FC931803

Overview
NameFC931803
Unique NameFC931803
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.117e-14
Identity = 50/172 (29.07%), Postives = 86/172 (50.00%), Query Frame = 1
Query:  145 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     +ILVG K D+ +++           + T +G  L + +G   + E S+K   +V+  F+  +  +
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGRLLAEQLGFD-FFEASAKENISVRQAFERLVDAI 183          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.117e-14
Identity = 50/172 (29.07%), Postives = 86/172 (50.00%), Query Frame = 1
Query:  145 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     +ILVG K D+ +++           + T +G  L + +G   + E S+K   +V+  F+  +  +
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGRLLAEQLGFD-FFEASAKENISVRQAFERLVDAI 183          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.117e-14
Identity = 50/172 (29.07%), Postives = 86/172 (50.00%), Query Frame = 1
Query:  145 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     +ILVG K D+ +++           + T +G  L + +G   + E S+K   +V+  F+  +  +
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGRLLAEQLGFD-FFEASAKENISVRQAFERLVDAI 183          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB24_MOUSE (Ras-related protein Rab-24 OS=Mus musculus GN=Rab24 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.117e-14
Identity = 62/175 (35.43%), Postives = 87/175 (49.71%), Query Frame = 1
Query:  124 MSASRF-IKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDL--RDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 633
            MS  R  +K V +G   VGKT ++  Y  + F    Y  T+   F A V+  G  TV LG+WDTAG E Y  +  + YRGA   ++ + L   +S+E  AK W+ ELR    G  + L GTK DL   D ++   D H          ++    I A ++ E SSKT Q+V  +F
Sbjct:    1 MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMCVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFER-AKFWVKELRSLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDV--------QDYADNIKAQLF-ETSSKTGQSVDELF 165          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB17_HUMAN (Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.117e-14
Identity = 60/176 (34.09%), Postives = 95/176 (53.98%), Query Frame = 1
Query:  127 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPG-VPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEEL---RKLIGAPVYIECSSKTQQNVKAVFD 636
            S  R  K V +G G+VGK+ + + Y  N F +  +PTV   F   VV  G+T + L +WDTAGQE Y+ +  L +RGA+  LL + +  K S+   A++W+ +L     PG V ++LVG K DL  +++          +T  +G+E    +KL+    ++E S+K    V  VF+
Sbjct:   15 SQPRVFKLVLLGSGSVGKSSLALRYVKNDFKS-ILPTVGCAFFTKVVDVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLK-AQQWLKDLEEELHPGEVLVMLVGNKTDLSQERE----------VTFQEGKEFADSQKLL----FMETSAKLNHQVSEVFN 174          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 50/150 (33.33%), Postives = 80/150 (53.33%), Query Frame = 1
Query:  133 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPMILVGTKLDL-------RDDKQFLADHHGAVPITTAQGE 555
            S   K V +GD  VGK+ +L  +T N F  D   T+   F+  ++ ++G T+   +WDTAGQE Y  +    YRGA   LL + +  + S++NV  +W+ ELR +A   + +++VG K DL        D+ + LA+  G   + T+  E
Sbjct:   10 SYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNV-HRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAME 158          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RB27A_RAT (Ras-related protein Rab-27A OS=Rattus norvegicus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 56/184 (30.43%), Postives = 85/184 (46.20%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-----------DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR--HYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  ++L LWDTAGQE +  L    +R A  FLL F L ++ S+ NV + WI +L+   Y     ++L G K DL D +           +   +  EL +  G P Y E S+    N+    +  + ++
Sbjct:   10 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGTVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYCENPDIVLCGNKSDLEDQR----------AVKEEEARELAEKYGIP-YFETSAANGTNISQAIEMLLDLI 181          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 50/169 (29.59%), Postives = 86/169 (50.89%), Query Frame = 1
Query:  145 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            K V +GD AVGK+ +L  +  N F  D   T+   F    +V+D  TV   +WDTAGQE Y  +    YRGA   +L + +  + +++++  +W+ ELR++A   + +IL+G K DL + +           + T   +E  +  G   ++E S+    NV++ F   +
Sbjct:   19 KVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHI-PRWLEELRNHADKNIVIILIGNKCDLVNQRD----------VPTEDAKEFAEKEGL-FFLETSALEATNVESAFTTVL 175          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB24_HUMAN (Ras-related protein Rab-24 OS=Homo sapiens GN=RAB24 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 62/175 (35.43%), Postives = 87/175 (49.71%), Query Frame = 1
Query:  124 MSASRF-IKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDL--RDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 633
            MS  R  +K V +G   VGKT ++  Y  + F    Y  T+   F A V+  G  TV LG+WDTAG E Y  +  + YRGA   ++ + L   +S+E  AK W+ ELR    G  + L GTK DL   D ++   D H          ++    I A ++ E SSKT Q+V  +F
Sbjct:    1 MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFER-AKFWVKELRSLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDV--------QDYADNIKAQLF-ETSSKTGQSVDELF 165          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAB12_HUMAN (Putative Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=5 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 50/166 (30.12%), Postives = 83/166 (50.00%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 633
            ++ + +G   VGKT ++  +T +TF      TV  +F    V + G  + L +WDTAGQE +N +    YR A   +L + +  K +++++  KW+  +  YA     ++LVG KLD   D++          IT  QGE+  + I    + E S+K   NV  +F
Sbjct:   43 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 197          
The following BLAST results are available for this feature:
BLAST of FC931803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3B_MOUSE1.117e-1429.07Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU1.117e-1429.07Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB3B_BOVIN1.117e-1429.07Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]
RAB24_MOUSE1.117e-1435.43Ras-related protein Rab-24 OS=Mus musculus GN=Rab2... [more]
RAB17_HUMAN1.117e-1434.09Ras-related protein Rab-17 OS=Homo sapiens GN=RAB1... [more]
RGP2_ORYSJ1.459e-1433.33Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RB27A_RAT1.459e-1430.43Ras-related protein Rab-27A OS=Rattus norvegicus G... [more]
RB11A_LOTJA1.459e-1429.59Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RAB24_HUMAN1.459e-1435.43Ras-related protein Rab-24 OS=Homo sapiens GN=RAB2... [more]
RAB12_HUMAN1.459e-1430.12Putative Ras-related protein Rab-12 OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34201D03EF PostHarveN Citrus clementina cDNA clone C34201D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931803 ID=FC931803; Name=FC931803; organism=Citrus clementina; type=EST; length=654bp
CTATCCTTTGTCTGTCTCTGCTCTTACAAAAATGCCGCACTTGTTCTGAG
TTAGGGTTCTGTAGCTGTAAAAACAAAGAAAGACGAGTAACACAGAGGCT
GTCTCAAGTGCACGTGGCGCGAGATGAGTGCGTCGAGGTTCATAAAGTGC
GTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTCATTTCTTA
CACCAGCAACACTTTCCCGACGGATTATGTGCCAACAGTATTTGACAATT
TCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTTAATCTTGGGTTGTGG
GACACTGCAGGCCAGGAAGATTACAATAGACTAAGGCCATTGAGCTACCG
TGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCATTAGCAAGGCCAGCT
ATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTGAGGCATTATGCACCT
GGTGTTCCAATGATTCTTGTCGGGACGAAGCTCGATCTTCGGGATGATAA
GCAGTTCCTTGCAGATCACCATGGTGCAGTGCCAATTACCACGGCCCAAG
GGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTTTACATCGAGTGTAGT
TCCAAGACACAACAGAATGTGAAAGCTGTCTTTGATGCAGCCATCAAGGT
GGTT
back to top