FC931831

Overview
NameFC931831
Unique NameFC931831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK_SYNS9 (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain CC9902) GN=ndhK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28
Identity = 54/122 (44.26%), Postives = 85/122 (69.67%), Query Frame = 3 
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   35 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGC 156
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK_SYNR3 (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain RCC307) GN=ndhK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28
Identity = 54/122 (44.26%), Postives = 85/122 (69.67%), Query Frame = 3 
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   34 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGC 155
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK_SYNPX (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain WH8102) GN=ndhK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28
Identity = 54/122 (44.26%), Postives = 85/122 (69.67%), Query Frame = 3 
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   37 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYMPGC 158
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK_SYNPW (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain WH7803) GN=ndhK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28
Identity = 54/122 (44.26%), Postives = 85/122 (69.67%), Query Frame = 3 
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   41 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYMPGC 162
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK_PROMT (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain NATL2A) GN=ndhK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28
Identity = 54/122 (44.26%), Postives = 85/122 (69.67%), Query Frame = 3 
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ L+D+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMPDP++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   40 ILTSLEDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGC 161
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK_PROMS (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain AS9601) GN=ndhK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28
Identity = 54/122 (44.26%), Postives = 85/122 (69.67%), Query Frame = 3 
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   35 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGC 156
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK_PROMM (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9313) GN=ndhK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28
Identity = 54/122 (44.26%), Postives = 85/122 (69.67%), Query Frame = 3 
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   35 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGC 156
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK_PROM9 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9312) GN=ndhK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28
Identity = 54/122 (44.26%), Postives = 85/122 (69.67%), Query Frame = 3 
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   35 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGC 156
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK_PROM2 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9215) GN=ndhK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28
Identity = 54/122 (44.26%), Postives = 85/122 (69.67%), Query Frame = 3 
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   35 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGC 156
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK_PROM1 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain NATL1A) GN=ndhK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28
Identity = 54/122 (44.26%), Postives = 85/122 (69.67%), Query Frame = 3 
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ L+D+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMPDP++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   40 ILTSLEDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGC 161
The following BLAST results are available for this feature:
BLAST of FC931831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDHK_SYNS92.001e-2844.26NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_SYNR32.001e-2844.26NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_SYNPX2.001e-2844.26NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_SYNPW2.001e-2844.26NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_PROMT2.001e-2844.26NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROMS2.001e-2844.26NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROMM2.001e-2844.26NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROM92.001e-2844.26NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROM22.001e-2844.26NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROM12.001e-2844.26NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionC34201F08EF PostHarveN Citrus clementina cDNA clone C34201F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931831 ID=FC931831; Name=FC931831; organism=Citrus clementina; type=EST; length=701bp
GGTAACCACCACTTTCAAACCCCAACAACAATCAATTTCTCTCTCGCTTT
GCCCCCGTGTGAGAAAACTAAACCAAACCAAACCAAACCCCACCCCACAA
CCCCCAAAACACAAGCCCAAAAAAAAAAAAAAAAACTATGGCGGTACTCA
CCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGCAACGCGCCGCC
TGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTC
CTCCTTCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCCACCGCCCTCGA
CCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCGTGATCTCTAAA
TTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATCTGGCCCATGTC
CTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACACCGGTGCTGCTC
GTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCAGCCCTCGCCAA
TCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAGATGGCCCCTGC
CCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTGGGTCATTTCTA
TGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACTCTTACTCTGTT
GTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTATGTTCCGGGCTG
C
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