FC931831

Overview
NameFC931831
Unique NameFC931831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_XANAC (NADH-quinone oxidoreductase subunit B OS=Xanthomonas axonopodis pv. citri GN=nuoB PE=3 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 6.615e-48
Identity = 86/122 (70.49%), Postives = 100/122 (81.97%), Query Frame = 3
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGC
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 158          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_BORA1 (NADH-quinone oxidoreductase subunit B OS=Bordetella avium (strain 197N) GN=nuoB PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.640e-48
Identity = 85/122 (69.67%), Postives = 98/122 (80.33%), Query Frame = 3
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+ +  D  +N+ + GS+WPM+FGLACCAVEMMH GAARYDLD+FGIIFRPSPRQSD+M+VAGTL NKM PALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   11 FITTSADKFINWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 132          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB2_NITOC (NADH-quinone oxidoreductase subunit B 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.640e-48
Identity = 87/121 (71.90%), Postives = 98/121 (80.99%), Query Frame = 3
Query:  339 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            V +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYD+DRFG+IFRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGC
Sbjct:   12 VTTTADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDMDRFGVIFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 132          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_POLNA (NADH-quinone oxidoreductase subunit B OS=Polaromonas naphthalenivorans (strain CJ2) GN=nuoB PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.128e-47
Identity = 86/122 (70.49%), Postives = 98/122 (80.33%), Query Frame = 3
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV +  D VVN+ + GS+WPM+FGLACCAVEMMH GAARYD+DRFG++FRPSPRQSD+M+VAGTL NKM PALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGC
Sbjct:   11 FVTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 132          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_NEOSM (NADH-quinone oxidoreductase subunit B OS=Neorickettsia sennetsu (strain Miyayama) GN=nuoB PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.128e-47
Identity = 85/122 (69.67%), Postives = 103/122 (84.43%), Query Frame = 3
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            ++++KLDD++N+ R GS+WPM+FGLACCAVEMMH  A+RYD+DRFG+IFRPSPRQSDVM+VAGTLTNKMAPALR+VYDQM +P++VISMGSCAN              CDRIVPVD+YVPGC
Sbjct:   19 YLVAKLDDLINWARSGSLWPMTFGLACCAVEMMHFTASRYDMDRFGMIFRPSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 140          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_BORPE (NADH-quinone oxidoreductase subunit B OS=Bordetella pertussis GN=nuoB PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.474e-47
Identity = 85/122 (69.67%), Postives = 98/122 (80.33%), Query Frame = 3
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+ +  D  +N+ + GS+WPM+FGLACCAVEMMH GAARYDLD+FGIIFRPSPRQSD+M+VAGTL NKM PALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   11 FITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 132          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_BORPA (NADH-quinone oxidoreductase subunit B OS=Bordetella parapertussis GN=nuoB PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.474e-47
Identity = 85/122 (69.67%), Postives = 98/122 (80.33%), Query Frame = 3
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+ +  D  +N+ + GS+WPM+FGLACCAVEMMH GAARYDLD+FGIIFRPSPRQSD+M+VAGTL NKM PALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   11 FITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 132          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_BORBR (NADH-quinone oxidoreductase subunit B OS=Bordetella bronchiseptica GN=nuoB PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.474e-47
Identity = 85/122 (69.67%), Postives = 98/122 (80.33%), Query Frame = 3
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+ +  D  +N+ + GS+WPM+FGLACCAVEMMH GAARYDLD+FGIIFRPSPRQSD+M+VAGTL NKM PALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   11 FITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 132          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_HALHL (NADH-quinone oxidoreductase subunit B OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.514e-47
Identity = 86/122 (70.49%), Postives = 98/122 (80.33%), Query Frame = 3
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            +V +  D ++N+ R GS+WPM+FGLACCAVEMMHT A RYD+DR G+IFRPSPRQSDVM+VAGTL NKMAPALRKVYDQMP+P+WVISMGSCAN              CDRIVPVDIYVPGC
Sbjct:   11 YVTTSADKLINWARTGSLWPMTFGLACCAVEMMHTAAGRYDMDRNGLIFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGC 132          
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NDUS7_NEUCR (NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial OS=Neurospora crassa GN=G17A4.170 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.283e-47
Identity = 87/129 (67.44%), Postives = 98/129 (75.97%), Query Frame = 3
Query:  315 GISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            G     ++ ++ LD +VN+ R+ S+WPM+FGLACCAVEMMH    RYD DR GIIFR SPRQSDVM+VAGTLTNKMAPALR+VYDQMPDPRWVISMGSCAN              CDRIVPVDIYVPGC
Sbjct:   68 GTKGAVQYALTTLDSIVNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 196          
The following BLAST results are available for this feature:
BLAST of FC931831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_XANAC6.615e-4870.49NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_BORA18.640e-4869.67NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NUOB2_NITOC8.640e-4871.90NADH-quinone oxidoreductase subunit B 2 OS=Nitroso... [more]
NUOB_POLNA1.128e-4770.49NADH-quinone oxidoreductase subunit B OS=Polaromon... [more]
NUOB_NEOSM1.128e-4769.67NADH-quinone oxidoreductase subunit B OS=Neoricket... [more]
NUOB_BORPE1.474e-4769.67NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NUOB_BORPA1.474e-4769.67NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NUOB_BORBR1.474e-4769.67NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NUOB_HALHL2.514e-4770.49NADH-quinone oxidoreductase subunit B OS=Halorhodo... [more]
NDUS7_NEUCR3.283e-4767.44NADH-ubiquinone oxidoreductase 19.3 kDa subunit, m... [more]

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Properties
Property NameValue
Genbank descriptionC34201F08EF PostHarveN Citrus clementina cDNA clone C34201F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931831 ID=FC931831; Name=FC931831; organism=Citrus clementina; type=EST; length=701bp
GGTAACCACCACTTTCAAACCCCAACAACAATCAATTTCTCTCTCGCTTT
GCCCCCGTGTGAGAAAACTAAACCAAACCAAACCAAACCCCACCCCACAA
CCCCCAAAACACAAGCCCAAAAAAAAAAAAAAAAACTATGGCGGTACTCA
CCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGCAACGCGCCGCC
TGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTC
CTCCTTCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCCACCGCCCTCGA
CCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCGTGATCTCTAAA
TTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATCTGGCCCATGTC
CTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACACCGGTGCTGCTC
GTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCAGCCCTCGCCAA
TCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAGATGGCCCCTGC
CCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTGGGTCATTTCTA
TGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACTCTTACTCTGTT
GTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTATGTTCCGGGCTG
C
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