FC931833

Overview
NameFC931833
Unique NameFC931833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_PECCP (Probable ubiquinone biosynthesis protein ubiB OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.780e-17
Identity = 52/224 (23.21%), Postives = 107/224 (47.77%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F N   + VP ++ DY +  +L +E + G+ ++++ AL   G +   +A R ++ +  Q+ +  FFHAD HPGN+ +      D   I  D G++G +    +  L + F A + +D +KV +  +D   +    +++    +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFENSPMLYVPEIYSDYCSEGMLVMERIYGIPVSDVDALKANGTDMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFISYEHPEDPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPADTNVADFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYIEGVGRQLYPQLDLWKTAKPFLE 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_ERWT9 (Probable ubiquinone biosynthesis protein ubiB OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ubiB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.780e-17
Identity = 53/224 (23.66%), Postives = 107/224 (47.77%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F + + + VP ++ DY +  +L +E + G+ I+++  L+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V      D   I  D G++G +    +  L + F A + +D +KV +  +D   +    ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  211 NAIQLRRNFADGQMLYVPEIYSDYCSENMLVMERIYGIPISDVATLEQHGVNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPEDPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPADTNVEDFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 433          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: Y647_MYCTU (Uncharacterized protein Rv0647c/MT0675 OS=Mycobacterium tuberculosis GN=Rv0647c PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17
Identity = 58/200 (29.00%), Postives = 99/200 (49.50%), Query Frame = 3
Query:   42 KWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYA-VYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSL 638
            K +RVP V WD+T  +VLT+E V G++I+   A+   G++  ++    + +     L+ G FH D H GNL VD    ++++DFG+MG I   TR  L +L YA + +KD     + ++ + A+      +   + ++ F   L  QS     + A IG  L A+A     + P     + + F  +E    +L P + +
Sbjct:  263 KNIRVPQVHWDFTTERVLTMERVHGIRIDNAAAIRKAGFDGVELVKALLFSVFEGGLRHGLFHGDLHAGNLYVDEAGRIVFFDFGIMGRIDPRTRWLLRELVYALLVKKDHAAAGKIVVLMGAVGTMKPETQAAKDLERFATPLTMQSLG-DMSYADIGRQLSALADAYDVKLPRELVLIGKQFLYVERYMKLLAPRWQM 461          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_SHISS (Probable ubiquinone biosynthesis protein ubiB OS=Shigella sonnei (strain Ss046) GN=ubiB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17
Identity = 51/224 (22.77%), Postives = 107/224 (47.77%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F +   + +P V+ DY +  ++ +E + G+ ++++  L+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVATLEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_SHEON (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella oneidensis GN=ubiB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17
Identity = 50/224 (22.32%), Postives = 108/224 (48.21%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + R +F +   + +P V+ ++   +++ +E + G+ ++++ AL  QG N   +A R +E +  Q+ +  FFHAD HPGN+ +  +       I  D G+MG +    +  L + F A + +D  ++ Q  I+   +    D+ +  ++++   + + ++ P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  211 NAIKLRNNFIDSDALYIPYVYEEFCYPRLMVMERIYGIPVSDIVALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRENPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKVVCEPMFNK-PLDEISFGHVLLELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQTAKPFLE 433          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_SHELP (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ubiB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17
Identity = 53/224 (23.66%), Postives = 109/224 (48.66%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + R +F +   + +P ++ ++  T+++ +E + GV +++  AL+ QG N   +A R +E +  Q+ +  FFHAD HPGN+ V      D   I  D G+MG +    +  L + F A + +D  ++ Q  I+   +    D+ +  ++++   + + ++ P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  211 NAIKLRNNFIDSGALYIPKMYEEFCFTRLIVMERIYGVPVSDRAALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGNIFVSTEHPEDPFYIGLDCGIMGTLTEQDKRYLAENFLAFFNRDYTRIAQLYIESGWVAADTDLVAFEQAIKVVCEPMFNK-PLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQTAKPFLE 433          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_ECOUT (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli (strain UTI89 / UPEC) GN=ubiB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17
Identity = 51/224 (22.77%), Postives = 107/224 (47.77%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F +   + +P V+ DY +  ++ +E + G+ ++++  L+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVATLEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_ECOSM (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ubiB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17
Identity = 51/224 (22.77%), Postives = 107/224 (47.77%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F +   + +P V+ DY +  ++ +E + G+ ++++  L+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVATLEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_ECOL6 (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli O6 GN=ubiB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17
Identity = 51/224 (22.77%), Postives = 107/224 (47.77%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F +   + +P V+ DY +  ++ +E + G+ ++++  L+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVATLEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_ECOL5 (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ubiB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17
Identity = 51/224 (22.77%), Postives = 107/224 (47.77%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F +   + +P V+ DY +  ++ +E + G+ ++++  L+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVATLEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434          
The following BLAST results are available for this feature:
BLAST of FC931833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
UBIB_PECCP1.780e-1723.21Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_ERWT91.780e-1723.66Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
Y647_MYCTU2.325e-1729.00Uncharacterized protein Rv0647c/MT0675 OS=Mycobact... [more]
UBIB_SHISS2.325e-1722.77Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHEON2.325e-1722.32Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHELP2.325e-1723.66Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_ECOUT2.325e-1722.77Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOSM2.325e-1722.77Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOL62.325e-1722.77Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOL52.325e-1722.77Probable ubiquinone biosynthesis protein ubiB OS=E... [more]

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Properties
Property NameValue
Genbank descriptionC34201F10EF PostHarveN Citrus clementina cDNA clone C34201F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931833 ID=FC931833; Name=FC931833; organism=Citrus clementina; type=EST; length=750bp
GAAAAAATGCTGATAGATTCCGTCGAGATTTTCGGAATATAAAGTGGGTC
CGGGTACCTCTGGTGTTTTGGGATTATACTGCTACAAAGGTGTTGACATT
GGAGTATGTACCAGGAGTTAAGATCAATGAGTTGAAAGCACTAGATTTGC
AGGGTTATAATCGTTCTCAAATTGCACCGCGTGCAATTGAAGCGTACTTG
AATCAGATACTCAAAACTGGTTTCTTTCATGCTGATCCTCATCCTGGAAA
TCTTGCTGTCGATTTAGATGAAGCACTCATCTATTATGATTTTGGTATGA
TGGGGGAGATTAAATCCTTTACCCGTGAAAGATTGCTTGATCTTTTCTAT
GCAGTTTATGAGAAAGATGCCAAAAAGGTTATCCAAAGGTTGATTGATCT
CGAAGCACTTCAACCCACAGGAGATATGTCATCGGTAAGGAGATCCGTGC
AATTTTTCTTGGACAATTTGCTAAGCCAGAGTCCAGATCAGCAGCAGACT
TTGGCTGCAATTGGAGAGGATTTGTTTGCAATAGCTCAAGATCAACCATT
TCGGTTTCCATCCACCTTTACTTTCGTTATAAGGGCATTCTCCACACTTG
AAGGTATCGGCAACATTCTTGACCCAGATTTTTCCCTTTGTGAGGTTGCT
GCACCTTATGCACAGGAGCTATTGGATTTAAACAGCAGCAGCAGTCTGGA
ACACAGCTAGTGGAGCAAATCAGAAACAGCTGATGATGCAGATCTTCGAC
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