FC931833

Overview
NameFC931833
Unique NameFC931833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_BURXL (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia xenovorans (strain LB400) GN=ubiB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.135e-22
Identity = 62/228 (27.19%), Postives = 113/228 (49.56%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            N  + RR+F  +  + VP ++W++    VL +E + GV I++++ L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD A     I  DFG++G +  F +  L   F A +++D  +V    ++   + PT  +    S++R   + + D  L     +  +L  +   LF+ ++            + +    +EG+G  LDP+  L + A PY +
Sbjct:  209 NGSQLRRNFAGLDLLLVPEMYWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPTTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_BURPP (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.135e-22
Identity = 62/228 (27.19%), Postives = 113/228 (49.56%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            N  + RR+F  +  + VP ++W++    VL +E + GV I++++ L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD A     I  DFG++G +  F +  L   F A +++D  +V    ++   + PT  +    S++R   + + D  L     +  +L  +   LF+ ++            + +    +EG+G  LDP+  L + A PY +
Sbjct:  209 NGSQLRRNFAGLDLLLVPEMYWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPTTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_BURP8 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.348e-22
Identity = 62/228 (27.19%), Postives = 112/228 (49.12%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            N  + RR+F  +  + VP ++W+Y    VL +E + GV I+++  L + G +  ++A   +E +  Q+ + GFFHAD HPGN+ V LD A     I  DFG++G +  F +  L   F A +++D  +V    ++   +  T  +    S++R   + + D  L     +  +L  +   LF+ ++            + +    +EG+G  LDP+  L + A PY +
Sbjct:  209 NGSQLRRNFAGLDLLLVPEMYWEYCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPATTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLE 431          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_DIAST (Probable ubiquinone biosynthesis protein ubiB OS=Diaphorobacter sp. (strain TPSY) GN=ubiB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.123e-22
Identity = 61/224 (27.23%), Postives = 111/224 (49.55%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+ + +  V +P VFWD+   +VL +E + GV IN+++ L   G +  ++A   +  +  Q+ + GFFHAD HPGN+ V L        I  DFG++G +  F +E L   F A + +D K+V +  I+   +     ++ +  +++   +    + P ++ +L  +   LF  ++            + +    +EG+G  LDPD  L   A P+ +
Sbjct:  210 NAAQLRRNMQGLDLVLIPEVFWDFCHAEVLVMERMKGVPINQVERLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWVPAHTRVNELEAAIRTVCEPYFDR-PLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWSTAKPFLE 432          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_ACIAC (Probable ubiquinone biosynthesis protein ubiB OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.123e-22
Identity = 58/224 (25.89%), Postives = 111/224 (49.55%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+   +  VR+P + WD+   +VL +E + GV I++++ L   G +  Q+A   +  +  Q+ + GFFHAD HPGN+ V L+       I  DFG++G +  F +E L   F A + +D K+V +  ++   +     ++ +  +++   +    + P ++ +L  +   LF  ++            + +    +EG+G  LDP+  L   A P+ +
Sbjct:  210 NAAQLRRNMERLGLVRIPEILWDFCHPEVLVMERMKGVPISQIERLRAAGVDIRQLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLEPGSFGRYISLDFGIVGSLTEFDKEYLAQNFTAFFRRDYKRVAELHVESGWVPADTRINELESAIRAVCEPYFDR-PLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWSTAKPFLE 432          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_ACISJ (Probable ubiquinone biosynthesis protein ubiB OS=Acidovorax sp. (strain JS42) GN=ubiB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.556e-21
Identity = 61/224 (27.23%), Postives = 110/224 (49.11%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+ + +  V +P VFWD+   +VL +E + GV IN++  L   G +  ++A   +  +  Q+ + GFFHAD HPGN+ V L        I  DFG++G +  F +E L   F A + +D K+V +  I+   +     ++ +  +++   +    + P ++ +L  +   LF  ++            + +    +EG+G  LDPD  L   A P+ +
Sbjct:  210 NAAQLRRNMQGLDLVLIPEVFWDFCHAEVLVMERMKGVPINQVDRLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWVPAHTRVNELEAAIRTVCEPYFDR-PLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWSTAKPFLE 432          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_XYLFM (Probable ubiquinone biosynthesis protein ubiB OS=Xylella fastidiosa (strain M12) GN=ubiB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.032e-21
Identity = 61/223 (27.35%), Postives = 109/223 (48.88%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA------LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAP 656
            NA   RR +     + VP V W +TA +VLTLE + G+  +++  LD  G +R  ++ + I  +  Q+ +  FFHAD H GN+ VD D A       I  DFG+MG++    +  L + F A++ KD +++ +  ++   +     +  +  + +   +   ++ P  Q +LA +   LF +A+            + +    +EG+G  LDP+  +  VA P
Sbjct:  208 NASVLRRFWEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPQHVRIEELEAAARSVCEPYFTR-PLSQISLAEVLMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARP 429          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_MARAV (Probable ubiquinone biosynthesis protein ubiB OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.528e-21
Identity = 60/224 (26.79%), Postives = 105/224 (46.88%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F N   + +P + WDYT   VL +E + G+ I ++ AL+  G N   +A + +E +  Q+ +  FFHAD HPGN+ VD+    D   I  DFG++G +    +  L     A + +D ++V Q  I    + P   ++    +++   + +  + P +  +       LF  A+            + +    +EG+G  L PD  L   A P+ +
Sbjct:  208 NASQLRRNFENSPLIYIPFIDWDYTRKSVLVMERIHGIPIADVPALEKAGVNMRVLAEKGVEIFFTQVFRDSFFHADMHPGNIFVDVSNPADPKYIAIDFGIVGTLAPDDQSYLARNLLAFFRRDYRQVAQLHIQSGWVPPETRVNEFEAAIRTVCEPIF-ERPLKDISFGHFLLRLFQTARRFNMEVQPQLVLLQKTLLNVEGLGRQLYPDLDLWSTAQPFLE 430          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: Y4139_ARATH (Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.913e-21
Identity = 60/219 (27.40%), Postives = 104/219 (47.49%), Query Frame = 3
Query:    3 KNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPY 659
            +N + F  +F++   V++P V+ +    +VL +E++ G++  + +A+   G + +      + A L Q+L+ G FH DPHPGN+    D  + Y DFG +  +    ++ L+D       +D  ++      L  L    D+S +  +++    N   +        +  G+    +  D P R P  F+ VIR+  T EGI   L PDF   EVA PY
Sbjct:  323 RNIEDFLENFKDDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMQDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMANDFTRLGFLAKDTDVSPIVPALEAIWQNSAGKGLADFNFRSVTGQ-FNKLVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPY 540          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_XANOR (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas oryzae pv. oryzae GN=ubiB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.723e-21
Identity = 60/223 (26.91%), Postives = 107/223 (47.98%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAP 656
            NA   RR +     + VP V W +TA + LTLE V G+  +++  LD  G +R  +A + +  +  Q+ +  FFHAD H GN+ VD      L+   I  DFG+MG++    +  L + F A++ KD +++ +  ++   +     +  +  + +   +   ++ P  + +LA +   LF +AQ            + +    +EG+G  LDP   +  VA P
Sbjct:  213 NASVLRRFWEGSDDLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSNVRIDELEAAARSVCEPYFTR-PLSEISLAQVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARP 434          
The following BLAST results are available for this feature:
BLAST of FC931833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
UBIB_BURXL3.135e-2227.19Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURPP3.135e-2227.19Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_BURP85.348e-2227.19Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_DIAST9.123e-2227.23Probable ubiquinone biosynthesis protein ubiB OS=D... [more]
UBIB_ACIAC9.123e-2225.89Probable ubiquinone biosynthesis protein ubiB OS=A... [more]
UBIB_ACISJ1.556e-2127.23Probable ubiquinone biosynthesis protein ubiB OS=A... [more]
UBIB_XYLFM2.032e-2127.35Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_MARAV4.528e-2126.79Probable ubiquinone biosynthesis protein ubiB OS=M... [more]
Y4139_ARATH5.913e-2127.40Uncharacterized aarF domain-containing protein kin... [more]
UBIB_XANOR7.723e-2126.91Probable ubiquinone biosynthesis protein ubiB OS=X... [more]

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Properties
Property NameValue
Genbank descriptionC34201F10EF PostHarveN Citrus clementina cDNA clone C34201F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931833 ID=FC931833; Name=FC931833; organism=Citrus clementina; type=EST; length=750bp
GAAAAAATGCTGATAGATTCCGTCGAGATTTTCGGAATATAAAGTGGGTC
CGGGTACCTCTGGTGTTTTGGGATTATACTGCTACAAAGGTGTTGACATT
GGAGTATGTACCAGGAGTTAAGATCAATGAGTTGAAAGCACTAGATTTGC
AGGGTTATAATCGTTCTCAAATTGCACCGCGTGCAATTGAAGCGTACTTG
AATCAGATACTCAAAACTGGTTTCTTTCATGCTGATCCTCATCCTGGAAA
TCTTGCTGTCGATTTAGATGAAGCACTCATCTATTATGATTTTGGTATGA
TGGGGGAGATTAAATCCTTTACCCGTGAAAGATTGCTTGATCTTTTCTAT
GCAGTTTATGAGAAAGATGCCAAAAAGGTTATCCAAAGGTTGATTGATCT
CGAAGCACTTCAACCCACAGGAGATATGTCATCGGTAAGGAGATCCGTGC
AATTTTTCTTGGACAATTTGCTAAGCCAGAGTCCAGATCAGCAGCAGACT
TTGGCTGCAATTGGAGAGGATTTGTTTGCAATAGCTCAAGATCAACCATT
TCGGTTTCCATCCACCTTTACTTTCGTTATAAGGGCATTCTCCACACTTG
AAGGTATCGGCAACATTCTTGACCCAGATTTTTCCCTTTGTGAGGTTGCT
GCACCTTATGCACAGGAGCTATTGGATTTAAACAGCAGCAGCAGTCTGGA
ACACAGCTAGTGGAGCAAATCAGAAACAGCTGATGATGCAGATCTTCGAC
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