FC931803

Overview
NameFC931803
Unique NameFC931803
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB6_DICDI (Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 55/165 (33.33%), Postives = 87/165 (52.73%), Query Frame = 1
Query:  145 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRH-YAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 633
            K V +GD +VGKT ++  +  +TF   Y  T+  D  S  + ++  TV L LWDTAGQE +  L P   R + V ++ + + +K S+ N   KWI ++R+     V ++LVG K DL D +Q          ++  +GE   K     ++ E S+K   N+KA+F
Sbjct:    8 KLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTI-KWIEDVRNERGNNVVIMLVGNKTDLADKRQ----------VSIEEGEAKAKEYDI-MFTETSAKAGFNIKALF 160          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  145 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 648
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + ++ S+   AK W+ EL R  +P + + L G K DL + +        AV    AQ       +   +++E S+KT  NV  +F A  K
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 179          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  145 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 648
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + ++ S+   AK W+ EL R  +P + + L G K DL + +        AV    AQ       +   +++E S+KT  NV  +F A  K
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 179          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  145 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 648
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + ++ S+   AK W+ EL R  +P + + L G K DL + +        AV    AQ       +   +++E S+KT  NV  +F A  K
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 179          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  145 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 648
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + ++ S+   AK W+ EL R  +P + + L G K DL + +        AV    AQ       +   +++E S+KT  NV  +F A  K
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 179          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  145 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 648
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + ++ S+   AK W+ EL R  +P + + L G K DL + +        AV    AQ       +   +++E S+KT  NV  +F A  K
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 179          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  145 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 648
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + ++ S+   AK W+ EL R  +P + + L G K DL + +        AV    AQ       +   +++E S+KT  NV  +F A  K
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 179          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB23_MOUSE (Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 57/165 (34.55%), Postives = 78/165 (47.27%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 633
            IK V VG+GAVGK+ M+  Y    F  DY  T+  D     + V+   V L LWDTAGQE+++ +    YRGA   +L FS   + S+E ++  W  ++      +P  LV  K+DL DD            I   + E L K +    Y   S K   NV  VF
Sbjct:   10 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDDS----------CIKNEEAEGLAKRLKLRFY-RTSVKEDLNVSEVF 162          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 50/176 (28.41%), Postives = 89/176 (50.57%), Query Frame = 1
Query:  133 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            S   K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTAGQE +  +    YRGA   L+ + +  +++Y +++  W+ + R+   P   +IL+G K DL   +           +T  + ++  +  G  +++E S+KT +NV+  F  A K +
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 50/176 (28.41%), Postives = 89/176 (50.57%), Query Frame = 1
Query:  133 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            S   K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTAGQE +  +    YRGA   L+ + +  +++Y +++  W+ + R+   P   +IL+G K DL   +           +T  + ++  +  G  +++E S+KT +NV+  F  A K +
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAKTGENVEDAFLEAAKKI 172          
The following BLAST results are available for this feature:
BLAST of FC931803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB6_DICDI2.251e-1533.33Ras-related protein Rab-6 OS=Dictyostelium discoid... [more]
RAB5A_PIG2.251e-1531.76Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_MOUSE2.251e-1531.76Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA2.251e-1531.76Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN2.251e-1531.76Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA2.251e-1531.76Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN2.251e-1531.76Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
RAB23_MOUSE2.251e-1534.55Ras-related protein Rab-23 OS=Mus musculus GN=Rab2... [more]
RAB14_RAT2.251e-1528.41Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB2.251e-1528.41Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionC34201D03EF PostHarveN Citrus clementina cDNA clone C34201D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931803 ID=FC931803; Name=FC931803; organism=Citrus clementina; type=EST; length=654bp
CTATCCTTTGTCTGTCTCTGCTCTTACAAAAATGCCGCACTTGTTCTGAG
TTAGGGTTCTGTAGCTGTAAAAACAAAGAAAGACGAGTAACACAGAGGCT
GTCTCAAGTGCACGTGGCGCGAGATGAGTGCGTCGAGGTTCATAAAGTGC
GTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTCATTTCTTA
CACCAGCAACACTTTCCCGACGGATTATGTGCCAACAGTATTTGACAATT
TCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTTAATCTTGGGTTGTGG
GACACTGCAGGCCAGGAAGATTACAATAGACTAAGGCCATTGAGCTACCG
TGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCATTAGCAAGGCCAGCT
ATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTGAGGCATTATGCACCT
GGTGTTCCAATGATTCTTGTCGGGACGAAGCTCGATCTTCGGGATGATAA
GCAGTTCCTTGCAGATCACCATGGTGCAGTGCCAATTACCACGGCCCAAG
GGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTTTACATCGAGTGTAGT
TCCAAGACACAACAGAATGTGAAAGCTGTCTTTGATGCAGCCATCAAGGT
GGTT
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