FC931868

Overview
NameFC931868
Unique NameFC931868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_CLOPE (60 kDa chaperonin OS=Clostridium perfringens GN=groL PE=3 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.565e-41
Identity = 85/155 (54.84%), Postives = 118/155 (76.13%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDL 674
            AK + F + +R +MQAG+DKL++ V +TLGP+GRNV+LD+ FGS  + NDGVTIAR IEL D  EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ ++ GI   V   VEE++K  +P+ G++DI  VA ISA ++ +
Sbjct:    2 AKTLLFGEEARRSMQAGVDKLANTVKVTLGPKGRNVILDKKFGSPLITNDGVTIAREIELEDAYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPILIRNGIKTAVEKAVEEIQKISKPVNGKEDIARVAAISAADEKI 156          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_CLOP1 (60 kDa chaperonin OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=groL PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.565e-41
Identity = 85/155 (54.84%), Postives = 118/155 (76.13%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDL 674
            AK + F + +R +MQAG+DKL++ V +TLGP+GRNV+LD+ FGS  + NDGVTIAR IEL D  EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ ++ GI   V   VEE++K  +P+ G++DI  VA ISA ++ +
Sbjct:    2 AKTLLFGEEARRSMQAGVDKLANTVKVTLGPKGRNVILDKKFGSPLITNDGVTIAREIELEDAYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPILIRNGIKTAVEKAVEEIQKISKPVNGKEDIARVAAISAADEKI 156          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_CHLTE (60 kDa chaperonin OS=Chlorobium tepidum GN=groL PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.565e-41
Identity = 88/158 (55.70%), Postives = 116/158 (73.42%), Query Frame = 3
Query:  210 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            +AKDI FD  +R  ++ G+DKL++AV +TLGP GRNV++D+ FG+     DGVT+A+ IEL DP+EN GA ++REVASKT+D AGDGTTTA+VLA+ I + GL +VT+GA P+ LKRGID+ V  +V EL    R I G+ +I  V TISA ND  IG
Sbjct:    2 TAKDILFDAEARTKLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELVDPVENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVTAGARPIDLKRGIDRAVKEVVAELRNISRSISGKKEIAQVGTISANNDPEIG 159          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_ARCB4 (60 kDa chaperonin OS=Arcobacter butzleri (strain RM4018) GN=groL PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.565e-41
Identity = 85/157 (54.14%), Postives = 117/157 (74.52%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            AK+I F   +R  + +G++KL+DAV +T+GPRGRNV+L + FG+  +  DGV++AR IEL D +EN GA L++EVASKTND AGDGTTTA+VLA  I K GL +VT+GANP+SLKRG+DK    ++ EL+K  + +  + +I+ VATISA +D  IG
Sbjct:    2 AKEILFSDNARNRLYSGVEKLADAVKVTMGPRGRNVLLQKSFGAPTITKDGVSVAREIELKDTLENMGAQLVKEVASKTNDEAGDGTTTATVLAHSIFKEGLRNVTAGANPISLKRGMDKACEAILAELKKSSKVVANKTEIEQVATISANSDSAIG 158          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_AMOA5 (60 kDa chaperonin OS=Amoebophilus asiaticus (strain 5a2) GN=groL PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.565e-41
Identity = 83/157 (52.87%), Postives = 117/157 (74.52%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            AK I FD  +RA +++G+D +++AV +TLGP+GRNVV+D+ +G+  +  DG+++A+ IEL DP+EN GA LI+EVASKT D AGDGTTTA+VLA+ I   G+ +V +GANP+ LKRG+DK +  +VE L++  R I    +I+ VATISA ND  IG
Sbjct:    2 AKHIIFDSEARAKLKSGVDTMANAVKVTLGPKGRNVVIDKKYGAPSITKDGISVAKEIELKDPVENLGAQLIKEVASKTADGAGDGTTTATVLAQSIFSAGIKNVAAGANPMDLKRGVDKAIEAVVERLKQNSRKISNSKEIEQVATISANNDSKIG 158          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_GALSU (60 kDa chaperonin, chloroplastic OS=Galdieria sulphuraria GN=groL PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.044e-41
Identity = 83/156 (53.21%), Postives = 118/156 (75.64%), Query Frame = 3
Query:  216 KDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            K I + + +R A++ GID L++AV +TLGP+GRNVV+++ +G  +++NDGVTIA+ IEL D +EN G ALIR+ ASKTND AGDGTTT++VLA  I+K G+ +V +GANP++LKRGIDK    ++ ++ +  RP+E    I  VATIS+GND+ IG
Sbjct:    3 KQILYQENARKALEKGIDILAEAVSVTLGPKGRNVVIEKKYGPPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTSTVLAHAIVKQGMRNVAAGANPIALKRGIDKATQFIINKISEYSRPVEDNKAITQVATISSGNDENIG 158          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_COPPD (60 kDa chaperonin OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=groL PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.044e-41
Identity = 90/159 (56.60%), Postives = 120/159 (75.47%), Query Frame = 3
Query:  210 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIGT 683
            +AK IAFD+ +R+ +  G+ KLS AV  TLGP+GR VVL+ +FGS  + NDGVTIA+ I+L DP EN GA L +EVASKTND AGDGTTTA+VLA  +++ G+ +VT+GANP++L+RGI+K V  + EE++K  RP+ G+ DI  VATISA  D  IG+
Sbjct:    2 AAKLIAFDEEARSKLLTGVLKLSKAVKATLGPKGRYVVLERKFGSPLITNDGVTIAKEIDLEDPYENLGAQLAKEVASKTNDVAGDGTTTATVLAEAMVREGMKNVTAGANPIALRRGIEKAVEAVTEEIKKLSRPVSGKRDITEVATISA-KDQQIGS 159          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH602_TRIEI (60 kDa chaperonin 2 OS=Trichodesmium erythraeum (strain IMS101) GN=groL2 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.044e-41
Identity = 86/157 (54.78%), Postives = 120/157 (76.43%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            AK I +++ +R A++ G+D L+++V +TLGP+GRNVVL++ FG+ ++VNDGVTIA+ IEL D +EN G +LIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GANP++LKRGIDK    LVE++ +  R IE    I  V  ISAGND+ +G
Sbjct:    2 AKRIIYNENARRALEKGMDILAESVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHVENTGVSLIRQAASKTNDAAGDGTTTATVLAHAMVKEGLRNVAAGANPIALKRGIDKAAGFLVEKIAEHARQIEDSKAIAQVGAISAGNDEEVG 158          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH602_SYNS3 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9311) GN=groL2 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.044e-41
Identity = 85/157 (54.14%), Postives = 121/157 (77.07%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            AK I +++ +R A++ GID L++AV +TLGP+GRNVVL++ FG+ +++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV ++++  +PI   + I  V TISAGND+ +G
Sbjct:    2 AKRIIYNENARRALEKGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKASDFLVGKIQENAKPIADSNAIAQVGTISAGNDEEVG 158          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH602_SYNPW (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.044e-41
Identity = 85/157 (54.14%), Postives = 120/157 (76.43%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            AK I +++ +R A++ GID L+++V +TLGP+GRNVVL++ FG+ +++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV E++ +  PI   + I  V TISAGND+ +G
Sbjct:    2 AKRIIYNENARRALEKGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKASDFLVAEIKDKANPISDSNAIAQVGTISAGNDEEVG 158          
The following BLAST results are available for this feature:
BLAST of FC931868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CLOPE1.565e-4154.8460 kDa chaperonin OS=Clostridium perfringens GN=gr... [more]
CH60_CLOP11.565e-4154.8460 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH60_CHLTE1.565e-4155.7060 kDa chaperonin OS=Chlorobium tepidum GN=groL PE... [more]
CH60_ARCB41.565e-4154.1460 kDa chaperonin OS=Arcobacter butzleri (strain R... [more]
CH60_AMOA51.565e-4152.8760 kDa chaperonin OS=Amoebophilus asiaticus (strai... [more]
CH60_GALSU2.044e-4153.2160 kDa chaperonin, chloroplastic OS=Galdieria sulp... [more]
CH60_COPPD2.044e-4156.6060 kDa chaperonin OS=Coprothermobacter proteolytic... [more]
CH602_TRIEI2.044e-4154.7860 kDa chaperonin 2 OS=Trichodesmium erythraeum (s... [more]
CH602_SYNS32.044e-4154.1460 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH602_SYNPW2.044e-4154.1460 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]

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Properties
Property NameValue
Genbank descriptionC34202A10EF PostHarveN Citrus clementina cDNA clone C34202A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931868 ID=FC931868; Name=FC931868; organism=Citrus clementina; type=EST; length=700bp
GGCAGCTTCTACTTGTTGTTGGTACCTTATCCGAAACAATTTCCCTCAGC
AGACGCTTCACTCCGTTTGGTTGATTGTTCGAAATGGCTTCTGCTAACGC
CCTTTCTTCGGCTTCCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGA
GGAGAGGAAATCAGAATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCT
GTTAGAGCGTCTGCCAAAGATATTGCTTTTGACCAGATCTCCAGGGCCGC
AATGCAGGCCGGCATCGATAAGCTTTCCGATGCTGTTGGCCTTACTCTGG
GTCCAAGAGGGAGAAATGTTGTTCTGGATGAATTTGGAAGTTCGAAAGTG
GTTAATGATGGAGTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCAT
GGAAAATGCTGGTGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATG
ACTCTGCTGGTGATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATA
ATTAAACTAGGACTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTT
GAAGAGAGGGATTGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGA
AGAGGGTCAGGCCTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACC
ATCTCTGCTGGGAATGATGACCTGATTGGGACATGATCGCCGATGCNATT
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