FC931868

Overview
NameFC931868
Unique NameFC931868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_LISIN (60 kDa chaperonin OS=Listeria innocua GN=groL PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.084e-42
Identity = 89/155 (57.42%), Postives = 121/155 (78.06%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDL 674
            AKDI F + +R AM  G+D+L++AV +TLGP+GRNVVL++ FGS  + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANPV ++RGI+K V   +EEL+   +PIE ++ I  VA IS+G++++
Sbjct:    2 AKDIKFSEDARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISSGDEEV 156          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_GEOSW (60 kDa chaperonin OS=Geobacillus sp. (strain WCH70) GN=groL PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.084e-42
Identity = 89/155 (57.42%), Postives = 121/155 (78.06%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDL 674
            AK+I F + +R AM  G+DKL+DAV +TLGP+GRNVVL++ FGS  + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANP+ +++GI+K V   VEEL+   +PI+G++ I  VA ISA ++++
Sbjct:    2 AKEIKFSEEARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGIRKGIEKAVAVAVEELKAISKPIKGKESIAQVAAISAADEEV 156          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_CLOBO (60 kDa chaperonin OS=Clostridium botulinum GN=groL PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.416e-42
Identity = 88/155 (56.77%), Postives = 121/155 (78.06%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDL 674
            AK I F + SR AMQAG+DKL++AV +TLGP+GRNVVLD+ FGS  + NDGVTIA+ IEL DP EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ +++GI   V   VE+++K  + ++G++DI  VA ISA + ++
Sbjct:    2 AKSILFGEESRRAMQAGVDKLANAVKVTLGPKGRNVVLDKKFGSPLITNDGVTIAKEIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRKGIKLAVDTAVEQIKKSSKQVDGKEDIARVAAISAADPEI 156          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_HALOH (60 kDa chaperonin OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=groL PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.849e-42
Identity = 86/157 (54.78%), Postives = 122/157 (77.71%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            AK++ F + +R A++ G+D L++AV +TLGP+GRNVVL++ FG+  + NDGV+IAR IEL +  EN GA  ++EVA+KTND AGDGTTTA+VLA+ I K GL +V +GANP+ LKRGI+K V  LVEE+++  +P+EG++ +  VA ISAGND+ +G
Sbjct:    2 AKELKFSEDARRALERGVDTLANAVKVTLGPKGRNVVLEKSFGAPTITNDGVSIAREIELENHYENMGAQTVKEVATKTNDVAGDGTTTATVLAQAIFKEGLKNVAAGANPMILKRGIEKAVQKLVEEIKELSKPVEGKEAVSQVAAISAGNDEEVG 158          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_GEOTN (60 kDa chaperonin OS=Geobacillus thermodenitrificans (strain NG80-2) GN=groL PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.849e-42
Identity = 89/155 (57.42%), Postives = 120/155 (77.42%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDL 674
            AK+I F + +R AM  G+DKL+DAV +TLGP+GRNVVL++ FGS  + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANP+ ++RGI+K V   VEEL+   +PI+G++ I  VA ISA ++++
Sbjct:    2 AKEIKFSEEARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVAAGANPMGIRRGIEKAVAVAVEELKAISKPIKGKESIAQVAAISAADEEV 156          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_SYNE7 (60 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groL PE=3 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.415e-42
Identity = 87/157 (55.41%), Postives = 119/157 (75.80%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            AK I +++ +R A++ GID L++AV +TLGP+GRNVVL++ FG+ +++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN + LKRGIDK  + LVE+++   RP+E    I  V  ISAGND  +G
Sbjct:    2 AKRIIYNENARRALEKGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAVVKEGLRNVAAGANAILLKRGIDKATNFLVEQIKSHARPVEDSKSIAQVGAISAGNDFEVG 158          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_PELPB (60 kDa chaperonin OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=groL PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.415e-42
Identity = 88/158 (55.70%), Postives = 118/158 (74.68%), Query Frame = 3
Query:  210 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            +AKDI FD  +RA ++ G+DKL++AV +TLGP GRNV++D+ FG+     DGVT+A+ IEL+DP EN GA ++REVASKT+D AGDGTTTA+VLA+ I + GL +V +GA P+ LKRGID+ V  +V+EL    R I G+ +I  V TISA ND +IG
Sbjct:    2 TAKDILFDSDARAKLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELSDPFENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDRAVKEVVQELRNISRSISGKKEIAQVGTISANNDPVIG 159          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_CLOBB (60 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=groL PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.415e-42
Identity = 87/155 (56.13%), Postives = 120/155 (77.42%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDL 674
            AK + F + +R +MQ G+DKL+D V +TLGP+GRNVVLD+ FGS  + NDGV+IAR IEL DP EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ ++ GI   V   VEE++K  +P+EG++DI  VA ISA ++++
Sbjct:    2 AKMLKFGEDARRSMQVGVDKLADTVKVTLGPKGRNVVLDKKFGSPLITNDGVSIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRNGIRMAVDKAVEEIKKISKPVEGKEDIARVAAISAADEEI 156          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_CLOBA (60 kDa chaperonin OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=groL PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.415e-42
Identity = 87/155 (56.13%), Postives = 120/155 (77.42%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDL 674
            AK + F + +R +MQ G+DKL+D V +TLGP+GRNVVLD+ FGS  + NDGV+IAR IEL DP EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ ++ GI   V   VEE++K  +P+EG++DI  VA ISA ++++
Sbjct:    2 AKMLKFGEDARRSMQVGVDKLADTVKVTLGPKGRNVVLDKKFGSPLITNDGVSIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRNGIRMAVDKAVEEIKKISKPVEGKEDIARVAAISAADEEI 156          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH601_SYNP6 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL1 PE=3 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.415e-42
Identity = 87/157 (55.41%), Postives = 119/157 (75.80%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            AK I +++ +R A++ GID L++AV +TLGP+GRNVVL++ FG+ +++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN + LKRGIDK  + LVE+++   RP+E    I  V  ISAGND  +G
Sbjct:    2 AKRIIYNENARRALEKGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAVVKEGLRNVAAGANAILLKRGIDKATNFLVEQIKSHARPVEDSKSIAQVGAISAGNDFEVG 158          
The following BLAST results are available for this feature:
BLAST of FC931868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LISIN1.084e-4257.4260 kDa chaperonin OS=Listeria innocua GN=groL PE=3... [more]
CH60_GEOSW1.084e-4257.4260 kDa chaperonin OS=Geobacillus sp. (strain WCH70... [more]
CH60_CLOBO1.416e-4256.7760 kDa chaperonin OS=Clostridium botulinum GN=groL... [more]
CH60_HALOH1.849e-4254.7860 kDa chaperonin OS=Halothermothrix orenii (strai... [more]
CH60_GEOTN1.849e-4257.4260 kDa chaperonin OS=Geobacillus thermodenitrifica... [more]
CH60_SYNE72.415e-4255.4160 kDa chaperonin OS=Synechococcus elongatus (stra... [more]
CH60_PELPB2.415e-4255.7060 kDa chaperonin OS=Pelodictyon phaeoclathratifor... [more]
CH60_CLOBB2.415e-4256.1360 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CLOBA2.415e-4256.1360 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH601_SYNP62.415e-4255.4160 kDa chaperonin 1 OS=Synechococcus sp. (strain A... [more]

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Properties
Property NameValue
Genbank descriptionC34202A10EF PostHarveN Citrus clementina cDNA clone C34202A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931868 ID=FC931868; Name=FC931868; organism=Citrus clementina; type=EST; length=700bp
GGCAGCTTCTACTTGTTGTTGGTACCTTATCCGAAACAATTTCCCTCAGC
AGACGCTTCACTCCGTTTGGTTGATTGTTCGAAATGGCTTCTGCTAACGC
CCTTTCTTCGGCTTCCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGA
GGAGAGGAAATCAGAATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCT
GTTAGAGCGTCTGCCAAAGATATTGCTTTTGACCAGATCTCCAGGGCCGC
AATGCAGGCCGGCATCGATAAGCTTTCCGATGCTGTTGGCCTTACTCTGG
GTCCAAGAGGGAGAAATGTTGTTCTGGATGAATTTGGAAGTTCGAAAGTG
GTTAATGATGGAGTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCAT
GGAAAATGCTGGTGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATG
ACTCTGCTGGTGATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATA
ATTAAACTAGGACTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTT
GAAGAGAGGGATTGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGA
AGAGGGTCAGGCCTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACC
ATCTCTGCTGGGAATGATGACCTGATTGGGACATGATCGCCGATGCNATT
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