FC931833

Overview
NameFC931833
Unique NameFC931833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_XANOP (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=ubiB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.723e-21
Identity = 60/223 (26.91%), Postives = 107/223 (47.98%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAP 656
            NA   RR +     + VP V W +TA + LTLE V G+  +++  LD  G +R  +A + +  +  Q+ +  FFHAD H GN+ VD      L+   I  DFG+MG++    +  L + F A++ KD +++ +  ++   +     +  +  + +   +   ++ P  + +LA +   LF +AQ            + +    +EG+G  LDP   +  VA P
Sbjct:  213 NASVLRRFWEGSDDLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSNVRIDELEAAARSVCEPYFTR-PLSEISLAQVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARP 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_XANOM (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=ubiB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.723e-21
Identity = 60/223 (26.91%), Postives = 107/223 (47.98%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAP 656
            NA   RR +     + VP V W +TA + LTLE V G+  +++  LD  G +R  +A + +  +  Q+ +  FFHAD H GN+ VD      L+   I  DFG+MG++    +  L + F A++ KD +++ +  ++   +     +  +  + +   +   ++ P  + +LA +   LF +AQ            + +    +EG+G  LDP   +  VA P
Sbjct:  213 NASVLRRFWEGSDDLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSNVRIDELEAAARSVCEPYFTR-PLSEISLAQVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARP 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_XANC5 (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=ubiB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.723e-21
Identity = 60/223 (26.91%), Postives = 107/223 (47.98%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAP 656
            NA   RR +     + VP V W +TA + LTLE V G+  +++  LD  G +R  +A + +  +  Q+ +  FFHAD H GN+ VD      L+   I  DFG+MG++    +  L + F A++ KD +++ +  ++   +     +  +  + +   +   ++ P  + +LA +   LF +AQ            + +    +EG+G  LDP   +  VA P
Sbjct:  213 NASVLRRFWEGSDDLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSNVRIDELEAAARSVCEPYFTR-PLSEISLAQVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARP 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_CHRVO (Probable ubiquinone biosynthesis protein ubiB OS=Chromobacterium violaceum GN=ubiB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.723e-21
Identity = 57/218 (26.15%), Postives = 108/218 (49.54%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPY 659
            NA + RR+F+    + VP VF+DY++ +VLTLE++ G+ + +++ L   G +  +++   +E +  Q+ + GFFHAD HPGN+ V  D   I  DFG++G +    +  L   F A + +D  +V    I+   +        +  +V+   + +  + P  + +   +   LF  ++            + +    +EG+G  LDP+  L + A P+
Sbjct:  210 NASQLRRNFKGSDMLIVPEVFYDYSSREVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGNIFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIESGWVPRDTRAEELEAAVRTVCEPIF-EKPLSEISFGMVLLRLFETSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWDTAKPF 426          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_XANCP (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas campestris pv. campestris GN=ubiB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.009e-20
Identity = 60/223 (26.91%), Postives = 107/223 (47.98%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAP 656
            NA   RR +     + VP V W +TA + LTLE V G+  +++  LD  G +R  +A + +  +  Q+ +  FFHAD H GN+ VD      L+   I  DFG+MG++    +  L + F A++ KD +++ +  ++   +     +  +  + +   +   ++ P  + +LA +   LF +AQ            + +    +EG+G  LDP   +  VA P
Sbjct:  213 NASVLRRFWEGSDDLYVPEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSNVRIDELEAAARSVCEPYFTR-PLSEISLAEVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARP 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_XANCB (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas campestris pv. campestris (strain B100) GN=ubiB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.009e-20
Identity = 60/223 (26.91%), Postives = 107/223 (47.98%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAP 656
            NA   RR +     + VP V W +TA + LTLE V G+  +++  LD  G +R  +A + +  +  Q+ +  FFHAD H GN+ VD      L+   I  DFG+MG++    +  L + F A++ KD +++ +  ++   +     +  +  + +   +   ++ P  + +LA +   LF +AQ            + +    +EG+G  LDP   +  VA P
Sbjct:  213 NASVLRRFWEGSDDLYVPEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERCLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSNVRIDELEAAARSVCEPYFTR-PLSEISLAEVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARP 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_XANC8 (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas campestris pv. campestris (strain 8004) GN=ubiB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.009e-20
Identity = 60/223 (26.91%), Postives = 107/223 (47.98%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAP 656
            NA   RR +     + VP V W +TA + LTLE V G+  +++  LD  G +R  +A + +  +  Q+ +  FFHAD H GN+ VD      L+   I  DFG+MG++    +  L + F A++ KD +++ +  ++   +     +  +  + +   +   ++ P  + +LA +   LF +AQ            + +    +EG+G  LDP   +  VA P
Sbjct:  213 NASVLRRFWEGSDDLYVPEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSNVRIDELEAAARSVCEPYFTR-PLSEISLAEVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARP 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_XANAC (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas axonopodis pv. citri GN=ubiB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.009e-20
Identity = 60/223 (26.91%), Postives = 107/223 (47.98%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAP 656
            NA   RR +     + VP V W +TA + LTLE V G+  +++  LD  G +R  +A + +  +  Q+ +  FFHAD H GN+ VD      L+   I  DFG+MG++    +  L + F A++ KD +++ +  ++   +     +  +  + +   +   ++ P  + +LA +   LF +AQ            + +    +EG+G  LDP   +  VA P
Sbjct:  213 NASVLRRFWEGSDDLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSNVRIDELEAAARSVCEPYFNR-PLSEISLAQVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPRLDIWAVARP 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_DELAS (Probable ubiquinone biosynthesis protein ubiB OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.317e-20
Identity = 56/224 (25.00%), Postives = 111/224 (49.55%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+   +  V +P V+WD+  + V+ ++ + GV I++++ L   G +  ++A   +  +  Q+ + GFFHAD HPGN+ V L+       I  DFG++G +  + +E L   F A + +D K+V +  I+   + P+  +  +  +++   +    + P  + +L  +   LF  ++            + +    +EG+G  LDP+  L   A P+ +
Sbjct:  210 NAAQLRRNMEGLDLVLIPEVYWDFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYKRVAELHIESGWVPPSTRVDELEAAIRAVCEPYFDR-PLAEISLGMVLMRLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPNLDLWSTAKPFLE 432          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_ENT38 (Probable ubiquinone biosynthesis protein ubiB OS=Enterobacter sp. (strain 638) GN=ubiB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.539e-20
Identity = 56/224 (25.00%), Postives = 109/224 (48.66%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F N   + VP V+ DY +  ++ +E + G+ ++++ AL+ QG N   +A R ++ +  Q+ +  FFHAD HPGN+ V      D   I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFENSPMLYVPEVYSDYCSQNMMVMERIYGIPVSDIVALENQGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPEDPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLSEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434          
The following BLAST results are available for this feature:
BLAST of FC931833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
UBIB_XANOP7.723e-2126.91Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_XANOM7.723e-2126.91Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_XANC57.723e-2126.91Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_CHRVO7.723e-2126.15Probable ubiquinone biosynthesis protein ubiB OS=C... [more]
UBIB_XANCP1.009e-2026.91Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_XANCB1.009e-2026.91Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_XANC81.009e-2026.91Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_XANAC1.009e-2026.91Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_DELAS1.317e-2025.00Probable ubiquinone biosynthesis protein ubiB OS=D... [more]
UBIB_ENT388.539e-2025.00Probable ubiquinone biosynthesis protein ubiB OS=E... [more]

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Properties
Property NameValue
Genbank descriptionC34201F10EF PostHarveN Citrus clementina cDNA clone C34201F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931833 ID=FC931833; Name=FC931833; organism=Citrus clementina; type=EST; length=750bp
GAAAAAATGCTGATAGATTCCGTCGAGATTTTCGGAATATAAAGTGGGTC
CGGGTACCTCTGGTGTTTTGGGATTATACTGCTACAAAGGTGTTGACATT
GGAGTATGTACCAGGAGTTAAGATCAATGAGTTGAAAGCACTAGATTTGC
AGGGTTATAATCGTTCTCAAATTGCACCGCGTGCAATTGAAGCGTACTTG
AATCAGATACTCAAAACTGGTTTCTTTCATGCTGATCCTCATCCTGGAAA
TCTTGCTGTCGATTTAGATGAAGCACTCATCTATTATGATTTTGGTATGA
TGGGGGAGATTAAATCCTTTACCCGTGAAAGATTGCTTGATCTTTTCTAT
GCAGTTTATGAGAAAGATGCCAAAAAGGTTATCCAAAGGTTGATTGATCT
CGAAGCACTTCAACCCACAGGAGATATGTCATCGGTAAGGAGATCCGTGC
AATTTTTCTTGGACAATTTGCTAAGCCAGAGTCCAGATCAGCAGCAGACT
TTGGCTGCAATTGGAGAGGATTTGTTTGCAATAGCTCAAGATCAACCATT
TCGGTTTCCATCCACCTTTACTTTCGTTATAAGGGCATTCTCCACACTTG
AAGGTATCGGCAACATTCTTGACCCAGATTTTTCCCTTTGTGAGGTTGCT
GCACCTTATGCACAGGAGCTATTGGATTTAAACAGCAGCAGCAGTCTGGA
ACACAGCTAGTGGAGCAAATCAGAAACAGCTGATGATGCAGATCTTCGAC
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