQPSPEM-KPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECRFGDACVYLHGEVCEICRLQVLH 202          
BLAST of FC931802 vs. ExPASy Swiss-Prot
Match: MKRN1_DANRE (Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio GN=mkrn1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 53/184 (28.80%), Postives = 79/184 (42.93%), Query Frame = 1
Query:  196 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNN-ICTYYQKGFCSYASRCRYEHVKP-------------XXXXXXXXXXXXXXXXXXXXXXGITKVP---GAMPELSALSRPFLPPNKTAWNPESVCNDS---LENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKACLH 687
            +K V C++F HG C +GE+C +SHD        IC ++QKG C++  RCRYEH KP                                   G  + P   GA+  ++A    F+P        + V  +    L  +E ++ +  K   + +C +AA G C  G  C ++HGD C  CG   LH
Sbjct:   19 TKHVTCRYFMHGLCKEGENCRYSHDLSSCKQTMICKFFQKGCCAFGDRCRYEHTKPSKQDEVPSSKPSMPLTAAPLAGTPEPVSDGPGGTTGAQEKPQGSGAVDWVNAAE--FVPGQPYCGRADPVLCEGPGPLIEEEYEKEQANKEMKKQLCPYAAVGECRYGLNCAYLHGDVCDMCGLQVLH 200          
BLAST of FC931802 vs. ExPASy Swiss-Prot
Match: MKRN2_TAKRU (Probable E3 ubiquitin-protein ligase makorin-2 OS=Takifugu rubripes GN=mkrn2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  196 SKRVLCKFFAHGACLKGEHCEFSHD-WKDPPNNICTYYQKGFCSYASRCRYEHVK 357
            +K+V C++F HG C +G HC+FSHD     P+ IC +YQ+G C+Y  RCRY+HVK
Sbjct:    3 TKQVTCRYFLHGVCREGNHCQFSHDPSSSKPSTICKFYQRGTCAYGERCRYDHVK 57          
BLAST of FC931802 vs. ExPASy Swiss-Prot
Match: MKRN2_XENTR (Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus tropicalis GN=mkrn2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1
Query:  196 SKRVLCKFFAHGACLKGEHCEFSHDWK-DPPNNICTYYQKGFCSYASRCRYEHVKP 360
            +K V C++F HG C +G  C FSHD     P+ +C +YQ+G C+Y +RCRY+HVKP
Sbjct:    3 TKHVTCRYFLHGVCREGGRCLFSHDLATSKPSTVCRFYQRGQCAYGARCRYDHVKP 58          
The following BLAST results are available for this feature:
BLAST of FC931802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
MKRN2_HUMAN2.620e-1728.57Probable E3 ubiquitin-protein ligase makorin-2 OS=... [more]
MKRN1_DANRE2.620e-1728.80Probable E3 ubiquitin-protein ligase makorin-1 OS=... [more]
MKRN2_TAKRU1.346e-1352.73Probable E3 ubiquitin-protein ligase makorin-2 OS=... [more]
MKRN2_XENTR1.943e-1250.00Probable E3 ubiquitin-protein ligase makorin-2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34201D02EF PostHarveN Citrus clementina cDNA clone C34201D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931802 ID=FC931802; Name=FC931802; organism=Citrus clementina; type=EST; length=689bp
GAAATTCACGTGCCCCCTTCATTGTCGCTTCAATTTCTCTCTCCCCATTT
TAGCTTTCCATTAAAACAATCAATCAATTGAATGATTTTAAGTTTCTAGG
GTTTCAATTGATTCATCGGAAGCAAATAAAAAGGACTCGTTTCGAACACT
TTAATTTATTTGCGTCTTTCACAAATTCAAGAACGACACGACATGTCCAA
GAGGGTCCTTTGCAAGTTCTTTGCTCATGGAGCATGTCTGAAAGGCGAGC
ATTGTGAATTTTCACATGATTGGAAGGATCCACCGAATAATATATGCACT
TATTATCAGAAAGGGTTCTGCTCTTATGCTAGTCGGTGCAGATATGAGCA
TGTCAAACCTTCTCGGTCAGAGTTGGCTGCTTCATCTTCCTCATCAGTTT
CTCATCCTTCAAGAGCTACATCAAGTGGGATAACTAAAGTTCCAGGTGCC
ATGCCAGAGCTATCTGCATTGAGTAGACCTTTTCTTCCTCCTAACAAGAC
AGCATGGAATCCGGAGTCTGTGTGCAATGATTCTTTAGAGAATGATGAGG
TTGACGAGCCCAGGAATCTAAAACCTGCTGACCGTTCTATCTGTTCATTT
GCTGCTGCTGGTAATTGTCCTCGTGGGGAAAAATGTCCTCATATTCATGG
AGACACATGCCCAACTTGTGGGAAAGCATGCTTGCATCC
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