FC931833

Overview
NameFC931833
Unique NameFC931833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_AZOVD (Probable ubiquinone biosynthesis protein ubiB OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.440e-19
Identity = 58/224 (25.89%), Postives = 105/224 (46.88%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + +R+F     + VP ++WD+   KVL +E + GV + +L AL  QG +   +A R +E +  Q+ +  FFHAD HPGN+ V      D   I  D G++G +    ++ L     A +++D +KV Q  ID   +     ++    +++   + +  + P +  +   +   LF  A+            + +    +EG+G  L P+  L   A P+ +
Sbjct:  213 NASQLKRNFEGSPLLYVPQIYWDWCRPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSGWVPADTQVNEFEAAIRTVCEPIF-EKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDLWTTAKPFLE 435          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_VARPS (Probable ubiquinone biosynthesis protein ubiB OS=Variovorax paradoxus (strain S110) GN=ubiB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.233e-18
Identity = 56/224 (25.00%), Postives = 108/224 (48.21%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+  +++ V +P +FWD+   +V+ +E + GV I +L  L   G +  ++A   +  +  Q+ + GFFHAD HPGN+ V L        I  DFG++G +    +E L   F A + +D K+V +  ++   +     +  +  +++   +    + P ++ +L  +   LF  ++            + +    +EG+G  LDP+  L   A P+ +
Sbjct:  210 NAAQLRRNMASLELVLIPEMFWDFCHPEVIVMERMNGVPIAQLDRLRAAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIIGTLTESDKEYLAQNFVAFFRRDYKRVAELHLESGWVPEGTRIDELEGAIRTVCEPYFDR-PLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWHTAKPFLE 432          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_SODGM (Probable ubiquinone biosynthesis protein ubiB OS=Sodalis glossinidius (strain morsitans) GN=ubiB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.233e-18
Identity = 54/224 (24.11%), Postives = 107/224 (47.77%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F     + +P V+ DY +  ++ +E + GV +N++ AL+ QG N   +A R ++ +  Q+ +  FFH D HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  210 NAIQLRRNFDGSPMLYIPEVYPDYCSETMMVMERIYGVPVNDVAALEKQGTNMKLLAERGVQVFFTQVFRDSFFHGDMHPGNIFVSFEHPENPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEDFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYIEGVGRQLYPQLDLWKTAKPFLE 432          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_SHEWM (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=ubiB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.233e-18
Identity = 54/224 (24.11%), Postives = 110/224 (49.11%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + R +F +   + +P ++ +   T+++ +E + G+ ++++ AL  QG N   +A R +E +  Q+ +  FFHAD HPGN+ V      D   I  D G+MG +    +  L + F A + +D  ++ Q  I+   + P  D+++  ++V+   + + ++ P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  211 NAVKLRNNFLDSGSLYIPYMYEELCFTRLIVMERIEGIPVSDMAALKAQGTNLKVLAERGVELFFTQVFRDNFFHADMHPGNIFVSREHPEDPYYIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYHRIAQLYIESGWVSPDTDIAAFEQAVKVVCEPMFNK-PLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQTAKPFLE 433          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_SHEPW (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=ubiB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.233e-18
Identity = 55/224 (24.55%), Postives = 110/224 (49.11%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + R +F +   + +P ++ +   T+++ +E + GV +++  AL+ QG N   +A R +E +  Q+ +  FFHAD HPGN+ V      D   I  D G+MG +    +  L + F A + +D +++ Q  I+   +    D+S+  ++V+   + + ++ P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  211 NAIKLRNNFLDSNALYIPYMYEELCFTRLIVMERIDGVPVSDKAALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGNIFVSREHPNDPFYIGLDCGIMGTLTDEDKRYLAENFLAFFNRDYRRIAQLYIESGWVSADTDISAFEQAVKVVCEPMFNK-PLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQTAKPFLE 433          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_ENTS8 (Probable ubiquinone biosynthesis protein ubiB OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ubiB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.233e-18
Identity = 53/224 (23.66%), Postives = 107/224 (47.77%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F N   + VP V+ DY +  ++ +E + G+ +N++ AL+  G +   +A R ++ +  Q+ +  FFH D HPGN+ V  D       I  D G++G +    +  L + F A + +D ++V +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFENSPMLYVPEVYSDYCSPTMMVMERIYGIPVNDVAALEANGTDMKLLAERGVQVFFTQVFRDSFFHGDMHPGNIFVSHDHPHDPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRRVAELHVDSGWVPPDTNVEEFESAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYIEGVGRQLYPQLDLWKTAKPFLE 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_EDWI9 (Probable ubiquinone biosynthesis protein ubiB OS=Edwardsiella ictaluri (strain 93-146) GN=ubiB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.233e-18
Identity = 58/224 (25.89%), Postives = 104/224 (46.43%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F     + +P VF DY    VL +E + GV ++++ AL  Q  N   +A R ++ +  Q+ +  FFHAD HPGN+ V      D   I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  Q +   +  +LF  A+            + +    +EG+G  L P   L   A P+ +
Sbjct:  211 NAIQLRRNFDASPMLYIPEVFSDYCRESVLVMERIYGVPVSDIAALRAQNTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPQDPQYIGIDCGIVGSLNKADKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNIEEFEFAIRTVCEPIF-EKPLDQISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDLWTTAKPFLE 433          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_ERWCT (Probable ubiquinone biosynthesis protein ubiB OS=Erwinia carotovora subsp. atroseptica GN=ubiB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.610e-18
Identity = 53/224 (23.66%), Postives = 107/224 (47.77%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F N   + VP ++ DY    +L +E + G+ ++++ AL   G +   +A R ++ +  Q+ +  FFHAD HPGN+ +  D       I  D G++G +    +  L + F A + +D +KV +  +D   + P  +++    +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFENSPMLYVPEIYSDYCRESMLVMERIYGIPVSDVDALKANGTDMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFISYDHPEDPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVADFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYIEGVGRQLYPQLDLWKTAKPFLE 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_CELJU (Probable ubiquinone biosynthesis protein ubiB OS=Cellvibrio japonicus (strain Ueda107) GN=ubiB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.610e-18
Identity = 56/224 (25.00%), Postives = 108/224 (48.21%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            N  + RR+F N   + VP V+W+YT T VL +E + G+ + +L AL+ Q  +  ++A R +E +  Q+ +  FFHAD HPGN+ V  +       I  D  ++G +    +  L     A++ +D ++V +  ++   +     +  +  +V+   + +  + P ++ + A +  +LF  A+            + +    +EG+G  L PD  L   A P+ +
Sbjct:  205 NGSQLRRNFLNSPLLYVPEVYWEYTRTNVLVMERIYGIPVTDLAALNAQQTDMKKLAERGVEIFFTQVFEHNFFHADMHPGNIFVAHEHPSAPQYIAVDMAIVGSLTRADQYYLARNLLAMFRRDYRQVAELHVESGWVPSHVRVEELEAAVRTVCEPIF-EKPLKEISFAQVLLNLFRTARRFEMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWATAHPFLE 427          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_SALTY (Probable ubiquinone biosynthesis protein ubiB OS=Salmonella typhimurium GN=ubiB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.103e-18
Identity = 53/224 (23.66%), Postives = 108/224 (48.21%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F N   + +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFENSPMLYIPEVYSDYCSQNMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVKVFFTQVFRDSFFHADMHPGNIFVSHEHPENPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEDFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434          
The following BLAST results are available for this feature:
BLAST of FC931833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
UBIB_AZOVD9.440e-1925.89Probable ubiquinone biosynthesis protein ubiB OS=A... [more]
UBIB_VARPS1.233e-1825.00Probable ubiquinone biosynthesis protein ubiB OS=V... [more]
UBIB_SODGM1.233e-1824.11Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHEWM1.233e-1824.11Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHEPW1.233e-1824.55Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_ENTS81.233e-1823.66Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_EDWI91.233e-1825.89Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ERWCT1.610e-1823.66Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_CELJU1.610e-1825.00Probable ubiquinone biosynthesis protein ubiB OS=C... [more]
UBIB_SALTY2.103e-1823.66Probable ubiquinone biosynthesis protein ubiB OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC34201F10EF PostHarveN Citrus clementina cDNA clone C34201F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931833 ID=FC931833; Name=FC931833; organism=Citrus clementina; type=EST; length=750bp
GAAAAAATGCTGATAGATTCCGTCGAGATTTTCGGAATATAAAGTGGGTC
CGGGTACCTCTGGTGTTTTGGGATTATACTGCTACAAAGGTGTTGACATT
GGAGTATGTACCAGGAGTTAAGATCAATGAGTTGAAAGCACTAGATTTGC
AGGGTTATAATCGTTCTCAAATTGCACCGCGTGCAATTGAAGCGTACTTG
AATCAGATACTCAAAACTGGTTTCTTTCATGCTGATCCTCATCCTGGAAA
TCTTGCTGTCGATTTAGATGAAGCACTCATCTATTATGATTTTGGTATGA
TGGGGGAGATTAAATCCTTTACCCGTGAAAGATTGCTTGATCTTTTCTAT
GCAGTTTATGAGAAAGATGCCAAAAAGGTTATCCAAAGGTTGATTGATCT
CGAAGCACTTCAACCCACAGGAGATATGTCATCGGTAAGGAGATCCGTGC
AATTTTTCTTGGACAATTTGCTAAGCCAGAGTCCAGATCAGCAGCAGACT
TTGGCTGCAATTGGAGAGGATTTGTTTGCAATAGCTCAAGATCAACCATT
TCGGTTTCCATCCACCTTTACTTTCGTTATAAGGGCATTCTCCACACTTG
AAGGTATCGGCAACATTCTTGACCCAGATTTTTCCCTTTGTGAGGTTGCT
GCACCTTATGCACAGGAGCTATTGGATTTAAACAGCAGCAGCAGTCTGGA
ACACAGCTAGTGGAGCAAATCAGAAACAGCTGATGATGCAGATCTTCGAC
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