FC931805

Overview
NameFC931805
Unique NameFC931805
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931805 vs. ExPASy Swiss-Prot
Match: SERA_PIG (D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.873e-21
Identity = 62/150 (41.33%), Postives = 82/150 (54.67%), Query Frame = 3
Query:  240 VLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKXG 686
            VLI++ L     ++L +    V    NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GK L +LG G+ G
Sbjct:    9 VLISDSLDPCCREILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTSDVI-NAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQIPQATASMKDGKWERKKFMGTELNGKVLGILGLGRIG 157          
BLAST of FC931805 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.628e-21
Identity = 51/149 (34.23%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  240 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKXG 686
            VL+++ + Q G+D+L + A VD    LS  E+   +   DA+++RS TKV   + ++ + +LK++GRAGVG+DN+D+ AAT  G +                        R++  A+ SVK  KW+R +++G  +  KTL V+G GK G
Sbjct:   32 VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGS-QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSVKESKWERKQFIGTEVYKKTLGVVGLGKIG 179          
BLAST of FC931805 vs. ExPASy Swiss-Prot
Match: SERA_BOVIN (D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 55/124 (44.35%), Postives = 71/124 (57.26%), Query Frame = 3
Query:  315 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKXG 686
            NLS EEL  ++  C+ LIVRS TKV  D+  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GK L +LG G+ G
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTSDII-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAAASMKDGKWERKKFMGTELNGKVLGILGLGRIG 157          
BLAST of FC931805 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 55/151 (36.42%), Postives = 81/151 (53.64%), Query Frame = 3
Query:  234 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKXG 686
            P VLIA+KL Q+ +  L +   V         +L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +A+ADAS++A  W+R+ + G  + GKT+ V+G G+ G
Sbjct:    4 PVVLIADKLAQSTVAALGDQVEVRWVDGPDRTKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIAEADASLRAHIWKRSSFSGTEIFGKTVGVVGLGRIG 153          
BLAST of FC931805 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 54/150 (36.00%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  240 VLIAEKLGQAGLDLLNEFANVDCAY-NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKXG 686
            VL+++K+   GL  L E   ++    N++  E   ++   DAL+VRS TKV  D+F      LK+VGRAGVG+DN+D+  AT+ G +                        R++ QA+ SVK+ +W R  YVG  L GKTL ++G G+ G
Sbjct:    4 VLVSDKMSNDGLQPLIESDFIEIVQKNVADAE--DELHTFDALLVRSATKVTEDLFNKMTS-LKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVGSELYGKTLGIVGLGRIG 150          
BLAST of FC931805 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.872e-17
Identity = 52/151 (34.44%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  234 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKXG 686
            P VLIA+KL  + +  L +   V        ++L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +  ADAS++   W+R+ + G  + GKT+ V+G G+ G
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIG 153          
BLAST of FC931805 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.872e-17
Identity = 52/151 (34.44%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  234 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKXG 686
            P VLIA+KL  + +  L +   V        ++L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +  ADAS++   W+R+ + G  + GKT+ V+G G+ G
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIG 153          
BLAST of FC931805 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 45/162 (27.78%), Postives = 79/162 (48.77%), Query Frame = 3
Query:  231 KPTVLIAEKLGQAGLDLLNEFANVDC---AYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRN-------KYVGVSLVGKTLAVLGFGKXG 686
            KP VLI  K+ + G+ +L E   V+     + +S E L  K+   DAL+     +++ +VF++ A RLK+V    VG DN+D+  AT+ G                          R + +AD  V++G+W++         ++G  + G+T+ ++GFG+ G
Sbjct:    2 KPKVLITRKIPENGIKMLREHFEVEVWEDEHEISREVLLEKVRDVDALVTMLSERIDAEVFDA-APRLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIG 162          
BLAST of FC931805 vs. ExPASy Swiss-Prot
Match: GYAR_PYRFU (Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 45/162 (27.78%), Postives = 77/162 (47.53%), Query Frame = 3
Query:  231 KPTVLIAEKLGQAGLDLLNEFANVDC---AYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGKXG 686
            KP V I   + + G+++L E   V+       +  E+L  K+   DAL+     +++++VFE+ A RL++V    VG DN+D+  AT  G                          R+V + D  V++G+W+R         ++G  L GKT+ ++GFG+ G
Sbjct:    2 KPKVFITRAIPENGINMLEEEFEVEVWEEEREIPREKLLEKVKDVDALVTMLSERIDQEVFEN-APRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIG 162          
BLAST of FC931805 vs. ExPASy Swiss-Prot
Match: GYAR_THELI (Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 42/162 (25.93%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  231 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEE---LCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGKXG 686
            KP V I  ++ + G+ ++ +F  ++   +        L  K+   DAL+     KV++++ E+ A +LK++ +  VG DN+D+  AT+ G                          R + +ADA V++G+W++++       ++G  L GKTL ++GFG+ G
Sbjct:    2 KPKVFITRQIPENGIKMIEKFYEIELWKDPKAPPRGVLLEKVREVDALVTLVTDKVDKELLEN-APKLKIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIG 162          
The following BLAST results are available for this feature:
BLAST of FC931805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
SERA_PIG3.873e-2141.33D-3-phosphoglycerate dehydrogenase OS=Sus scrofa G... [more]
SERA_SYNY38.628e-2134.23D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
SERA_BOVIN1.127e-2044.35D-3-phosphoglycerate dehydrogenase OS=Bos taurus G... [more]
SERA_MYCLE2.350e-1836.42D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_BACSU8.929e-1836.00D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
SERA_MYCTU9.872e-1734.44D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO9.872e-1734.44D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GYAR_THEON2.972e-1327.78Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
GYAR_PYRFU4.292e-1227.78Glyoxylate reductase OS=Pyrococcus furiosus GN=gya... [more]
GYAR_THELI1.631e-1125.93Glyoxylate reductase OS=Thermococcus litoralis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34201D05EF PostHarveN Citrus clementina cDNA clone C34201D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931805 ID=FC931805; Name=FC931805; organism=Citrus clementina; type=EST; length=687bp
GGCTCTCGCTCCACTGCACTCCCTCTCCCCATACGACGCCGCTTTAACCA
CCCCGAAAAATGGCCACGTCAGCAGCCTCCTGCGCTGCCTCCCTCCGTCA
GCCTTCCCTCAAGCTATCACTGTCTTCCAAACACTCTCTTTCCCCTCTAT
TCTCCGTCTCCTTCAACCACAAGCGGGCCCCGCCGCGGCTCGTAATAATC
GCATCCGCCGCCGCCGACGGCATCTCCTCAAAACCGACCGTTTTGATCGC
CGAGAAGCTCGGACAGGCCGGCTTGGATCTTCTCAACGAGTTCGCCAACG
TGGACTGCGCATACAACTTGTCGCCAGAGGAGCTCTGCACGAAGATCTCG
CTCTGCGACGCGCTGATCGTGCGCAGCGGCACGAAGGTCAATCGCGACGT
GTTCGAGTCGTCAGCTGGAAGGTTGAAGGTCGTTGGGAGAGCCGGTGTTG
GTATTGATAATGTGGATCTGGCTGCGGCTACTGAGTTTGGTTGCTTGGTT
GTGAACGCGCCGACGGCGAATACCGTTGCGGCTGCTGAGCATGGGATCGC
GCTTTTGGCTGCCATGGCTAGAAATGTCGCCCAGGCTGATGCCTCTGTTA
AGGCTGGAAAGTGGCAAAGGAACAAATATGTGGGTGTCTCCCTTGTGGGT
AAAACACTTGCTGTATTGGGATTCGGAAAGGNTGGAT
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