FC931884

Overview
NameFC931884
Unique NameFC931884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 3.660e-56
Identity = 103/191 (53.93%), Postives = 123/191 (64.40%), Query Frame = 2
Query:  104 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRC 649
            SA  CGS   G +C  G CCS+FGWCG T +YC  G CQS C            G  G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AF+ AA +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC    KY+GRGPIQ+S NYNY  C
Sbjct:   21 SAEQCGSQAGGALCASGLCCSKFGWCGNTNEYCGPGNCQSQC-----------PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC 199          

HSP 2 Score: 37.3502 bits (85), Expect = 3.660e-56
Identity = 14/23 (60.87%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  ATDPV+SFK +IWFW
Sbjct:  207 LLNNPDLVATDPVISFKSAIWFW 229          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 8.111e-56
Identity = 105/191 (54.97%), Postives = 123/191 (64.40%), Query Frame = 2
Query:  104 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRC 649
            SA  CGS   G +C  G CCS+FGWCG T DYC  G CQS C            G  G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC    KY+GRGPIQ+S NYNY  C
Sbjct:   17 SAEQCGSQAGGALCAPGLCCSKFGWCGNTNDYCGPGNCQSQC-----------PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC 195          

HSP 2 Score: 34.2686 bits (77), Expect = 8.111e-56
Identity = 13/23 (56.52%), Postives = 18/23 (78.26%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  ATD V+SFK +IWFW
Sbjct:  203 LLNNPDLVATDSVISFKSAIWFW 225          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 202.216 bits (513), Expect = 2.343e-55
Identity = 104/185 (56.22%), Postives = 123/185 (66.49%), Query Frame = 2
Query:  107 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNY 640
            A  CGS   G  CP   CCSRFGWCG +T YC +GCQS C+    G   P   T   GG +  I+SR +F+ +L +RND  C A+ FYTYDAF+ AA AF  FG +G    RKRE+AAF AQT HETTGGW  AP G +AWGYCF +E G A+S+YC P+  +PC  GK YYGRGPIQLS NYNY
Sbjct:   19 AEQCGSQAGGATCPNCLCCSRFGWCG-STPYCGDGCQSQCSGCGGGST-PVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY 200          

HSP 2 Score: 35.039 bits (79), Expect = 2.343e-55
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  ATDP +SFK ++WFW
Sbjct:  211 LLRNPDLVATDPTVSFKTAMWFW 233          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 5.192e-55
Identity = 104/191 (54.45%), Postives = 122/191 (63.87%), Query Frame = 2
Query:  104 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRC 649
            SA  CGS   G +C  G CCS+FGWCG T DYC  G CQS C               G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGW  AP G YAWGYCF RE G +  DYC P+  +PC    KY+GRGPIQ+S NYNY  C
Sbjct:   17 SAEQCGSQAGGALCASGLCCSKFGWCGNTNDYCGPGNCQSQC-------------PGGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQG-SPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPC 193          

HSP 2 Score: 33.8834 bits (76), Expect = 5.192e-55
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  ATD ++SFK +IWFW
Sbjct:  201 LLNNPDLVATDSIISFKSAIWFW 223          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.954e-54
Identity = 103/191 (53.93%), Postives = 120/191 (62.83%), Query Frame = 2
Query:  104 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDG-GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR--GKYYGRGPIQLSWNYNYLRC 649
            SA  CG    G  CP G CCS FGWCG T DYC  G CQS C         P   T G   G++  IIS  MF+ +L++RND  C  + FYTY+AFI AA++F  FG +G+ T RKRE+AAFFAQT HETTGGW  AP G YAWGYC+ RE G   S YC     +PC    KYYGRGPIQ+S+NYNY  C
Sbjct:   22 SAEQCGKQAGGARCPSGMCCSNFGWCGNTQDYCGPGKCQSQCPSGPGPTPRPPTPTPGPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPS-YCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPC 211          

HSP 2 Score: 31.9574 bits (71), Expect = 1.954e-54
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  AT+ V+SFK +IWFW
Sbjct:  219 LLNNPDLVATNAVVSFKSAIWFW 241          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.954e-54
Identity = 97/184 (52.72%), Postives = 120/184 (65.22%), Query Frame = 2
Query:  107 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP-NYPCR--GKYYGRGPIQLSWNYNY 640
            A  CGS   G VCP G CCS+FG+CG T  YC +GCQS C         P   T G  G++G+++   +F+ +L+YRND RC    FYTYDAFI AA++F  FG +G++  +K+E+AAF AQT HETTGGWP AP G YAWGYCF  E       YC P ++PC    KYYGRGPIQL+ NYNY
Sbjct:   23 AEQCGSQAGGAVCPNGLCCSKFGFCGSTDPYCGDGCQSQCKSSPTPTI-PTPSTGG--GDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQN-TQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNY 202          

HSP 2 Score: 33.8834 bits (76), Expect = 1.954e-54
Identity = 11/23 (47.83%), Postives = 18/23 (78.26%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  +T+P +SFK +IWFW
Sbjct:  213 LINNPDLLSTNPTVSFKTAIWFW 235          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 2.548e-54
Identity = 95/184 (51.63%), Postives = 121/184 (65.76%), Query Frame = 2
Query:  116 CGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECD--PDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD--PNYPCRG--KYYGRGPIQLSWNYNY 640
            CGS   G +CP   CCS++GWCG T+DYC  GCQS C+    G C   P   ++G G  +  IIS  +F+ +L +RND+ C A+ FYTYDAF+ AA A+P F  +G+    KRE+AAF AQT HETTGGWP AP G Y+WGYCF  E    +  YC+  P +PC    KYYGRGPIQ+++NYNY
Sbjct:   21 CGSQAGGALCPNCLCCSQYGWCGSTSDYCGAGCQSQCS----GGCGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY 200          

HSP 2 Score: 30.0314 bits (66), Expect = 2.548e-54
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  A+D  +SFK + WFW
Sbjct:  211 LLNNPDLVASDATVSFKTAFWFW 233          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.313e-46
Identity = 87/162 (53.70%), Postives = 100/162 (61.73%), Query Frame = 2
Query:  101 GSAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGE----LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYC-FNREVGAASSD 562
            GSA  CG      +CPGG CCS +GWCG T DYC +GCQS C+    G      G  G GG     L  II   MF+D+L+YRND +CPA  FYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HET G WP A G +Y WGYC  N   G    D
Sbjct:   19 GSAEQCGQQAGDALCPGGLCCSSYGWCGTTADYCGDGCQSQCDGGGGGGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHMNYNYGLCGDD 180          

HSP 2 Score: 31.187 bits (69), Expect = 1.313e-46
Identity = 9/23 (39.13%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            +++ P+   TDP ++FK ++WFW
Sbjct:  185 LLQEPELVETDPFIAFKTALWFW 207          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 4.951e-46
Identity = 81/126 (64.29%), Postives = 97/126 (76.98%), Query Frame = 2
Query:  284 KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRC 649
            KIISR MF+ +L++RN+  CPA+ FYTYDAF+ AAK+FP+FG +G+  +RKRE+AAF  QT HETTGGWP AP G YAWGYCF +E    SS+YC   P YPC  GK YYGRGP+QLSWNYNY  C
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERN-PSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPC 128          

HSP 2 Score: 33.8834 bits (76), Expect = 4.951e-46
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  685 HPDPSATDPVLSFKVSIWFW 744
            +PD  ATD VLSFK ++WFW
Sbjct:  139 NPDLVATDRVLSFKTALWFW 158          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.009e-44
Identity = 92/188 (48.94%), Postives = 116/188 (61.70%), Query Frame = 2
Query:  110 GNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDG-----TAGDGGELG--KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNY 640
            G    G  CP   CCSR+GWCGLT DYC  GCQS C   V  +   DD      TA  GG  G   +++   FE +L +R+D  CPAR FY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT H T+       GG Y+WGYC+ +EV  A+SD+C PN  +PC  GK Y+ RGP+Q+++NYNY
Sbjct:   36 GRQAGGARCPNRLCCSRWGWCGLTDDYCKGGCQSQCR--VSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY 213          

HSP 2 Score: 29.6462 bits (65), Expect = 2.009e-44
Identity = 9/20 (45.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  685 HPDPSATDPVLSFKVSIWFW 744
            +P+  ATDP ++FK ++W W
Sbjct:  227 NPELVATDPTVAFKTALWLW 246          
The following BLAST results are available for this feature:
BLAST of FC931884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIC_SOLLC3.660e-5653.93Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI3_SOLTU8.111e-5654.97Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_HORVU2.343e-5556.2226 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI2_SOLTU5.192e-5554.45Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_TOBAC1.954e-5453.93Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIX_PEA1.954e-5452.72Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI3_ORYSJ2.548e-5451.63Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_POPTR1.313e-4653.70Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIT_CARPA4.951e-4664.29Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI7_ORYSJ2.009e-4448.94Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC34202C02EF PostHarveN Citrus clementina cDNA clone C34202C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931884 ID=FC931884; Name=FC931884; organism=Citrus clementina; type=EST; length=744bp
GACACAAGCAGAGGATAATTCATATCATAACTGTTGCTTTCAAATGAGGC
TTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGGA
GGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGTG
TTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGAAG
GCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGAC
GACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGAA
GATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCCA
GATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCA
GCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGC
CTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCAC
CTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCGCT
GCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTA
TGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATTACTTACGGTGCG
GAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACATCCAGACCCTTCTG
CTACTGATCCAGTACTATCATTCAAAGTCAGCATCTGGTTCTGG
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