FC931868

Overview
NameFC931868
Unique NameFC931868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_CLOB1 (60 kDa chaperonin OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=groL PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.354e-43
Identity = 87/155 (56.13%), Postives = 120/155 (77.42%), Query Frame = 3 
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDL 674
            AK + F + +R +M+AG+DKL+D V +TLGP+GRNVVLD+ FGS  + NDGVTIAR IEL DP EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ ++ GI K V   VEE++   +P+ G++DI  VA ISA ++++
Sbjct:    2 AKSLLFGEQARRSMEAGVDKLADTVRVTLGPKGRNVVLDKKFGSPLITNDGVTIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPIQIRTGIRKAVEKAVEEIKVISKPVNGKEDIARVAAISAASEEV 156
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH601_ANAVT (60 kDa chaperonin 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL1 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.354e-43
Identity = 89/157 (56.69%), Postives = 120/157 (76.43%), Query Frame = 3 
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            AK I +++ +R A++ GID L++AV +TLGP+GRNVVL++ FG+ ++VNDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  I+K GL +V +GAN + LKRGIDK    LV+ +++  RP+E    I  V +ISAGNDD +G
Sbjct:    2 AKRIIYNENARRALERGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAIVKEGLRNVAAGANAILLKRGIDKATGFLVDRIKEHARPVEDSKSIAQVGSISAGNDDEVG 158
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH601_ANASP (60 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 7120) GN=groL1 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.354e-43
Identity = 89/157 (56.69%), Postives = 120/157 (76.43%), Query Frame = 3 
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            AK I +++ +R A++ GID L++AV +TLGP+GRNVVL++ FG+ ++VNDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  I+K GL +V +GAN + LKRGIDK    LV+ +++  RP+E    I  V +ISAGNDD +G
Sbjct:    2 AKRIIYNENARRALERGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAIVKEGLRNVAAGANAILLKRGIDKATGFLVDRIKEHARPVEDSKSIAQVGSISAGNDDEVG 158
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_BACTR (60 kDa chaperonin OS=Bacillus thermoglucosidasius GN=groL PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.299e-43
Identity = 89/155 (57.42%), Postives = 121/155 (78.06%), Query Frame = 3 
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDL 674
            AK+I F + +R AM  G+DKL+DAV +TLGP+GRNVVL++ FGS  + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANP+ +++GI+K V   VEEL+   +PI+G++ I  VA ISA ++++
Sbjct:    2 AKEIKFSEEARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGIRKGIEKAVAVAVEELKAISKPIQGKESIAQVAAISAADEEV 156
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_BACST (60 kDa chaperonin OS=Bacillus stearothermophilus GN=groL PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.299e-43
Identity = 89/155 (57.42%), Postives = 121/155 (78.06%), Query Frame = 3 
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDL 674
            AK+I F + +R AM  G+DKL+DAV +TLGP+GRNVVL++ FGS  + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANP+ +++GI+K V   VEEL+   +PI+G++ I  VA ISA ++++
Sbjct:    2 AKEIKFSEEARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGIRKGIEKAVAVAVEELKAISKPIQGKESIAQVAAISAADEEV 156
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_LISW6 (60 kDa chaperonin OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=groL PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.084e-42
Identity = 89/155 (57.42%), Postives = 121/155 (78.06%), Query Frame = 3 
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDL 674
            AKDI F + +R AM  G+D+L++AV +TLGP+GRNVVL++ FGS  + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANPV ++RGI+K V   +EEL+   +PIE ++ I  VA IS+G++++
Sbjct:    2 AKDIKFSEDARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISSGDEEV 156
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_LISMO (60 kDa chaperonin OS=Listeria monocytogenes GN=groL PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.084e-42
Identity = 89/155 (57.42%), Postives = 121/155 (78.06%), Query Frame = 3 
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDL 674
            AKDI F + +R AM  G+D+L++AV +TLGP+GRNVVL++ FGS  + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANPV ++RGI+K V   +EEL+   +PIE ++ I  VA IS+G++++
Sbjct:    2 AKDIKFSEDARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISSGDEEV 156
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_LISMH (60 kDa chaperonin OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=groL PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.084e-42
Identity = 89/155 (57.42%), Postives = 121/155 (78.06%), Query Frame = 3 
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDL 674
            AKDI F + +R AM  G+D+L++AV +TLGP+GRNVVL++ FGS  + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANPV ++RGI+K V   +EEL+   +PIE ++ I  VA IS+G++++
Sbjct:    2 AKDIKFSEDARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISSGDEEV 156
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_LISMF (60 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain F2365) GN=groL PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.084e-42
Identity = 89/155 (57.42%), Postives = 121/155 (78.06%), Query Frame = 3 
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDL 674
            AKDI F + +R AM  G+D+L++AV +TLGP+GRNVVL++ FGS  + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANPV ++RGI+K V   +EEL+   +PIE ++ I  VA IS+G++++
Sbjct:    2 AKDIKFSEDARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISSGDEEV 156
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_LISMC (60 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=groL PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.084e-42
Identity = 89/155 (57.42%), Postives = 121/155 (78.06%), Query Frame = 3 
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDL 674
            AKDI F + +R AM  G+D+L++AV +TLGP+GRNVVL++ FGS  + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANPV ++RGI+K V   +EEL+   +PIE ++ I  VA IS+G++++
Sbjct:    2 AKDIKFSEDARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISSGDEEV 156
The following BLAST results are available for this feature:
BLAST of FC931868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CLOB16.354e-4356.1360 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH601_ANAVT6.354e-4356.6960 kDa chaperonin 1 OS=Anabaena variabilis (strain... [more]
CH601_ANASP6.354e-4356.6960 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 71... [more]
CH60_BACTR8.299e-4357.4260 kDa chaperonin OS=Bacillus thermoglucosidasius ... [more]
CH60_BACST8.299e-4357.4260 kDa chaperonin OS=Bacillus stearothermophilus G... [more]
CH60_LISW61.084e-4257.4260 kDa chaperonin OS=Listeria welshimeri serovar 6... [more]
CH60_LISMO1.084e-4257.4260 kDa chaperonin OS=Listeria monocytogenes GN=gro... [more]
CH60_LISMH1.084e-4257.4260 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LISMF1.084e-4257.4260 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LISMC1.084e-4257.4260 kDa chaperonin OS=Listeria monocytogenes seroty... [more]

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Properties
Property NameValue
Genbank descriptionC34202A10EF PostHarveN Citrus clementina cDNA clone C34202A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931868 ID=FC931868; Name=FC931868; organism=Citrus clementina; type=EST; length=700bp
GGCAGCTTCTACTTGTTGTTGGTACCTTATCCGAAACAATTTCCCTCAGC
AGACGCTTCACTCCGTTTGGTTGATTGTTCGAAATGGCTTCTGCTAACGC
CCTTTCTTCGGCTTCCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGA
GGAGAGGAAATCAGAATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCT
GTTAGAGCGTCTGCCAAAGATATTGCTTTTGACCAGATCTCCAGGGCCGC
AATGCAGGCCGGCATCGATAAGCTTTCCGATGCTGTTGGCCTTACTCTGG
GTCCAAGAGGGAGAAATGTTGTTCTGGATGAATTTGGAAGTTCGAAAGTG
GTTAATGATGGAGTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCAT
GGAAAATGCTGGTGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATG
ACTCTGCTGGTGATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATA
ATTAAACTAGGACTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTT
GAAGAGAGGGATTGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGA
AGAGGGTCAGGCCTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACC
ATCTCTGCTGGGAATGATGACCTGATTGGGACATGATCGCCGATGCNATT
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