FC931833

Overview
NameFC931833
Unique NameFC931833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_SHIF8 (Probable ubiquinone biosynthesis protein ubiB OS=Shigella flexneri serotype 5b (strain 8401) GN=ubiB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.992e-18
Identity = 52/224 (23.21%), Postives = 108/224 (48.21%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F +   + +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_SHIDS (Probable ubiquinone biosynthesis protein ubiB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ubiB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.992e-18
Identity = 52/224 (23.21%), Postives = 108/224 (48.21%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F +   + +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_SHIBS (Probable ubiquinone biosynthesis protein ubiB OS=Shigella boydii serotype 4 (strain Sb227) GN=ubiB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.992e-18
Identity = 52/224 (23.21%), Postives = 108/224 (48.21%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F +   + +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_SHIB3 (Probable ubiquinone biosynthesis protein ubiB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ubiB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.992e-18
Identity = 52/224 (23.21%), Postives = 108/224 (48.21%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F +   + +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_PSEU2 (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ubiB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.992e-18
Identity = 56/224 (25.00%), Postives = 104/224 (46.43%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F     + VP V+WD+   KVL +E + G+++ ++  L  Q  +   +A R +E +  QI +  FFHAD HPGN+ V          I  D G++G +    ++ L    +A +++D ++V Q  ID   +     ++    +++   + +  + P +  +   +   LF  A+            + +    +EG+G  L P+  L   A PY +
Sbjct:  212 NASQLRRNFEGSDLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKLLAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWAPKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPAETKLNEFEAAIRTVCEPIF-EKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDLWSTAQPYLE 434
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_ECOSE (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli (strain SE11) GN=ubiB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.992e-18
Identity = 52/224 (23.21%), Postives = 108/224 (48.21%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F +   + +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_ECOLU (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ubiB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.992e-18
Identity = 52/224 (23.21%), Postives = 108/224 (48.21%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F +   + +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_ECOLI (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli (strain K12) GN=ubiB PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.992e-18
Identity = 52/224 (23.21%), Postives = 108/224 (48.21%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F +   + +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_ECOLC (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ubiB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.992e-18
Identity = 52/224 (23.21%), Postives = 108/224 (48.21%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F +   + +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
[Close]
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_ECOHS (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli O9:H4 (strain HS) GN=ubiB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.992e-18
Identity = 52/224 (23.21%), Postives = 108/224 (48.21%), Query Frame = 3 
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F +   + +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434
The following BLAST results are available for this feature:
BLAST of FC931833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
UBIB_SHIF87.992e-1823.21Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHIDS7.992e-1823.21Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHIBS7.992e-1823.21Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHIB37.992e-1823.21Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_PSEU27.992e-1825.00Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_ECOSE7.992e-1823.21Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOLU7.992e-1823.21Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOLI7.992e-1823.21Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOLC7.992e-1823.21Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOHS7.992e-1823.21Probable ubiquinone biosynthesis protein ubiB OS=E... [more]

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Properties
Property NameValue
Genbank descriptionC34201F10EF PostHarveN Citrus clementina cDNA clone C34201F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931833 ID=FC931833; Name=FC931833; organism=Citrus clementina; type=EST; length=750bp
GAAAAAATGCTGATAGATTCCGTCGAGATTTTCGGAATATAAAGTGGGTC
CGGGTACCTCTGGTGTTTTGGGATTATACTGCTACAAAGGTGTTGACATT
GGAGTATGTACCAGGAGTTAAGATCAATGAGTTGAAAGCACTAGATTTGC
AGGGTTATAATCGTTCTCAAATTGCACCGCGTGCAATTGAAGCGTACTTG
AATCAGATACTCAAAACTGGTTTCTTTCATGCTGATCCTCATCCTGGAAA
TCTTGCTGTCGATTTAGATGAAGCACTCATCTATTATGATTTTGGTATGA
TGGGGGAGATTAAATCCTTTACCCGTGAAAGATTGCTTGATCTTTTCTAT
GCAGTTTATGAGAAAGATGCCAAAAAGGTTATCCAAAGGTTGATTGATCT
CGAAGCACTTCAACCCACAGGAGATATGTCATCGGTAAGGAGATCCGTGC
AATTTTTCTTGGACAATTTGCTAAGCCAGAGTCCAGATCAGCAGCAGACT
TTGGCTGCAATTGGAGAGGATTTGTTTGCAATAGCTCAAGATCAACCATT
TCGGTTTCCATCCACCTTTACTTTCGTTATAAGGGCATTCTCCACACTTG
AAGGTATCGGCAACATTCTTGACCCAGATTTTTCCCTTTGTGAGGTTGCT
GCACCTTATGCACAGGAGCTATTGGATTTAAACAGCAGCAGCAGTCTGGA
ACACAGCTAGTGGAGCAAATCAGAAACAGCTGATGATGCAGATCTTCGAC
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