FC931831

Overview
NameFC931831
Unique NameFC931831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_ECO81 (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O81 (strain ED1a) GN=nuoB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.386e-29
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 3 
Query:  342 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGC 158
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_ECO7I (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=nuoB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.386e-29
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 3 
Query:  342 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGC 158
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_ECO5E (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=nuoB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.386e-29
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 3 
Query:  342 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGC 158
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_ECO57 (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O157:H7 GN=nuoB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.386e-29
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 3 
Query:  342 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGC 158
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_ECO55 (NADH-quinone oxidoreductase subunit B OS=Escherichia coli (strain 55989 / EAEC) GN=nuoB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.386e-29
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 3 
Query:  342 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGC 158
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_ECO45 (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=nuoB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.386e-29
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 3 
Query:  342 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGC 158
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_ECO27 (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=nuoB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.386e-29
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 3 
Query:  342 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGC 158
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_ECO24 (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=nuoB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.386e-29
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 3 
Query:  342 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGC 158
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB2_STRGG (NADH-quinone oxidoreductase subunit B 2 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.386e-29
Identity = 57/115 (49.57%), Postives = 84/115 (73.04%), Query Frame = 3 
Query:  360 VVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGII-FRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            V+N+ RR S+W  +FGLACCA+E +    AR+D  R G+I F P PRQ+D+M+V+GT+T+KMAPA++++Y+QMP+P++VIS G+C+N               D+I+PVD+YVPGC
Sbjct:   45 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGC 159
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_SALTY (NADH-quinone oxidoreductase subunit B OS=Salmonella typhimurium GN=nuoB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.364e-29
Identity = 61/121 (50.41%), Postives = 85/121 (70.25%), Query Frame = 3 
Query:  342 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + KL D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   39 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGC 158
The following BLAST results are available for this feature:
BLAST of FC931831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_ECO811.386e-2950.41NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB_ECO7I1.386e-2950.41NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB_ECO5E1.386e-2950.41NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB_ECO571.386e-2950.41NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB_ECO551.386e-2950.41NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB_ECO451.386e-2950.41NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB_ECO271.386e-2950.41NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB_ECO241.386e-2950.41NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB2_STRGG1.386e-2949.57NADH-quinone oxidoreductase subunit B 2 OS=Strepto... [more]
NUOB_SALTY2.364e-2950.41NADH-quinone oxidoreductase subunit B OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionC34201F08EF PostHarveN Citrus clementina cDNA clone C34201F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931831 ID=FC931831; Name=FC931831; organism=Citrus clementina; type=EST; length=701bp
GGTAACCACCACTTTCAAACCCCAACAACAATCAATTTCTCTCTCGCTTT
GCCCCCGTGTGAGAAAACTAAACCAAACCAAACCAAACCCCACCCCACAA
CCCCCAAAACACAAGCCCAAAAAAAAAAAAAAAAACTATGGCGGTACTCA
CCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGCAACGCGCCGCC
TGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTC
CTCCTTCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCCACCGCCCTCGA
CCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCGTGATCTCTAAA
TTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATCTGGCCCATGTC
CTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACACCGGTGCTGCTC
GTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCAGCCCTCGCCAA
TCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAGATGGCCCCTGC
CCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTGGGTCATTTCTA
TGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACTCTTACTCTGTT
GTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTATGTTCCGGGCTG
C
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