FC931831

Overview
NameFC931831
Unique NameFC931831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_YERPS (NADH-quinone oxidoreductase subunit B OS=Yersinia pseudotuberculosis GN=nuoB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 57/118 (48.31%), Postives = 82/118 (69.49%), Query Frame = 3 
Query:  351 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + D+VN+ R+ S+WP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++Y+QM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   47 MHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFLPVDVYIPGC 163
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_YERPP (NADH-quinone oxidoreductase subunit B OS=Yersinia pestis (strain Pestoides F) GN=nuoB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 57/118 (48.31%), Postives = 82/118 (69.49%), Query Frame = 3 
Query:  351 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + D+VN+ R+ S+WP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++Y+QM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   47 MHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFLPVDVYIPGC 163
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_YERPN (NADH-quinone oxidoreductase subunit B OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=nuoB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 57/118 (48.31%), Postives = 82/118 (69.49%), Query Frame = 3 
Query:  351 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + D+VN+ R+ S+WP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++Y+QM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   47 MHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFLPVDVYIPGC 163
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_YERPG (NADH-quinone oxidoreductase subunit B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=nuoB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 57/118 (48.31%), Postives = 82/118 (69.49%), Query Frame = 3 
Query:  351 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + D+VN+ R+ S+WP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++Y+QM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   47 MHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFLPVDVYIPGC 163
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_YERPE (NADH-quinone oxidoreductase subunit B OS=Yersinia pestis GN=nuoB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 57/118 (48.31%), Postives = 82/118 (69.49%), Query Frame = 3 
Query:  351 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + D+VN+ R+ S+WP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++Y+QM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   47 MHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFLPVDVYIPGC 163
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_YERPB (NADH-quinone oxidoreductase subunit B OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=nuoB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 57/118 (48.31%), Postives = 82/118 (69.49%), Query Frame = 3 
Query:  351 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + D+VN+ R+ S+WP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++Y+QM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   47 MHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFLPVDVYIPGC 163
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_YERPA (NADH-quinone oxidoreductase subunit B OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=nuoB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 57/118 (48.31%), Postives = 82/118 (69.49%), Query Frame = 3 
Query:  351 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + D+VN+ R+ S+WP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++Y+QM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   47 MHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFLPVDVYIPGC 163
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_YERP3 (NADH-quinone oxidoreductase subunit B OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=nuoB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 57/118 (48.31%), Postives = 82/118 (69.49%), Query Frame = 3 
Query:  351 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + D+VN+ R+ S+WP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++Y+QM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   47 MHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFLPVDVYIPGC 163
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_YERE8 (NADH-quinone oxidoreductase subunit B OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=nuoB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 57/118 (48.31%), Postives = 82/118 (69.49%), Query Frame = 3 
Query:  351 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            + D+VN+ R+ S+WP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++Y+QM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   47 MHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFLPVDVYIPGC 163
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_PECCP (NADH-quinone oxidoreductase subunit B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 58/118 (49.15%), Postives = 81/118 (68.64%), Query Frame = 3 
Query:  351 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            L D VN+ R+ S+WP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++Y+QM +P+WVISMG+CAN               D+ +PVD+Y+PGC
Sbjct:   46 LHDTVNWGRQNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFLPVDVYIPGC 162
The following BLAST results are available for this feature:
BLAST of FC931831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_YERPS2.890e-2748.31NADH-quinone oxidoreductase subunit B OS=Yersinia ... [more]
NUOB_YERPP2.890e-2748.31NADH-quinone oxidoreductase subunit B OS=Yersinia ... [more]
NUOB_YERPN2.890e-2748.31NADH-quinone oxidoreductase subunit B OS=Yersinia ... [more]
NUOB_YERPG2.890e-2748.31NADH-quinone oxidoreductase subunit B OS=Yersinia ... [more]
NUOB_YERPE2.890e-2748.31NADH-quinone oxidoreductase subunit B OS=Yersinia ... [more]
NUOB_YERPB2.890e-2748.31NADH-quinone oxidoreductase subunit B OS=Yersinia ... [more]
NUOB_YERPA2.890e-2748.31NADH-quinone oxidoreductase subunit B OS=Yersinia ... [more]
NUOB_YERP32.890e-2748.31NADH-quinone oxidoreductase subunit B OS=Yersinia ... [more]
NUOB_YERE82.890e-2748.31NADH-quinone oxidoreductase subunit B OS=Yersinia ... [more]
NUOB_PECCP2.890e-2749.15NADH-quinone oxidoreductase subunit B OS=Pectobact... [more]

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Properties
Property NameValue
Genbank descriptionC34201F08EF PostHarveN Citrus clementina cDNA clone C34201F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931831 ID=FC931831; Name=FC931831; organism=Citrus clementina; type=EST; length=701bp
GGTAACCACCACTTTCAAACCCCAACAACAATCAATTTCTCTCTCGCTTT
GCCCCCGTGTGAGAAAACTAAACCAAACCAAACCAAACCCCACCCCACAA
CCCCCAAAACACAAGCCCAAAAAAAAAAAAAAAAACTATGGCGGTACTCA
CCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGCAACGCGCCGCC
TGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTC
CTCCTTCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCCACCGCCCTCGA
CCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCGTGATCTCTAAA
TTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATCTGGCCCATGTC
CTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACACCGGTGCTGCTC
GTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCAGCCCTCGCCAA
TCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAGATGGCCCCTGC
CCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTGGGTCATTTCTA
TGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACTCTTACTCTGTT
GTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTATGTTCCGGGCTG
C
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