FC931831

Overview
NameFC931831
Unique NameFC931831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB1_NITOC (NADH-quinone oxidoreductase subunit B 1 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.822e-28
Identity = 56/122 (45.90%), Postives = 87/122 (71.31%), Query Frame = 3
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + ++L D+V + R+ S+WP +FGL+CC VEM+ +  ++YD+ RFG  + R +PR++D+MV++GT+  KMAP ++++Y+QM +PRWVISMGSCAN               D+ +PVD+YVPGC
Sbjct:   30 LFAQLQDLVAWGRKNSLWPYNFGLSCCYVEMVTSFTSKYDIARFGAEVIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGC 150          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK_SYNS3 (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain CC9311) GN=ndhK PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.822e-28
Identity = 53/122 (43.44%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KM PAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   43 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMGPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGC 164          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK_CYAA5 (NAD(P)H-quinone oxidoreductase subunit K OS=Cyanothece sp. (strain ATCC 51142) GN=ndhK PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.822e-28
Identity = 52/122 (42.62%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ +DD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++ AGT+T KMAPAL ++Y++MPDP++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   38 ILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPDPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGC 159          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK1_CYAP4 (NAD(P)H-quinone oxidoreductase subunit K 1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndhK1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.822e-28
Identity = 54/122 (44.26%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ L+DV ++ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++ AGT+T KMAPAL K+Y+QMP+P++VI+MG+C                  D+++PVDIY+PGC
Sbjct:   29 ILTSLNDVYSWCRLSSLWPLMYGTACCFIEFAAMIGSRFDFDRFGLVPRCSPRQADLLITAGTITMKMAPALVKLYEQMPEPKYVIAMGACTITGGMFSTDSPTAVRGVDKLIPVDIYLPGC 150          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUBCD_PELCD (NADH-quinone oxidoreductase subunit B/C/D OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=nuoBCD PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.604e-28
Identity = 56/122 (45.90%), Postives = 86/122 (70.49%), Query Frame = 3
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ LDD +N+ R+ S+WPM FGL+CC VEMM +   R+DL RFG  + R +PR++D+MV+AGT   KMA ++ +VY++M +P+WVI+MGSCAN               ++++PVD+Y+PGC
Sbjct:   10 ILTTLDDAINWGRKNSMWPMFFGLSCCFVEMMGSMTPRFDLARFGAEVLRGTPREADLMVIAGTPFKKMAASMLRVYEEMANPKWVIAMGSCAN-SGGMYDVYSVMQGVNQVLPVDVYIPGC 130          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_ENTS8 (NADH-quinone oxidoreductase subunit B OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=nuoB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 59/118 (50.00%), Postives = 82/118 (69.49%), Query Frame = 3
Query:  351 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            L D+VN+ R+ S+WP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   46 LHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTPFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFLPVDVYIPGC 162          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_EDWI9 (NADH-quinone oxidoreductase subunit B OS=Edwardsiella ictaluri (strain 93-146) GN=nuoB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 58/118 (49.15%), Postives = 82/118 (69.49%), Query Frame = 3
Query:  351 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            L D+VN+ R+ S+WP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++Y+QM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   46 LHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGC 162          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_DESRM (NADH-quinone oxidoreductase subunit B OS=Desulfotomaculum reducens (strain MI-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 59/132 (44.70%), Postives = 87/132 (65.91%), Query Frame = 3
Query:  312 GGISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVE-MMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            G +++T    +  L+ ++N  R  S+WPM FGLACCA+E +M    AR+DL RFG  + R SPRQ+DVM+V GT+T K AP + ++Y+QM +P++VI+MGSCA                D+++PVD+Y+PGC
Sbjct:   37 GEVARTVS--VGPLEKLLNLARANSLWPMGFGLACCAIEGLMAANMARFDLARFGYEVMRASPRQADVMLVCGTVTKKAAPFVVRLYEQMAEPKYVIAMGSCAISGGPFVDSYSVVPGVDKLIPVDVYIPGC 166          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK_SYNP2 (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 52/122 (42.62%), Postives = 85/122 (69.67%), Query Frame = 3
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ +DD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y++MP+P++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   34 ILTTVDDLYNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLILVAGTVTMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDLYIPGC 155          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK_ANAVT (NAD(P)H-quinone oxidoreductase subunit K OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhK PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 53/122 (43.44%), Postives = 83/122 (68.03%), Query Frame = 3
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ +DD+ N+ R  S+WP+ FG ACC +E      +R+D DRFG+I R SPRQ+D+++ AGT+T KMAP L ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   33 ILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGC 154          
The following BLAST results are available for this feature:
BLAST of FC931831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB1_NITOC5.822e-2845.90NADH-quinone oxidoreductase subunit B 1 OS=Nitroso... [more]
NDHK_SYNS35.822e-2843.44NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_CYAA55.822e-2842.62NAD(P)H-quinone oxidoreductase subunit K OS=Cyanot... [more]
NDHK1_CYAP45.822e-2844.26NAD(P)H-quinone oxidoreductase subunit K 1 OS=Cyan... [more]
NUBCD_PELCD7.604e-2845.90NADH-quinone oxidoreductase subunit B/C/D OS=Pelob... [more]
NUOB_ENTS89.931e-2850.00NADH-quinone oxidoreductase subunit B OS=Enterobac... [more]
NUOB_EDWI99.931e-2849.15NADH-quinone oxidoreductase subunit B OS=Edwardsie... [more]
NUOB_DESRM9.931e-2844.70NADH-quinone oxidoreductase subunit B OS=Desulfoto... [more]
NDHK_SYNP29.931e-2842.62NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_ANAVT9.931e-2843.44NAD(P)H-quinone oxidoreductase subunit K OS=Anabae... [more]

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Properties
Property NameValue
Genbank descriptionC34201F08EF PostHarveN Citrus clementina cDNA clone C34201F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931831 ID=FC931831; Name=FC931831; organism=Citrus clementina; type=EST; length=701bp
GGTAACCACCACTTTCAAACCCCAACAACAATCAATTTCTCTCTCGCTTT
GCCCCCGTGTGAGAAAACTAAACCAAACCAAACCAAACCCCACCCCACAA
CCCCCAAAACACAAGCCCAAAAAAAAAAAAAAAAACTATGGCGGTACTCA
CCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGCAACGCGCCGCC
TGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTC
CTCCTTCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCCACCGCCCTCGA
CCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCGTGATCTCTAAA
TTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATCTGGCCCATGTC
CTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACACCGGTGCTGCTC
GTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCAGCCCTCGCCAA
TCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAGATGGCCCCTGC
CCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTGGGTCATTTCTA
TGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACTCTTACTCTGTT
GTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTATGTTCCGGGCTG
C
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