FC931831

Overview
NameFC931831
Unique NameFC931831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK_ANASP (NAD(P)H-quinone oxidoreductase subunit K OS=Anabaena sp. (strain PCC 7120) GN=ndhK PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 53/122 (43.44%), Postives = 83/122 (68.03%), Query Frame = 3
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ +DD+ N+ R  S+WP+ FG ACC +E      +R+D DRFG+I R SPRQ+D+++ AGT+T KMAP L ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   33 ILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGC 154          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_PSYWF (NADH-quinone oxidoreductase subunit B OS=Psychrobacter sp. (strain PRwf-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 62/125 (49.60%), Postives = 84/125 (67.20%), Query Frame = 3
Query:  342 ISKLDDVV----NYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + KL+D+V    N+ R+ S+WP +FG +CC VE   T  A +DL RFG  + R SPRQ+DVM+VAGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+I+PVD+YVPGC
Sbjct:   37 MGKLEDMVHASANWGRKNSLWPFNFGTSCCYVEYATTLTAVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKIIPVDVYVPGC 160          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_ERWT9 (NADH-quinone oxidoreductase subunit B OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=nuoB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 59/118 (50.00%), Postives = 81/118 (68.64%), Query Frame = 3
Query:  351 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            L D+VN+ R+ S+WP +FGL+CC VEM  +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   46 LHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADFMVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFLPVDVYIPGC 162          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_ARCB4 (NADH-quinone oxidoreductase subunit B OS=Arcobacter butzleri (strain RM4018) GN=nuoB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            V ++LD  VN+ R  S+WPM+FG ACC +E M    A+YD+ RFG  + R SPRQ+D+++VAGT++ K AP L+K+Y+QM +P+WVISMG+CA                D I+PVD YV GC
Sbjct:   14 VTTRLDHAVNWGRSYSLWPMAFGTACCGIEFMAVAGAKYDVSRFGAEVVRFSPRQADLLIVAGTISYKQAPILKKIYEQMCEPKWVISMGACA-CSGGFYDNYTTVQGIDEIIPVDEYVAGC 134          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK1_GLOVI (NAD(P)H-quinone oxidoreductase subunit K 1 OS=Gloeobacter violaceus GN=ndhK1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 53/126 (42.06%), Postives = 84/126 (66.67%), Query Frame = 3
Query:  327 TAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            T   V++ L+D+ N+ R  S+WP+ +G +CC +E      +R+D DRFG++ R SPRQ+D+++ AGT+T KMAPAL  +Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   20 TNNVVLTTLNDLYNWARLSSVWPLMYGTSCCFIEFAGLIGSRFDFDRFGLVPRASPRQADLIITAGTVTMKMAPALVTLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDKLIPVDVYIPGC 145          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK1_ACAM1 (NAD(P)H-quinone oxidoreductase subunit K 1 OS=Acaryochloris marina (strain MBIC 11017) GN=ndhK1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 52/122 (42.62%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            ++S + D+ ++ R  S+WP+ +G ACC +E+     +R+D DRFG++ R SPRQ+D+++ AGT+T KMAPAL ++Y+QMPDP++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   24 ILSSVSDLYDWARLSSLWPLMYGTACCFIEIAAMIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYLPGC 145          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_FLAPJ (NADH-quinone oxidoreductase subunit B OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=nuoB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27
Identity = 59/125 (47.20%), Postives = 84/125 (67.20%), Query Frame = 3
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFG---IIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F  +KL+DVV   R  S+WP+ F  +CC +E M T A+ YDL RFG   + F  SPRQ+D+++V GT++ KMAP LR+VY+QM +PRWVI++G+CA+               D+++PVD+YVPGC
Sbjct:   19 FFATKLNDVVGLARANSMWPLPFATSCCGIEFMATMASHYDLARFGSERVSF--SPRQADMLMVMGTISKKMAPILRQVYEQMAEPRWVIAVGACAS-SGGIFDTYSVLQGIDKVIPVDVYVPGC 140          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK_CYAP8 (NAD(P)H-quinone oxidoreductase subunit K OS=Cyanothece sp. (strain PCC 8801) GN=ndhK PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27
Identity = 51/122 (41.80%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ +DD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++ AGT+T KMAPAL ++Y++MP+P++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   38 ILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGC 159          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDHK1_SYNY3 (NAD(P)H-quinone oxidoreductase subunit K 1 OS=Synechocystis sp. (strain PCC 6803) GN=ndhK1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.212e-27
Identity = 50/122 (40.98%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +++ +DD+ N+ +  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++ AGT+T KMAPAL ++Y++MP+P++VI+MG+C                  D+++PVD+Y+PGC
Sbjct:   37 ILTTVDDLYNWAKLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGC 158          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_YERPY (NADH-quinone oxidoreductase subunit B OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=nuoB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 57/118 (48.31%), Postives = 82/118 (69.49%), Query Frame = 3
Query:  351 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + D+VN+ R+ S+WP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++Y+QM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   47 MHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFLPVDVYIPGC 163          
The following BLAST results are available for this feature:
BLAST of FC931831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDHK_ANASP9.931e-2843.44NAD(P)H-quinone oxidoreductase subunit K OS=Anabae... [more]
NUOB_PSYWF1.297e-2749.60NADH-quinone oxidoreductase subunit B OS=Psychroba... [more]
NUOB_ERWT91.297e-2750.00NADH-quinone oxidoreductase subunit B OS=Erwinia t... [more]
NUOB_ARCB41.297e-2748.36NADH-quinone oxidoreductase subunit B OS=Arcobacte... [more]
NDHK1_GLOVI1.297e-2742.06NAD(P)H-quinone oxidoreductase subunit K 1 OS=Gloe... [more]
NDHK1_ACAM11.297e-2742.62NAD(P)H-quinone oxidoreductase subunit K 1 OS=Acar... [more]
NUOB_FLAPJ1.694e-2747.20NADH-quinone oxidoreductase subunit B OS=Flavobact... [more]
NDHK_CYAP81.694e-2741.80NAD(P)H-quinone oxidoreductase subunit K OS=Cyanot... [more]
NDHK1_SYNY32.212e-2740.98NAD(P)H-quinone oxidoreductase subunit K 1 OS=Syne... [more]
NUOB_YERPY2.890e-2748.31NADH-quinone oxidoreductase subunit B OS=Yersinia ... [more]

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Properties
Property NameValue
Genbank descriptionC34201F08EF PostHarveN Citrus clementina cDNA clone C34201F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931831 ID=FC931831; Name=FC931831; organism=Citrus clementina; type=EST; length=701bp
GGTAACCACCACTTTCAAACCCCAACAACAATCAATTTCTCTCTCGCTTT
GCCCCCGTGTGAGAAAACTAAACCAAACCAAACCAAACCCCACCCCACAA
CCCCCAAAACACAAGCCCAAAAAAAAAAAAAAAAACTATGGCGGTACTCA
CCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGCAACGCGCCGCC
TGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTC
CTCCTTCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCCACCGCCCTCGA
CCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCGTGATCTCTAAA
TTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATCTGGCCCATGTC
CTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACACCGGTGCTGCTC
GTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCAGCCCTCGCCAA
TCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAGATGGCCCCTGC
CCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTGGGTCATTTCTA
TGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACTCTTACTCTGTT
GTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTATGTTCCGGGCTG
C
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