FC931831

Overview
NameFC931831
Unique NameFC931831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDUS7_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Homo sapiens GN=NDUFS7 PE=1 SV=3)

HSP 1 Score: 197.208 bits (500), Expect = 7.068e-50
Identity = 89/127 (70.08%), Postives = 104/127 (81.89%), Query Frame = 3
Query:  321 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGC
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGC 183          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDUS7_GORGO (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.068e-50
Identity = 89/127 (70.08%), Postives = 104/127 (81.89%), Query Frame = 3
Query:  321 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGC
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGC 183          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDUS7_BOVIN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Bos taurus GN=NDUFS7 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.068e-50
Identity = 89/127 (70.08%), Postives = 104/127 (81.89%), Query Frame = 3
Query:  321 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            S   E+V++KLDD++N+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIYVPGC
Sbjct:   60 SSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 186          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDUS7_PONAB (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo abelii GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.231e-50
Identity = 88/127 (69.29%), Postives = 104/127 (81.89%), Query Frame = 3
Query:  321 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            S   E+V++KLDD++N+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGC
Sbjct:   57 SSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGC 183          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDUS7_MOUSE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Mus musculus GN=Ndufs7 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.206e-49
Identity = 88/124 (70.97%), Postives = 104/124 (83.87%), Query Frame = 3
Query:  330 AEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            AE+V++KLDD++N+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQ+DVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIYVPGC
Sbjct:   71 AEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 194          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_POLSQ (NADH-quinone oxidoreductase subunit B OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.686e-49
Identity = 88/122 (72.13%), Postives = 100/122 (81.97%), Query Frame = 3
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGC
Sbjct:   11 FVTTTADQLINWTRNGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHNSYSVVRGCDRIVPVDIYVPGC 132          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_POLNS (NADH-quinone oxidoreductase subunit B OS=Polynucleobacter necessarius (strain STIR1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.686e-49
Identity = 88/122 (72.13%), Postives = 100/122 (81.97%), Query Frame = 3
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGC
Sbjct:   11 FVTTTADQLINWTRNGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHNSYSVVRGCDRIVPVDIYVPGC 132          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_THIDA (NADH-quinone oxidoreductase subunit B OS=Thiobacillus denitrificans (strain ATCC 25259) GN=nuoB PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.508e-49
Identity = 90/122 (73.77%), Postives = 100/122 (81.97%), Query Frame = 3
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV +K D ++NY+R GS+WPM+FGLACCAVEMM  GA+RYDLDRFGI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGC
Sbjct:   11 FVTTKADQLINYMRTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 132          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_ALHEH (NADH-quinone oxidoreductase subunit B OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.508e-49
Identity = 90/122 (73.77%), Postives = 99/122 (81.15%), Query Frame = 3
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV +  D V+N+ R GS+WPM+FGLACCAVEMM  GAARYDLDRFGIIFRPSPRQSDVM+VAGTL NKMAPALRKVYDQMP+PRWVISMGSCAN              CDR+VPVD+YVPGC
Sbjct:   11 FVTTSADKVINWARTGSMWPMTFGLACCAVEMMQAGAARYDLDRFGIIFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGC 132          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_DECAR (NADH-quinone oxidoreductase subunit B OS=Dechloromonas aromatica (strain RCB) GN=nuoB PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.581e-49
Identity = 88/122 (72.13%), Postives = 100/122 (81.97%), Query Frame = 3
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV +  D ++NY+R GS+WPM+FGLACCAVEM+H G +RYDLDRFG++FRPSPRQSDVM+VAGTLTNKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGC
Sbjct:   11 FVTTTADKLINYMRTGSLWPMTFGLACCAVEMIHAGVSRYDLDRFGVVFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 132          
The following BLAST results are available for this feature:
BLAST of FC931831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDUS7_HUMAN7.068e-5070.08NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_GORGO7.068e-5070.08NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_BOVIN7.068e-5070.08NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_PONAB9.231e-5069.29NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_MOUSE1.206e-4970.97NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NUOB_POLSQ2.686e-4972.13NADH-quinone oxidoreductase subunit B OS=Polynucle... [more]
NUOB_POLNS2.686e-4972.13NADH-quinone oxidoreductase subunit B OS=Polynucle... [more]
NUOB_THIDA3.508e-4973.77NADH-quinone oxidoreductase subunit B OS=Thiobacil... [more]
NUOB_ALHEH3.508e-4973.77NADH-quinone oxidoreductase subunit B OS=Alkalilim... [more]
NUOB_DECAR4.581e-4972.13NADH-quinone oxidoreductase subunit B OS=Dechlorom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34201F08EF PostHarveN Citrus clementina cDNA clone C34201F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931831 ID=FC931831; Name=FC931831; organism=Citrus clementina; type=EST; length=701bp
GGTAACCACCACTTTCAAACCCCAACAACAATCAATTTCTCTCTCGCTTT
GCCCCCGTGTGAGAAAACTAAACCAAACCAAACCAAACCCCACCCCACAA
CCCCCAAAACACAAGCCCAAAAAAAAAAAAAAAAACTATGGCGGTACTCA
CCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGCAACGCGCCGCC
TGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTC
CTCCTTCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCCACCGCCCTCGA
CCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCGTGATCTCTAAA
TTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATCTGGCCCATGTC
CTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACACCGGTGCTGCTC
GTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCAGCCCTCGCCAA
TCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAGATGGCCCCTGC
CCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTGGGTCATTTCTA
TGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACTCTTACTCTGTT
GTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTATGTTCCGGGCTG
C
back to top