FC931884

Overview
NameFC931884
Unique NameFC931884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.009e-44
Identity = 92/188 (48.94%), Postives = 116/188 (61.70%), Query Frame = 2
Query:  110 GNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDG-----TAGDGGELG--KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNY 640
            G    G  CP   CCSR+GWCGLT DYC  GCQS C   V  +   DD      TA  GG  G   +++   FE +L +R+D  CPAR FY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT H T+       GG Y+WGYC+ +EV  A+SD+C PN  +PC  GK Y+ RGP+Q+++NYNY
Sbjct:   36 GRQAGGARCPNRLCCSRWGWCGLTDDYCKGGCQSQCR--VSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY 213          

HSP 2 Score: 29.6462 bits (65), Expect = 2.009e-44
Identity = 9/20 (45.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  685 HPDPSATDPVLSFKVSIWFW 744
            +P+  ATDP ++FK ++W W
Sbjct:  227 NPELVATDPTVAFKTALWLW 246          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.011e-44
Identity = 81/185 (43.78%), Postives = 99/185 (53.51%), Query Frame = 2
Query:  116 CGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP----NYPCRGKYYGRGPIQLSWNYNYLRC 649
            CGS      CP   CCS  G+CGLT  YCC GC S C                         +  MFE +L  RN+  CP + FYTYDA+  A + +P FG +G++  RKRE+AAFFAQT  ET+G         + WGYC   E+   +SDYCDP    +YPC   YYGRGP+QL WNYNY  C
Sbjct:   26 CGSQAGNATCPNDLCCSSGGYCGLTVAYCCAGCVSQCRNC--------------------FFTESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELN-PNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGEC 189          

HSP 2 Score: 36.1946 bits (82), Expect = 2.011e-44
Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            +++ P+  ATDPVLSF+ ++WFW
Sbjct:  197 LLDEPEKVATDPVLSFEAALWFW 219          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.822e-42
Identity = 75/127 (59.06%), Postives = 91/127 (71.65%), Query Frame = 2
Query:  272 GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNY 640
            G +  IIS   F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   RKR++AAF AQT HETTGGW  AP G +AWGYCF +E GAA +DYC P+  +PC    +YYGRGPIQLS NYNY
Sbjct:   23 GSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAA-ADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY 148          

HSP 2 Score: 35.4242 bits (80), Expect = 6.822e-42
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  ATDP +SFK ++WFW
Sbjct:  159 LLRNPDLVATDPTVSFKTALWFW 181          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.967e-41
Identity = 76/127 (59.84%), Postives = 92/127 (72.44%), Query Frame = 2
Query:  272 GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYNY 640
            G +  I+SR  F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   +KRE+AAF AQT HETTGGW  AP G +AWGYCF +E G ASSDYC P+  +PC    +YYGRGPIQLS NYNY
Sbjct:   23 GSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY 148          

HSP 2 Score: 31.187 bits (69), Expect = 1.967e-41
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  ATD  + FK +IWFW
Sbjct:  159 LLANPDLVATDATVGFKTAIWFW 181          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.307e-39
Identity = 70/125 (56.00%), Postives = 89/125 (71.20%), Query Frame = 2
Query:  278 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR--GKYYGRGPIQLSWNYNY 640
            +  +IS+ +FE +L +RND+ C A+ FYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYC+NRE G +  DYC     +PC    KY+GRGPIQ+S+NYNY
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQG-SPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNY 128          

HSP 2 Score: 31.9574 bits (71), Expect = 2.307e-39
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            ++ +PD  A D V+SFK ++WFW
Sbjct:  139 LLNNPDLVANDAVVSFKTALWFW 161          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.853e-35
Identity = 67/129 (51.94%), Postives = 81/129 (62.79%), Query Frame = 2
Query:  254 GTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNY 640
            G +G    +G II+R MFE +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC   E+            P    YYGRGPIQL+  YNY
Sbjct:   19 GASGQQAGVGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEI-----------TPSDPPYYGRGPIQLTHKYNY 135          

HSP 2 Score: 33.8834 bits (76), Expect = 1.853e-35
Identity = 11/23 (47.83%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            +V +PD  ++DPV++F+ +IWFW
Sbjct:  146 LVNNPDLVSSDPVVAFRTAIWFW 168          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.053e-32
Identity = 60/122 (49.18%), Postives = 79/122 (64.75%), Query Frame = 2
Query:  281 GKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNYLR 646
            G I++R++FE +L +RN+  CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYCF R++  +             +YYGRGPIQL+   NY R
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD------------RYYGRGPIQLTHQSNYER 133          

HSP 2 Score: 37.7354 bits (86), Expect = 1.053e-32
Identity = 13/23 (56.52%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            +V +PD  ATDP++SF+ +IWFW
Sbjct:  144 LVNNPDLVATDPIISFRTAIWFW 166          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.053e-32
Identity = 59/122 (48.36%), Postives = 79/122 (64.75%), Query Frame = 2
Query:  281 GKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNYLR 646
            G I++R++FE +L +RN+  CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYCF +++  +             +YYGRGPIQL+   NY R
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD------------RYYGRGPIQLTHQSNYER 133          

HSP 2 Score: 38.891 bits (89), Expect = 1.053e-32
Identity = 14/23 (60.87%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            +V +PD  ATDP++SFK +IWFW
Sbjct:  144 LVNNPDLVATDPIISFKTAIWFW 166          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.719e-32
Identity = 63/122 (51.64%), Postives = 80/122 (65.57%), Query Frame = 2
Query:  275 ELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYNY 640
            ++G I++  +F ++L+ RND RCPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   A  G +A GYCF RE     S            +YGRGPIQL+   NY
Sbjct:   18 DVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQMGSG-----------FYGRGPIQLTGQSNY 127          

HSP 2 Score: 34.2686 bits (77), Expect = 8.719e-32
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  676 VVEHPDPSATDPVLSFKVSIWFW 744
            +V +PD  ATD  +SFK +IWFW
Sbjct:  138 LVNNPDLVATDATVSFKTAIWFW 160          
BLAST of FC931884 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.580e-32
Identity = 68/141 (48.23%), Postives = 86/141 (60.99%), Query Frame = 2
Query:  254 GTAGDGG------ELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD------PNYPCRGKYYGRGPIQLSWNYNY 640
            G  G GG       +  I+S +++  L  +++D  CPAR FYTY +F+ AA  FP F  +G    RKRE+AAF AQ  HETTGGW  AP G YAWG C+  E+   SS YCD      P YP +  Y+GRGPIQ+SWN+NY
Sbjct:   35 GGGGGGGYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSS-YCDATDKQWPCYPGK-SYHGRGPIQISWNFNY 173          
The following BLAST results are available for this feature:
BLAST of FC931884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI7_ORYSI2.009e-4448.94Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI8_POPTR2.011e-4443.78Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIC_SECCE6.822e-4259.06Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_HORVU1.967e-4159.8426 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHID_SOLLC2.307e-3956.00Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI11_ORYSJ1.853e-3551.94Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI1.053e-3249.18Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SOLLC1.053e-3248.36Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIB_SOLLC8.719e-3251.64Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI10_ORYSJ9.580e-3248.23Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionC34202C02EF PostHarveN Citrus clementina cDNA clone C34202C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931884 ID=FC931884; Name=FC931884; organism=Citrus clementina; type=EST; length=744bp
GACACAAGCAGAGGATAATTCATATCATAACTGTTGCTTTCAAATGAGGC
TTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGGA
GGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGTG
TTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGAAG
GCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGAC
GACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGAA
GATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCCA
GATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCA
GCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGC
CTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCAC
CTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCGCT
GCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTA
TGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATTACTTACGGTGCG
GAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACATCCAGACCCTTCTG
CTACTGATCCAGTACTATCATTCAAAGTCAGCATCTGGTTCTGG
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