FC931833

Overview
NameFC931833
Unique NameFC931833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_XYLF2 (Probable ubiquinone biosynthesis protein ubiB OS=Xylella fastidiosa (strain M23) GN=ubiB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.407e-22
Identity = 62/223 (27.80%), Postives = 110/223 (49.33%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA------LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAP 656
            NA   RR +     + VP V W +TA +VLTLE + G+  +++  LD  G +R  ++ + I  +  Q+ +  FFHAD H GN+ VD D A       I  DFG+MG++    +  L + F A++ KD +++ +  ++   + P   +  +  + +   +   ++ P  Q +LA +   LF +A+            + +    +EG+G  LDP+  +  VA P
Sbjct:  208 NASVLRRFWEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPPHVRIEELEAAARSVCEPYFTR-PLSQISLAEVMMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARP 429
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_BURPS (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia pseudomallei GN=ubiB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.401e-22
Identity = 63/228 (27.63%), Postives = 111/228 (48.68%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            N  + RR+F  +  + VP +FWDY+   VL +E + GV I+++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD       I  DFG++G +  F +  L   F A +++D  +V    ++   + P   +    S++R   + + D  L     +  +L  +   LF+ ++            + +    +EG+G  LDP+  L + A PY +
Sbjct:  209 NGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_BURP6 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia pseudomallei (strain 668) GN=ubiB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.401e-22
Identity = 63/228 (27.63%), Postives = 111/228 (48.68%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            N  + RR+F  +  + VP +FWDY+   VL +E + GV I+++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD       I  DFG++G +  F +  L   F A +++D  +V    ++   + P   +    S++R   + + D  L     +  +L  +   LF+ ++            + +    +EG+G  LDP+  L + A PY +
Sbjct:  209 NGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_BURP1 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.401e-22
Identity = 63/228 (27.63%), Postives = 111/228 (48.68%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            N  + RR+F  +  + VP +FWDY+   VL +E + GV I+++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD       I  DFG++G +  F +  L   F A +++D  +V    ++   + P   +    S++R   + + D  L     +  +L  +   LF+ ++            + +    +EG+G  LDP+  L + A PY +
Sbjct:  209 NGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_BURP0 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.401e-22
Identity = 63/228 (27.63%), Postives = 111/228 (48.68%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            N  + RR+F  +  + VP +FWDY+   VL +E + GV I+++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD       I  DFG++G +  F +  L   F A +++D  +V    ++   + P   +    S++R   + + D  L     +  +L  +   LF+ ++            + +    +EG+G  LDP+  L + A PY +
Sbjct:  209 NGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_BURMS (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia mallei (strain SAVP1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.401e-22
Identity = 63/228 (27.63%), Postives = 111/228 (48.68%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            N  + RR+F  +  + VP +FWDY+   VL +E + GV I+++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD       I  DFG++G +  F +  L   F A +++D  +V    ++   + P   +    S++R   + + D  L     +  +L  +   LF+ ++            + +    +EG+G  LDP+  L + A PY +
Sbjct:  209 NGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_BURMA (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia mallei GN=ubiB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.401e-22
Identity = 63/228 (27.63%), Postives = 111/228 (48.68%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            N  + RR+F  +  + VP +FWDY+   VL +E + GV I+++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD       I  DFG++G +  F +  L   F A +++D  +V    ++   + P   +    S++R   + + D  L     +  +L  +   LF+ ++            + +    +EG+G  LDP+  L + A PY +
Sbjct:  209 NGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_BURM9 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.401e-22
Identity = 63/228 (27.63%), Postives = 111/228 (48.68%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            N  + RR+F  +  + VP +FWDY+   VL +E + GV I+++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD       I  DFG++G +  F +  L   F A +++D  +V    ++   + P   +    S++R   + + D  L     +  +L  +   LF+ ++            + +    +EG+G  LDP+  L + A PY +
Sbjct:  209 NGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_BURM7 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.401e-22
Identity = 63/228 (27.63%), Postives = 111/228 (48.68%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            N  + RR+F  +  + VP +FWDY+   VL +E + GV I+++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD       I  DFG++G +  F +  L   F A +++D  +V    ++   + P   +    S++R   + + D  L     +  +L  +   LF+ ++            + +    +EG+G  LDP+  L + A PY +
Sbjct:  209 NGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_XYLFA (Probable ubiquinone biosynthesis protein ubiB OS=Xylella fastidiosa GN=ubiB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.135e-22
Identity = 62/223 (27.80%), Postives = 110/223 (49.33%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA------LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAP 656
            NA   RR +     + VP V W +TA +VLTLE + G+  +++  LD  G +R  ++ + I  +  Q+ +  FFHAD H GN+ VD D A       I  DFG+MG++    +  L + F A++ KD +++ +  ++   + P   +  +  + +   +   ++ P  Q +LA +   LF +A+            + +    +EG+G  LDP+  +  VA P
Sbjct:  208 NASVLRRFWEASDDIYVPEVIWSHTAEQVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPPHVRIEELEAAARSVCEPYFTR-PLSQISLAEVLMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARP 429
The following BLAST results are available for this feature:
BLAST of FC931833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
UBIB_XYLF21.407e-2227.80Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_BURPS2.401e-2227.63Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURP62.401e-2227.63Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURP12.401e-2227.63Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURP02.401e-2227.63Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURMS2.401e-2227.63Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURMA2.401e-2227.63Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURM92.401e-2227.63Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURM72.401e-2227.63Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_XYLFA3.135e-2227.80Probable ubiquinone biosynthesis protein ubiB OS=X... [more]

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Properties
Property NameValue
Genbank descriptionC34201F10EF PostHarveN Citrus clementina cDNA clone C34201F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931833 ID=FC931833; Name=FC931833; organism=Citrus clementina; type=EST; length=750bp
GAAAAAATGCTGATAGATTCCGTCGAGATTTTCGGAATATAAAGTGGGTC
CGGGTACCTCTGGTGTTTTGGGATTATACTGCTACAAAGGTGTTGACATT
GGAGTATGTACCAGGAGTTAAGATCAATGAGTTGAAAGCACTAGATTTGC
AGGGTTATAATCGTTCTCAAATTGCACCGCGTGCAATTGAAGCGTACTTG
AATCAGATACTCAAAACTGGTTTCTTTCATGCTGATCCTCATCCTGGAAA
TCTTGCTGTCGATTTAGATGAAGCACTCATCTATTATGATTTTGGTATGA
TGGGGGAGATTAAATCCTTTACCCGTGAAAGATTGCTTGATCTTTTCTAT
GCAGTTTATGAGAAAGATGCCAAAAAGGTTATCCAAAGGTTGATTGATCT
CGAAGCACTTCAACCCACAGGAGATATGTCATCGGTAAGGAGATCCGTGC
AATTTTTCTTGGACAATTTGCTAAGCCAGAGTCCAGATCAGCAGCAGACT
TTGGCTGCAATTGGAGAGGATTTGTTTGCAATAGCTCAAGATCAACCATT
TCGGTTTCCATCCACCTTTACTTTCGTTATAAGGGCATTCTCCACACTTG
AAGGTATCGGCAACATTCTTGACCCAGATTTTTCCCTTTGTGAGGTTGCT
GCACCTTATGCACAGGAGCTATTGGATTTAAACAGCAGCAGCAGTCTGGA
ACACAGCTAGTGGAGCAAATCAGAAACAGCTGATGATGCAGATCTTCGAC
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