FC931884

Overview
NameFC931884
Unique NameFC931884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.070e-58
Identity = 107/190 (56.32%), Postives = 125/190 (65.79%), Query Frame = 2
Query:  104 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRC 649
            SA  CGS   G  C  G CCS+FGWCG T DYC  G CQS C         P   T   GG+LG IIS  MF+ +L++RND  C  + FY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC+ RE G +  DYC P+  +PC    KY+GRGPIQ+S NYNY  C
Sbjct:   22 SAEQCGSQAGGARCASGLCCSKFGWCGNTNDYCGPGNCQSQC---------PGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQG-SPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC 201          

HSP 2 Score: 36.5798 bits (83), Expect = 1.070e-58
Identity = 13/23 (56.52%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  ATDPV+SFK ++WFW
Sbjct:  209 LLNNPDLVATDPVISFKSALWFW 231          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 2.370e-58
Identity = 106/190 (55.79%), Postives = 124/190 (65.26%), Query Frame = 2
Query:  107 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTA-GDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRC 649
            A NCGS   G  C  G+CCS+FGWCG T DYC  G CQS C         P  G   G GG+LG  IS  MF+ +L++RN+  C  + FY+Y+AFI AA++FP FG SG+   RKREIAAFFAQT HETTGGW  AP G YAWGYCF RE G    DYC P+  +PC    KY+GRGPIQ+S NYNY  C
Sbjct:   26 AQNCGSQGGGKACASGQCCSKFGWCGNTNDYCGSGNCQSQC---------PGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERG-NPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPC 205          

HSP 2 Score: 37.3502 bits (85), Expect = 2.370e-58
Identity = 13/23 (56.52%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  ATDPV+SFK ++WFW
Sbjct:  213 LLNNPDLVATDPVISFKTALWFW 235          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 4.032e-58
Identity = 110/187 (58.82%), Postives = 127/187 (67.91%), Query Frame = 2
Query:  110 GNCGSGVVCPGGECCSRFGWCGLTTDYCC-EGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRC 649
            G    G +CPGG CCS+FGWCG T DYC   GCQS C+           G A   G L  +ISR+ F  +L +RND  CPAR FYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTG  GW  AP G YAWGYC+NRE+   SS YC  DPNYPC  GK Y+GRGP+QLSWNYNY +C
Sbjct:    4 GRQAGGALCPGGLCCSQFGWCGSTADYCTVPGCQSQCS---------GSGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSS-YCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQC 179          

HSP 2 Score: 31.5722 bits (70), Expect = 4.032e-58
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  ++DP +SFK + WFW
Sbjct:  187 LLNNPDLLSSDPTISFKSAFWFW 209          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 3.363e-57
Identity = 103/190 (54.21%), Postives = 126/190 (66.32%), Query Frame = 2
Query:  107 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELG-----KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNY 640
            A  CGS   G +CP   CCS +GWCG T+DYC +GCQS C+   CG      G  G GG  G      ++S+++FE LL +RND  CPAR FYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW  AP G Y+WGYCF  E+GA +S YC P+  +PC    KY+GRGPIQLS+NYNY
Sbjct:   23 AEQCGSQAGGALCPNCLCCSSYGWCGSTSDYCGDGCQSQCDG--CGGGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATAS-YCVPSAEWPCAPDKKYFGRGPIQLSYNYNY 209          

HSP 2 Score: 33.8834 bits (76), Expect = 3.363e-57
Identity = 11/23 (47.83%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +P+  A+DPV+SFK ++WFW
Sbjct:  220 LLNNPELVASDPVVSFKTALWFW 242          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.386e-57
Identity = 107/189 (56.61%), Postives = 127/189 (67.20%), Query Frame = 2
Query:  107 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCG----ECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNY 640
            A  CGS   G  CP   CCSRFGWCG T+DYC +GCQS C    CG       P    +G GG +  I+SR +F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   RKRE+AAF AQT HETTGGW  AP G +AWGYCF +E G A+S+YC P+  +PC  GK YYGRGPIQLS NYNY
Sbjct:   19 AEQCGSQAGGATCPNCLCCSRFGWCGSTSDYCGDGCQSQC--AGCGGGGTPVTPTPTPSGGGG-VSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY 203          

HSP 2 Score: 35.039 bits (79), Expect = 4.386e-57
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  ATDP +SFK ++WFW
Sbjct:  214 LLRNPDLVATDPTVSFKTAMWFW 236          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 5.721e-57
Identity = 104/191 (54.45%), Postives = 124/191 (64.92%), Query Frame = 2
Query:  104 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRC 649
            SA  CG    G  C  G CCS FGWCG T DYC  G CQS C      +  P  G    GG++G +IS  MF+ +L++RND  C  +  FY+Y+AFI AA++F  FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC    KY+GRGPIQ+S NYNY  C
Sbjct:   17 SAEQCGKQAGGARCAAGLCCSNFGWCGNTNDYCGPGKCQSQCPSGPSPK-PPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQG-SPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC 205          

HSP 2 Score: 37.3502 bits (85), Expect = 5.721e-57
Identity = 14/23 (60.87%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  ATDPV+SFK +IWFW
Sbjct:  213 LLNNPDLVATDPVISFKSAIWFW 235          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 9.713e-57
Identity = 104/186 (55.91%), Postives = 126/186 (67.74%), Query Frame = 2
Query:  107 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECD-PDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNY 640
            A  CG+   G  CP   CCSR+GWCG T+D+C +GCQS C+   CG    P   +  DG  +G I+ R +FE LL +RND  CPAR FYTY+AF+ AA AFPAFG +GN   RKRE+AAF  QT HETTGGWP AP G ++WGYCF +E     SDYC P+  +PC    KYYGRGPIQLS+N+NY
Sbjct:   32 AEQCGAQAGGARCPNCLCCSRWGWCGTTSDFCGDGCQSQCSG--CGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQN-PPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNY 212          

HSP 2 Score: 32.3426 bits (72), Expect = 9.713e-57
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  ATD  +SFK ++WFW
Sbjct:  223 LLSNPDLVATDATVSFKTALWFW 245          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.652e-56
Identity = 106/191 (55.50%), Postives = 124/191 (64.92%), Query Frame = 2
Query:  104 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRC 649
            SA  CGS   G +C  G CCS+FGWCG T DYC  G CQS C            G  G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC    KY+GRGPIQ+S NYNY  C
Sbjct:   17 SAEQCGSQAGGALCASGLCCSKFGWCGDTNDYCGPGNCQSQC-----------PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC 195          

HSP 2 Score: 34.2686 bits (77), Expect = 1.652e-56
Identity = 13/23 (56.52%), Postives = 18/23 (78.26%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  ATD V+SFK +IWFW
Sbjct:  203 LLNNPDLVATDSVISFKSAIWFW 225          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 2.153e-56
Identity = 99/183 (54.10%), Postives = 121/183 (66.12%), Query Frame = 2
Query:  116 CGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYC--DPNYPCRG--KYYGRGPIQLSWNYNY 640
            CGS   G +CP   CCS++GWCG T+ YC  GCQS C+   CG   P   + G G  +  I+SR +F+ +L +RND  CPA+ FYTYDAF+ AA AFP+F  +G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYCF  E  G   SDYC     +PC    KYYGRGPIQ+S+NYNY
Sbjct:   23 CGSQAGGALCPNCLCCSQYGWCGSTSAYCGSGCQSQCSGS-CGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNY 204          

HSP 2 Score: 30.0314 bits (66), Expect = 2.153e-56
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  A+D  +SFK + WFW
Sbjct:  215 LLSNPDLVASDATVSFKTAFWFW 237          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 3.660e-56
Identity = 103/187 (55.08%), Postives = 121/187 (64.71%), Query Frame = 2
Query:  107 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNY 640
            A  CGS   G VCP   CCS+FGWCG T+DYC  GCQS C+   CG   P   +   G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYCF  E  GAA  DYC  +  +PC    KYYGRGPIQLS+N+NY
Sbjct:   21 AEQCGSQAGGAVCPNCLCCSQFGWCGSTSDYCGAGCQSQCSAAGCGGGGPTPPSGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY 207          

HSP 2 Score: 26.5646 bits (57), Expect = 3.660e-56
Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = 1
Query:  688 PDPSATDPVLSFKVSIWFW 744
            PD  A+D  +SF  + WFW
Sbjct:  222 PDLVASDATVSFDTAFWFW 240          
The following BLAST results are available for this feature:
BLAST of FC931884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI2_TOBAC1.070e-5856.32Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHIT_SOLTU2.370e-5855.79Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI2_GOSHI4.032e-5858.82Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI9_ORYSJ3.363e-5754.21Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SECCE4.386e-5756.61Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI4_SOLTU5.721e-5754.45Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_ORYSJ9.713e-5755.91Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_SOLTU1.652e-5655.50Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_ORYSJ2.153e-5654.10Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI12_ORYSJ3.660e-5655.08Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionC34202C02EF PostHarveN Citrus clementina cDNA clone C34202C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931884 ID=FC931884; Name=FC931884; organism=Citrus clementina; type=EST; length=744bp
GACACAAGCAGAGGATAATTCATATCATAACTGTTGCTTTCAAATGAGGC
TTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGGA
GGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGTG
TTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGAAG
GCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGAC
GACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGAA
GATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCCA
GATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCA
GCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGC
CTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCAC
CTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCGCT
GCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTA
TGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATTACTTACGGTGCG
GAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACATCCAGACCCTTCTG
CTACTGATCCAGTACTATCATTCAAAGTCAGCATCTGGTTCTGG
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